TCONS_00051756 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051756
Unique NameTCONS_00051756
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length548

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051756 ID=TCONS_00051756|Name=TCONS_00051756|organism=Clytia hemisphaerica|type=transcript|length=548bp
ATTACACCATAAATGAATTAAGCCCTTCAATACGatATCAAAGAAAATAC
AGATTATTTGCGGGGCTGTGGTTTGATCTGAAGAAGCCACACTTCAAAAC
CTTTTTGATGCCCTTTGTTACAGAGCTGCAAGAGTTTGCTCAAGggAAAC
CGCTGAAAACTACTGCTGGTCCAAAAACTGTCAAGGTCCATCTTCTTTCT
GGAGTTTTTGATGCCCCTGCAAAGTGCCAGTTTCAAAACATTGTTCAATT
CAATGGGGAATATGGCTGTCCATACTGCCTTGAACCTGGAATAACAGTGA
AAGCTGGGAAAGGTCATACCCATTGTTACCCTTTCAATTTTGATAGTAAA
ACAGGTCATGCAGCACTGCGAACACATAATCAAACACTGAAACATGCCAA
AGAAGCACAAAAGAAGATGATGGAGAGTGGAAAGGAGGTGAAGATATGTG
GGGTTAAAGGCTTATCGTGGTCCATGAGAATTCCTTGTTTCGATGTTGTC
AATGGATTGGCTCTGGACTACTTACACAATACATTACTGGGTGTTGTC
Run BLAST on NCBI

protein sequence of TCONS_00051756-protein

>TCONS_00051756-protein ID=TCONS_00051756-protein|Name=TCONS_00051756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
YTINELSPSIRYQRKYRLFAGLWFDLKKPHFKTFLMPFVTELQEFAQGKP
LKTTAGPKTVKVHLLSGVFDAPAKCQFQNIVQFNGEYGCPYCLEPGITVK
AGKGHTHCYPFNFDSKTGHAALRTHNQTLKHAKEAQKKMMESGKEVKICG
VKGLSWSMRIPCFDVVNGLALDYLHNTLLGVV
Run BLAST on NCBI

transcript from alignment at scaffold_204:53486..55341-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051756 ID=TCONS_00051756|Name=TCONS_00051756|organism=Clytia hemisphaerica|type=transcript|length=1856bp|location=Sequence derived from alignment at scaffold_204:53486..55341- (Clytia hemisphaerica)
ATTACACCATAAATGAATTAAGCCCTTCAATACGGTAAGAACAGTAGTTT
GTTAATATTACGTTAATAAGTTTACATCATTCTTTTTTGTACTTAGTAAA
TTTAGTGGATTCTAATATATTTTTTATAGATATCAAAGAAAATACAGATT
ATTTGCGGGGCTGTGGTTTGATCTGAAGAAGCCACACTTCAAAACCTTTT
TGATGCCCTTTGTTACAGAGCTGCAAGAGTTTGCTCAAGGTATTCTTATT
GATCACTTCATGATACCTTATTGATCACTTTATGATACTTTGTTAATTTT
GTGCTGGAGTTTTGGTTGCCTTTTGATATTCTATATTTAGTAGCAATACT
TAATCATATATATAACACCTAAAAGTCACTTTCTGATTTTTTCACCTTGA
TTTCTCCCATATTTAGTTTTGAAATTACATGTTCTTCGATGTAGTCGATA
TCTTTCTTATCCGCTATCTCTTTCGTGTCTTCTGTAGTTTCATACAGGTA
TCATGAGATTACACGAAGTCGCTTCAATCCATTTTTTATCCGTTTTTTCT
TTTTCAATGAAACGCTTAATCGTTTTTGTTTGCGACTCGAGATGCTTCTT
GGTTATTTCTGAATAACTTGATTTCTCACAAGCTATTTCATTCACAGACG
AAGATTTCTTGTTTGCCATTTTATTTATTTTGCTTTCCAGCACGTCAATT
CTTTTATTGAAGGTGTTCTCAATTTTTGCGACTGCTTTATTCACATTGTT
AGTTGACACATCAGCTTTCAAATTTGAAATTTCCTCACGTTGTGCTTTTA
TTATATTCTCACATGCATTGATCTCCTTTTATAAATCTCCAACAGACTTG
AAATTCAATTTCTTCTTCAATTCTGGTGTTATGATGACACAGCTCATGCA
TTGATAGCTTCTAGATTTGTGTTGAAGATAGAGCTGGATTTGATAAGGAG
GAAGCTCAGAGCAAGCTAAATGAACTCGACGTTCGCATTTCTTGCATTGT
AACGTGTCTTTTTTATTTGTACTTGCATGAATGAGGCAGCTTGATGGGGT
ACAAGAACCAATTTCCTCGGATTTTCCTTCAAATTTTCGAGTTATTTCTG
CCATTTTGTGCACATTTTTTGCTGCTCTCACGATGCGACTGTATTTGAAT
AAGAACTTTCTATTAGAATAGGCTAAAATGTGCTGAGGTGACCTTGATGT
TTCAACAAAAAAAGAATACATTTAGACATGCCTTAAGACCCAATAAAAAC
TTTTTTCTTTCAGGGAAACCGCTGAAAACTACTGCTGGTCCAAAAACTGT
CAAGGTCCATCTTCTTTCTGGAGTTTTTGATGCCCCTGCAAAGTGCCAGT
TTCAAAACATTGTTCAATTCAATGGGGAATATGGCTGTCCATACTGCCTT
GAACCTGGAATAACAGTGAAAGCTGGGAAAGGTCATACCCATTGTTACCC
TTTCAATTTTGATAGTAAAACAGGTCATGCAGCACTGCGAACACATAATC
AAACACTGAAACATGCCAAAGAAGCACAAAAGAAGGTAAATTTGGTGTTT
AAATCAAGATGAATAACTTCTACAATGAGATTAAATTTGACAGATTTCAA
AGATATAGGGTTTGAGATTTGAAAAATGCTCATGAAGGTTTTTATCTTTT
TCAGAAGAGACAAAAATTTGAAAATTCATTTGGGCAGAATAAACTTTCAA
CTCCTTTCAACCTTTTTAAATTAGATGATGGAGAGTGGAAAGGAGGTGAA
GATATGTGGGGTTAAAGGCTTATCGTGGTCCATGAGAATTCCTTGTTTCG
ATGTTGTCAATGGATTGGCTCTGGACTACTTACACAATACATTACTGGGT
GTTGTC

Coding sequence (CDS) from alignment at scaffold_204:53486..55341-

>TCONS_00051756 ID=TCONS_00051756|Name=TCONS_00051756|organism=Clytia hemisphaerica|type=CDS|length=2184bp|location=Sequence derived from alignment at scaffold_204:53486..55341- (Clytia hemisphaerica)
ATGATGGAGAGTGGAAAGGAGGTGAAGATATGTGGGGTTAAAGGCTTATC
GTGGTCCATGAGAATTCCTTGTTTCGATGTTGTCAATGGATTGGCTCTGG
ACTACTTACACAATACATTACTGGGTGTTGTCGGAAACCGCTGAAAACTA
CTGCTGGTCCAAAAACTGTCAAGGTCCATCTTCTTTCTGGAGTTTTTGAT
GCCCCTGCAAAGTGCCAGTTTCAAAACATTGTTCAATTCAATGGGGAATA
TGGCTGTCCATACTGCCTTGAACCTGGAATAACAGTGAAAGCTGGGAAAG
GTCATACCCATTGTTACCCTTTCAATTTTGATAGTAAAACAGGTCATGCA
GCACTGCGAACACATAATCAAACACTGAAACATGCCAAAGAAGCACAAAA
GAAGATATCAAAGAAAATACAGATTATTTGCGGGGCTGTGGTTTGATCTG
AAGAAGCCACACTTCAAAACCTTTTTGATGCCCTTTGTTACAGAGCTGCA
AGAGTTTGCTCAAGTACACCATAAATGAATTAAGCCCTTCAATACGATGA
TGGAGAGTGGAAAGGAGGTGAAGATATGTGGGGTTAAAGGCTTATCGTGG
TCCATGAGAATTCCTTGTTTCGATGTTGTCAATGGATTGGCTCTGGACTA
CTTACACAATACATTACTGGGTGTTGTCGGAAACCGCTGAAAACTACTGC
TGGTCCAAAAACTGTCAAGGTCCATCTTCTTTCTGGAGTTTTTGATGCCC
CTGCAAAGTGCCAGTTTCAAAACATTGTTCAATTCAATGGGGAATATGGC
TGTCCATACTGCCTTGAACCTGGAATAACAGTGAAAGCTGGGAAAGGTCA
TACCCATTGTTACCCTTTCAATTTTGATAGTAAAACAGGTCATGCAGCAC
TGCGAACACATAATCAAACACTGAAACATGCCAAAGAAGCACAAAAGAAG
ATATCAAAGAAAATACAGATTATTTGCGGGGCTGTGGTTTGATCTGAAGA
AGCCACACTTCAAAACCTTTTTGATGCCCTTTGTTACAGAGCTGCAAGAG
TTTGCTCAAGTACACCATAAATGAATTAAGCCCTTCAATACGATGATGGA
GAGTGGAAAGGAGGTGAAGATATGTGGGGTTAAAGGCTTATCGTGGTCCA
TGAGAATTCCTTGTTTCGATGTTGTCAATGGATTGGCTCTGGACTACTTA
CACAATACATTACTGGGTGTTGTCGGAAACCGCTGAAAACTACTGCTGGT
CCAAAAACTGTCAAGGTCCATCTTCTTTCTGGAGTTTTTGATGCCCCTGC
AAAGTGCCAGTTTCAAAACATTGTTCAATTCAATGGGGAATATGGCTGTC
CATACTGCCTTGAACCTGGAATAACAGTGAAAGCTGGGAAAGGTCATACC
CATTGTTACCCTTTCAATTTTGATAGTAAAACAGGTCATGCAGCACTGCG
AACACATAATCAAACACTGAAACATGCCAAAGAAGCACAAAAGAAGATAT
CAAAGAAAATACAGATTATTTGCGGGGCTGTGGTTTGATCTGAAGAAGCC
ACACTTCAAAACCTTTTTGATGCCCTTTGTTACAGAGCTGCAAGAGTTTG
CTCAAGTACACCATAAATGAATTAAGCCCTTCAATACGATGATGGAGAGT
GGAAAGGAGGTGAAGATATGTGGGGTTAAAGGCTTATCGTGGTCCATGAG
AATTCCTTGTTTCGATGTTGTCAATGGATTGGCTCTGGACTACTTACACA
ATACATTACTGGGTGTTGTCGGAAACCGCTGAAAACTACTGCTGGTCCAA
AAACTGTCAAGGTCCATCTTCTTTCTGGAGTTTTTGATGCCCCTGCAAAG
TGCCAGTTTCAAAACATTGTTCAATTCAATGGGGAATATGGCTGTCCATA
CTGCCTTGAACCTGGAATAACAGTGAAAGCTGGGAAAGGTCATACCCATT
GTTACCCTTTCAATTTTGATAGTAAAACAGGTCATGCAGCACTGCGAACA
CATAATCAAACACTGAAACATGCCAAAGAAGCACAAAAGAAGATATCAAA
GAAAATACAGATTATTTGCGGGGCTGTGGTTTGATCTGAAGAAGCCACAC
TTCAAAACCTTTTTGATGCCCTTTGTTACAGAGCTGCAAGAGTTTGCTCA
AGTACACCATAAATGAATTAAGCCCTTCAATACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032765XLOC_032765Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051756-exon-scaffold_204-1575043694:55308..55341TCONS_00051756-exon-scaffold_204-1575043694:55308..55341Clytia hemisphaericaexon
TCONS_00051756-exon-scaffold_204-1575043694:55103..55212TCONS_00051756-exon-scaffold_204-1575043694:55103..55212Clytia hemisphaericaexon
TCONS_00051756-exon-scaffold_204-1575043694:53807..54078TCONS_00051756-exon-scaffold_204-1575043694:53807..54078Clytia hemisphaericaexon
TCONS_00051756-exon-scaffold_204-1575043694:53486..53617TCONS_00051756-exon-scaffold_204-1575043694:53486..53617Clytia hemisphaericaexon
TCONS_00051756-exon-scaffold_204-1510915933:55308..55341TCONS_00051756-exon-scaffold_204-1510915933:55308..55341Clytia hemisphaericaexon
TCONS_00051756-exon-scaffold_204-1510915933:55103..55212TCONS_00051756-exon-scaffold_204-1510915933:55103..55212Clytia hemisphaericaexon
TCONS_00051756-exon-scaffold_204-1510915933:53807..54078TCONS_00051756-exon-scaffold_204-1510915933:53807..54078Clytia hemisphaericaexon
TCONS_00051756-exon-scaffold_204-1510915933:53486..53617TCONS_00051756-exon-scaffold_204-1510915933:53486..53617Clytia hemisphaericaexon
TCONS_00051756-exon-scaffold_204-1491911889:55308..55341TCONS_00051756-exon-scaffold_204-1491911889:55308..55341Clytia hemisphaericaexon
TCONS_00051756-exon-scaffold_204-1491911889:55103..55212TCONS_00051756-exon-scaffold_204-1491911889:55103..55212Clytia hemisphaericaexon
TCONS_00051756-exon-scaffold_204-1491911889:53807..54078TCONS_00051756-exon-scaffold_204-1491911889:53807..54078Clytia hemisphaericaexon
TCONS_00051756-exon-scaffold_204-1491911889:53486..53617TCONS_00051756-exon-scaffold_204-1491911889:53486..53617Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051756-proteinTCONS_00051756-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:53486..55341 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.104654	0.102054	0	0	0.141132	0	0.403648	0.503854	0.44095	0.109238	0.106029	0.139398	0.139204	0.0722825	0.118852	0.127547	0	0.3221	0	0	0.101186	0.296129	0	0	0.224725	0.100281	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051756 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top