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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051756 ID=TCONS_00051756|Name=TCONS_00051756|organism=Clytia hemisphaerica|type=transcript|length=548bp ATTACACCATAAATGAATTAAGCCCTTCAATACGatATCAAAGAAAATAC AGATTATTTGCGGGGCTGTGGTTTGATCTGAAGAAGCCACACTTCAAAAC CTTTTTGATGCCCTTTGTTACAGAGCTGCAAGAGTTTGCTCAAGggAAAC CGCTGAAAACTACTGCTGGTCCAAAAACTGTCAAGGTCCATCTTCTTTCT GGAGTTTTTGATGCCCCTGCAAAGTGCCAGTTTCAAAACATTGTTCAATT CAATGGGGAATATGGCTGTCCATACTGCCTTGAACCTGGAATAACAGTGA AAGCTGGGAAAGGTCATACCCATTGTTACCCTTTCAATTTTGATAGTAAA ACAGGTCATGCAGCACTGCGAACACATAATCAAACACTGAAACATGCCAA AGAAGCACAAAAGAAGATGATGGAGAGTGGAAAGGAGGTGAAGATATGTG GGGTTAAAGGCTTATCGTGGTCCATGAGAATTCCTTGTTTCGATGTTGTC AATGGATTGGCTCTGGACTACTTACACAATACATTACTGGGTGTTGTC Run BLAST on NCBI protein sequence of TCONS_00051756-protein >TCONS_00051756-protein ID=TCONS_00051756-protein|Name=TCONS_00051756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
YTINELSPSIRYQRKYRLFAGLWFDLKKPHFKTFLMPFVTELQEFAQGKP LKTTAGPKTVKVHLLSGVFDAPAKCQFQNIVQFNGEYGCPYCLEPGITVK AGKGHTHCYPFNFDSKTGHAALRTHNQTLKHAKEAQKKMMESGKEVKICG VKGLSWSMRIPCFDVVNGLALDYLHNTLLGVV Run BLAST on NCBI transcript from alignment at scaffold_204:53486..55341- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051756 ID=TCONS_00051756|Name=TCONS_00051756|organism=Clytia hemisphaerica|type=transcript|length=1856bp|location=Sequence derived from alignment at scaffold_204:53486..55341- (Clytia hemisphaerica) ATTACACCATAAATGAATTAAGCCCTTCAATACGGTAAGAACAGTAGTTT
GTTAATATTACGTTAATAAGTTTACATCATTCTTTTTTGTACTTAGTAAA
TTTAGTGGATTCTAATATATTTTTTATAGATATCAAAGAAAATACAGATT
ATTTGCGGGGCTGTGGTTTGATCTGAAGAAGCCACACTTCAAAACCTTTT
TGATGCCCTTTGTTACAGAGCTGCAAGAGTTTGCTCAAGGTATTCTTATT
GATCACTTCATGATACCTTATTGATCACTTTATGATACTTTGTTAATTTT
GTGCTGGAGTTTTGGTTGCCTTTTGATATTCTATATTTAGTAGCAATACT
TAATCATATATATAACACCTAAAAGTCACTTTCTGATTTTTTCACCTTGA
TTTCTCCCATATTTAGTTTTGAAATTACATGTTCTTCGATGTAGTCGATA
TCTTTCTTATCCGCTATCTCTTTCGTGTCTTCTGTAGTTTCATACAGGTA
TCATGAGATTACACGAAGTCGCTTCAATCCATTTTTTATCCGTTTTTTCT
TTTTCAATGAAACGCTTAATCGTTTTTGTTTGCGACTCGAGATGCTTCTT
GGTTATTTCTGAATAACTTGATTTCTCACAAGCTATTTCATTCACAGACG
AAGATTTCTTGTTTGCCATTTTATTTATTTTGCTTTCCAGCACGTCAATT
CTTTTATTGAAGGTGTTCTCAATTTTTGCGACTGCTTTATTCACATTGTT
AGTTGACACATCAGCTTTCAAATTTGAAATTTCCTCACGTTGTGCTTTTA
TTATATTCTCACATGCATTGATCTCCTTTTATAAATCTCCAACAGACTTG
AAATTCAATTTCTTCTTCAATTCTGGTGTTATGATGACACAGCTCATGCA
TTGATAGCTTCTAGATTTGTGTTGAAGATAGAGCTGGATTTGATAAGGAG
GAAGCTCAGAGCAAGCTAAATGAACTCGACGTTCGCATTTCTTGCATTGT
AACGTGTCTTTTTTATTTGTACTTGCATGAATGAGGCAGCTTGATGGGGT
ACAAGAACCAATTTCCTCGGATTTTCCTTCAAATTTTCGAGTTATTTCTG
CCATTTTGTGCACATTTTTTGCTGCTCTCACGATGCGACTGTATTTGAAT
AAGAACTTTCTATTAGAATAGGCTAAAATGTGCTGAGGTGACCTTGATGT
TTCAACAAAAAAAGAATACATTTAGACATGCCTTAAGACCCAATAAAAAC
TTTTTTCTTTCAGGGAAACCGCTGAAAACTACTGCTGGTCCAAAAACTGT
CAAGGTCCATCTTCTTTCTGGAGTTTTTGATGCCCCTGCAAAGTGCCAGT
TTCAAAACATTGTTCAATTCAATGGGGAATATGGCTGTCCATACTGCCTT
GAACCTGGAATAACAGTGAAAGCTGGGAAAGGTCATACCCATTGTTACCC
TTTCAATTTTGATAGTAAAACAGGTCATGCAGCACTGCGAACACATAATC
AAACACTGAAACATGCCAAAGAAGCACAAAAGAAGGTAAATTTGGTGTTT
AAATCAAGATGAATAACTTCTACAATGAGATTAAATTTGACAGATTTCAA
AGATATAGGGTTTGAGATTTGAAAAATGCTCATGAAGGTTTTTATCTTTT
TCAGAAGAGACAAAAATTTGAAAATTCATTTGGGCAGAATAAACTTTCAA
CTCCTTTCAACCTTTTTAAATTAGATGATGGAGAGTGGAAAGGAGGTGAA
GATATGTGGGGTTAAAGGCTTATCGTGGTCCATGAGAATTCCTTGTTTCG
ATGTTGTCAATGGATTGGCTCTGGACTACTTACACAATACATTACTGGGT
GTTGTC Coding sequence (CDS) from alignment at scaffold_204:53486..55341- >TCONS_00051756 ID=TCONS_00051756|Name=TCONS_00051756|organism=Clytia hemisphaerica|type=CDS|length=2184bp|location=Sequence derived from alignment at scaffold_204:53486..55341- (Clytia hemisphaerica) ATGATGGAGAGTGGAAAGGAGGTGAAGATATGTGGGGTTAAAGGCTTATC GTGGTCCATGAGAATTCCTTGTTTCGATGTTGTCAATGGATTGGCTCTGG ACTACTTACACAATACATTACTGGGTGTTGTCGGAAACCGCTGAAAACTA CTGCTGGTCCAAAAACTGTCAAGGTCCATCTTCTTTCTGGAGTTTTTGAT GCCCCTGCAAAGTGCCAGTTTCAAAACATTGTTCAATTCAATGGGGAATA TGGCTGTCCATACTGCCTTGAACCTGGAATAACAGTGAAAGCTGGGAAAG GTCATACCCATTGTTACCCTTTCAATTTTGATAGTAAAACAGGTCATGCA GCACTGCGAACACATAATCAAACACTGAAACATGCCAAAGAAGCACAAAA GAAGATATCAAAGAAAATACAGATTATTTGCGGGGCTGTGGTTTGATCTG AAGAAGCCACACTTCAAAACCTTTTTGATGCCCTTTGTTACAGAGCTGCA AGAGTTTGCTCAAGTACACCATAAATGAATTAAGCCCTTCAATACGATGA TGGAGAGTGGAAAGGAGGTGAAGATATGTGGGGTTAAAGGCTTATCGTGG TCCATGAGAATTCCTTGTTTCGATGTTGTCAATGGATTGGCTCTGGACTA CTTACACAATACATTACTGGGTGTTGTCGGAAACCGCTGAAAACTACTGC TGGTCCAAAAACTGTCAAGGTCCATCTTCTTTCTGGAGTTTTTGATGCCC CTGCAAAGTGCCAGTTTCAAAACATTGTTCAATTCAATGGGGAATATGGC TGTCCATACTGCCTTGAACCTGGAATAACAGTGAAAGCTGGGAAAGGTCA TACCCATTGTTACCCTTTCAATTTTGATAGTAAAACAGGTCATGCAGCAC TGCGAACACATAATCAAACACTGAAACATGCCAAAGAAGCACAAAAGAAG ATATCAAAGAAAATACAGATTATTTGCGGGGCTGTGGTTTGATCTGAAGA AGCCACACTTCAAAACCTTTTTGATGCCCTTTGTTACAGAGCTGCAAGAG TTTGCTCAAGTACACCATAAATGAATTAAGCCCTTCAATACGATGATGGA GAGTGGAAAGGAGGTGAAGATATGTGGGGTTAAAGGCTTATCGTGGTCCA TGAGAATTCCTTGTTTCGATGTTGTCAATGGATTGGCTCTGGACTACTTA CACAATACATTACTGGGTGTTGTCGGAAACCGCTGAAAACTACTGCTGGT CCAAAAACTGTCAAGGTCCATCTTCTTTCTGGAGTTTTTGATGCCCCTGC AAAGTGCCAGTTTCAAAACATTGTTCAATTCAATGGGGAATATGGCTGTC CATACTGCCTTGAACCTGGAATAACAGTGAAAGCTGGGAAAGGTCATACC CATTGTTACCCTTTCAATTTTGATAGTAAAACAGGTCATGCAGCACTGCG AACACATAATCAAACACTGAAACATGCCAAAGAAGCACAAAAGAAGATAT CAAAGAAAATACAGATTATTTGCGGGGCTGTGGTTTGATCTGAAGAAGCC ACACTTCAAAACCTTTTTGATGCCCTTTGTTACAGAGCTGCAAGAGTTTG CTCAAGTACACCATAAATGAATTAAGCCCTTCAATACGATGATGGAGAGT GGAAAGGAGGTGAAGATATGTGGGGTTAAAGGCTTATCGTGGTCCATGAG AATTCCTTGTTTCGATGTTGTCAATGGATTGGCTCTGGACTACTTACACA ATACATTACTGGGTGTTGTCGGAAACCGCTGAAAACTACTGCTGGTCCAA AAACTGTCAAGGTCCATCTTCTTTCTGGAGTTTTTGATGCCCCTGCAAAG TGCCAGTTTCAAAACATTGTTCAATTCAATGGGGAATATGGCTGTCCATA CTGCCTTGAACCTGGAATAACAGTGAAAGCTGGGAAAGGTCATACCCATT GTTACCCTTTCAATTTTGATAGTAAAACAGGTCATGCAGCACTGCGAACA CATAATCAAACACTGAAACATGCCAAAGAAGCACAAAAGAAGATATCAAA GAAAATACAGATTATTTGCGGGGCTGTGGTTTGATCTGAAGAAGCCACAC TTCAAAACCTTTTTGATGCCCTTTGTTACAGAGCTGCAAGAGTTTGCTCA AGTACACCATAAATGAATTAAGCCCTTCAATACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00051756-exon-scaffold_204-1575043694:55308..55341 | TCONS_00051756-exon-scaffold_204-1575043694:55308..55341 | Clytia hemisphaerica | exon |
TCONS_00051756-exon-scaffold_204-1575043694:55103..55212 | TCONS_00051756-exon-scaffold_204-1575043694:55103..55212 | Clytia hemisphaerica | exon |
TCONS_00051756-exon-scaffold_204-1575043694:53807..54078 | TCONS_00051756-exon-scaffold_204-1575043694:53807..54078 | Clytia hemisphaerica | exon |
TCONS_00051756-exon-scaffold_204-1575043694:53486..53617 | TCONS_00051756-exon-scaffold_204-1575043694:53486..53617 | Clytia hemisphaerica | exon |
TCONS_00051756-exon-scaffold_204-1510915933:55308..55341 | TCONS_00051756-exon-scaffold_204-1510915933:55308..55341 | Clytia hemisphaerica | exon |
TCONS_00051756-exon-scaffold_204-1510915933:55103..55212 | TCONS_00051756-exon-scaffold_204-1510915933:55103..55212 | Clytia hemisphaerica | exon |
TCONS_00051756-exon-scaffold_204-1510915933:53807..54078 | TCONS_00051756-exon-scaffold_204-1510915933:53807..54078 | Clytia hemisphaerica | exon |
TCONS_00051756-exon-scaffold_204-1510915933:53486..53617 | TCONS_00051756-exon-scaffold_204-1510915933:53486..53617 | Clytia hemisphaerica | exon |
TCONS_00051756-exon-scaffold_204-1491911889:55308..55341 | TCONS_00051756-exon-scaffold_204-1491911889:55308..55341 | Clytia hemisphaerica | exon |
TCONS_00051756-exon-scaffold_204-1491911889:55103..55212 | TCONS_00051756-exon-scaffold_204-1491911889:55103..55212 | Clytia hemisphaerica | exon |
TCONS_00051756-exon-scaffold_204-1491911889:53807..54078 | TCONS_00051756-exon-scaffold_204-1491911889:53807..54078 | Clytia hemisphaerica | exon |
TCONS_00051756-exon-scaffold_204-1491911889:53486..53617 | TCONS_00051756-exon-scaffold_204-1491911889:53486..53617 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_204 | supercontig | scaffold_204:53486..55341 - |
Blast
The following BLAST results are available for this feature:
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