TCONS_00051760 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051760
Unique NameTCONS_00051760
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051760 ID=TCONS_00051760|Name=TCONS_00051760|organism=Clytia hemisphaerica|type=transcript|length=1405bp
CGATCTGTGAAGTTGGTGTTTAGGGGTGTTGTAGTTCTTTTAACTACCTT
TACCCATTGGggatttttgttattttacttAAGTTTCTGTACCCAGCCTA
CTGAACTTGTGGAATTACTGATTAAAATTTATATATACAGTGGAAAAGAC
ATGGAGATAGTAAgagatttaatttaattttaagtaaggatttaatttaa
ttttaagtaaGGATTAAGAGGATTTTAGAAGAGTATTAGTTTTAATTTAT
TAGTGGTCGAGAAAGTGCATGGACTTTATGATAGATTTAtttaataaaag
aaaagaaagGATGGATTGAAGATGGAAACAGATATCTAGGTGGATTGTAC
ATGGCCAAACTTTAGACACTTTTTACATTGAATGATGTAATTATCAATGG
GATCAAATTTTCTAACGAAGTGTTTGGTTATTTTGTTATTGGCTTTGATG
GAGGAATTCGATTTCAGTGACGTCGATCTCACATATTAAAGTAGAGGATT
TAGTGTGTGCCTCAGTAGCAGAAAGGAAGGAAAAATTACTAATGTGAGAG
TTTAAGTCTTCTAAATTATATGGTTTATTAAACGAATGATCATGAAGTAT
tacttttatctttttctttttgggtCTTTCTTGGATGAAAGGATTTCTAG
GTGTTCTTTTGGTCTCAAAGCCTGTTTCTAACATTTCTTCATCAGAGTGT
GTTTCTTGAGGTTTAATTATGGAAGGATTTAATTTTGAAGAAGAAGGATT
ATTTTCAGAAGATTTTAATTTAGTAGAAGAGCGGTTATTTTCGAGAGATT
TTAATTTGGAGGAGGAAGACAAGTCAGAATTTTCAGAGTTAGAAGTAGTA
GAGGATTGTGAGTTAGAACGAGAACGTGGTTTAATAATTCTGGAAATGCC
AAAGTGgactttttgtttcttctgaGAGTTAAAATCAGCTTTTAAGTCTT
CAATGTTGTGACTTACATCATCAAGAGGAGATGGAGGACCTCTTTTGGTA
CTATTTGACATAGTGTGGTGACGTAAGTGTCAGAGAAGATAAGATAATTA
AAAGAAGAGATTACTAAACAGACAGAGGTATTTCAAATTAGCAAACAGGA
ACAAGAAGTACACTAGGCCCAATGTACTTCGGGGCCGAAGCCCCTCTATC
aacgattaaaaactttaaaaacctCTCTTGTATCAAGATTATGGTATATG
ATCCGCTttcacactgaagtgattaacgcgtttggaaaaaaaaatttttt
tttgtattgttAAGTGATATATTATAAAAGTATTGGTATATTTTTTCCGC
TttcacactgaagtgattaacgcGTTTTGTAAAATTAATTATTGTAAAAT
GTATAAACAACAAGAAACGTTTGGTTTTTTGCAGTAGAACTGAAACCAAA
CCGGC
Run BLAST on NCBI

transcript from alignment at scaffold_204:117069..122251-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051760 ID=TCONS_00051760|Name=TCONS_00051760|organism=Clytia hemisphaerica|type=transcript|length=5183bp|location=Sequence derived from alignment at scaffold_204:117069..122251- (Clytia hemisphaerica)
CGATCTGTGAAGTTGGTGTTTAGGGGTGTTGTAGTTCTTTTAACTACCTT
TACCCATTGGGGATTTTTGTTATTTTACTTAAGTTTCTGTACCCAGCCTA
CTGAACTTGTGGAATTACTGATTAAAATTTATATATACAGTGGAAAAGAC
ATGGAGATAGTAAGAGATTTAATTTAATTTTAAGTAAGGATTTAATTTAA
TTTTAAGTAAGGATTAAGAGGATTTTAGAAGAGTATTAGTTTTAATTTAT
TAGTGGTCGAGAAAGTGCATGGACTTTATGATAGATTTATTTAATAAAAG
AAAAGAAAGGTATGTATATAATACATATATAAGGTTTATAATATTAACTT
AATGGGTTAAAATGTTTACTAAAACGTAACGATGTACATAAAGTACATAT
AAAATGTTTTTGATGGAAAAAAGTTGNNNNNNNNNNNNNNNNNNNNNNNN
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TGAAGCCAGATTGTTCCTTATTTATAATATTATTTTCCTCAGCCCAGCAA
TTAATTCTATTAGCCAAAATTTTTTCAAAAAGTTTACCTATGGCAGGTAA
AAGGCTTATAGGTCTATGGTCGGGAATTTTCTTGGAGTTCTTTACTTTAG
GAATCATTGTGATTTTGGCTATTTTTAATGTATCTGGAAAAATGGAATTA
TTTAACCAGTCATTAAAAAGAGAAGATAGTGGTGATATAAGAATAGGAGA
AAGTGTGGAGAGAAGTTTATTTTGTATGGCATCATGACCTGGTGCTTTGT
GGACTTTGAGGCTTTTAAGGACATTAGCTACTTCTTGGTCTGTTATTTTT
TCATCTATTTCGTGCCTGGTTAATAGTGGGTCTAACATGTGGTAGATTGA
ATGTCGTTCTCTTCTGTGGAATTGGGTGTTTTCGAACCAGTGGTCTACAA
CGTACTTATGTCTTCTATCATTTGATNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGGATTCTTGTAGTAATAGA
GAGGTTGTTTCTAGTTCTTCTATTGACTGCATGAAAGTTTCTTTACTGAA
GTTGCTGTTATGTCTTTTTAGGATGGATTGAAGATGGAAACAGATATCTA
GGTGAGTTGTCATTTTCTGTTGTTCGATGGCGTAGCAAATTTCAAAGAGG
ATTAAAGAGAAAGATTCAAAGTTTACAGATTTTTGGGAAAGAGATAGGAT
TTCGGAGGAGAGTTCAGATGAAAGGTTTTCTTTGGTGACATAATTGTCTT
TTATATCTTCTATGTGCTCAAATATGATTTTATTTTGGTTTTCAACTTTT
TCTAGACGTGTGGATATGGAGTTTATTACATTATTTACTTTCGTGACATT
TTTCTCGAGAGCTGAAAATTTTTCAAAGATAGTTTCTGTGTTGACCGTAA
TTTTTTCCAGAAGAGTGGCTAATTCTGTTACTTGGGATTTGACTAAACCC
ATACCTTCTGTACAACTATTGACACTTGTTTTCAAAGATTCAGATTCTTT
ACCAAAGTTTGCAACCTGTGCATAAGATTTTTCTAGTTGGGAATACGAAC
TTTTAACTTCTTTGACAGAATTGTTAATGGCAGAAATTTTGGTGGATCTT
TGTCTGTCTTGTCGTGTGATGGTGGCTTTTTCTACTAGTCTCTTGTAAAC
GGAGCAGCCTCTATAAAATGATGAATGGTTTTTCTCACAATTGACACACT
TTTTCTGATTACATTTTTTCCTACAATCTTCTTTTCCACACCAGCTACAC
AAGGAGTTTTTTTGTTTACAGGTGGATTGTACATGGCCAAACTTTAGACA
CTTTTTACATTGAATGATGTAATTATCAATGGGATCAAATTTTCTAACGA
AGTGTTTGGTTATTTTGTTATTGGCTTTGATGGTGAGTGGAAATTCTTCT
TCTATGTCTCCTTTTAGGACCTCAAAAACAACAAGATTACCTTCTCTTCT
AAGATTATATACTTTTTTTCACATGATATTCCAGATGGTCAAAGACTAAT
TGGAGAGAAATAGGGGGGCCAGCTTCTGATTCCATGGCTAATTTATTAAT
ACAAAAACTATCAAGAAGATTAGATTTTTTATCTATCGATAAAGTGTTTA
TTTTTTCACTCCAATTGTCTTTATCAAGGAGGAATTCGATTTCAGTGACG
TCGATCTCACATATTAAAGTAGAGGATTTAGTGTGTGCCTCAGTAGCAGA
AAGGAAGGAAAAATTACTAATGTGAGAGTTTAAGTCTTCTAAATTATATG
GTTTATTAAACGAATGATCATGAAGTATTACTTTTATCTTTTTCTTTTTG
GGTCTTTCTTGGATGAAAGGATTTCTAGGTGTTCTTTTGGTCTCAAAGCC
TGTTTCTAACATTTCTTCATCAGAGTGTGTTTCTTGAGGTTTAATTATGG
AAGGATTTAATTTTGAAGAAGAAGGATTATTTTCAGAAGATTTTAATTTA
GTAGAAGAGCGGTTATTTTCGAGAGATTTTAATTTGGAGGAGGAAGACAA
GTCAGAATTTTCAGAGTTAGAAGTAGTAGAGGATTGTGAGTTAGAACGAG
AACGTGGTTTAATAATTCTGGAAATGCCAAAGTGGACTTTTTGTTTCTTC
TGAGAGTTAAAATCAGCTTTTAAGTCTTCAATGTTGTGACTTACATCATC
AAGAGGAGATGGAGGACCTCTTTTGGTACTATTTGACATAGTGTGGTGAC
GTAAGTGTCAGAGAAGATAAGATAATTAAAAGAAGAGATTACTAAACAGA
CAGAGGTATTTCAAATTAGCAAACAGGAACAAGAAGTACACTAGGCCCAA
TGTACTTCGGGGCCGAAGCCCCTCTATCAACGATTAAAAACTTTAAAAAC
CTCTCTTGTATCAAGATTATGGTATATGATCCGCTTTCACACTGAAGTGA
TTAACGCGTTTGGAAAAAAAAATTTTTTTTTGTATTGTTAAGTGATATAT
TATAAAAGTATTGGTATATTTTTTCCGCTTTCACACTGAAGTGATTAACG
CGTTTTGTAAAATTAATTATTGTAAAATGTATAAACAACAAGAAACGTTT
GGTTTTTTGCAGTAGAACTGAAACCAAACCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032768XLOC_032768Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051760-exon-scaffold_204-1575043694:121943..122251TCONS_00051760-exon-scaffold_204-1575043694:121943..122251Clytia hemisphaericaexon
TCONS_00051760-exon-scaffold_204-1575043694:119051..119080TCONS_00051760-exon-scaffold_204-1575043694:119051..119080Clytia hemisphaericaexon
TCONS_00051760-exon-scaffold_204-1575043694:118270..118380TCONS_00051760-exon-scaffold_204-1575043694:118270..118380Clytia hemisphaericaexon
TCONS_00051760-exon-scaffold_204-1575043694:117069..118023TCONS_00051760-exon-scaffold_204-1575043694:117069..118023Clytia hemisphaericaexon
TCONS_00051760-exon-scaffold_204-1510915933:121943..122251TCONS_00051760-exon-scaffold_204-1510915933:121943..122251Clytia hemisphaericaexon
TCONS_00051760-exon-scaffold_204-1510915933:119051..119080TCONS_00051760-exon-scaffold_204-1510915933:119051..119080Clytia hemisphaericaexon
TCONS_00051760-exon-scaffold_204-1510915933:118270..118380TCONS_00051760-exon-scaffold_204-1510915933:118270..118380Clytia hemisphaericaexon
TCONS_00051760-exon-scaffold_204-1510915933:117069..118023TCONS_00051760-exon-scaffold_204-1510915933:117069..118023Clytia hemisphaericaexon
TCONS_00051760-exon-scaffold_204-1491911889:121943..122251TCONS_00051760-exon-scaffold_204-1491911889:121943..122251Clytia hemisphaericaexon
TCONS_00051760-exon-scaffold_204-1491911889:119051..119080TCONS_00051760-exon-scaffold_204-1491911889:119051..119080Clytia hemisphaericaexon
TCONS_00051760-exon-scaffold_204-1491911889:118270..118380TCONS_00051760-exon-scaffold_204-1491911889:118270..118380Clytia hemisphaericaexon
TCONS_00051760-exon-scaffold_204-1491911889:117069..118023TCONS_00051760-exon-scaffold_204-1491911889:117069..118023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:117069..122251 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.141894	0.416614	0.257262	0.362959	0.22708	0.113385	0.0981219	0.240745	0	0.815125	0.297133	0.314286	0.2715	0.605161	0.454216	0.40333	0.367565	0.539275	0.397387	0.182016	0.182211	0.177321	0.144905	0	0.215544	0.414995	1.00537	0.464585	0.590706
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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