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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051770 ID=TCONS_00051770|Name=TCONS_00051770|organism=Clytia hemisphaerica|type=transcript|length=1664bp
tttcatttatttatttttttgttccattagcgaaaataacttgtaaaaag
ttcatgctaataaagaaatagaaatagaaatagaaacgcCAACGAGAATC
CATCATGTCGGTGTCCATTTTCAAAAGCTTGTCCTTGTTGTCGGTGAGTA
CCATTGTCAGCTTGGCAGAAGCGAGGAAAGGAATCTTGTTCGTCTTGTGG
ATGGTCAAGTCGGTGGTAAAAGCGTTCTTTGGTCGAGCCAAGTGGACGGT
TTGACCTTCCAACAAGATCAGGAAGTCTGTCCACTTAATCAATTCTGGTG
ACCAGCTCAGGTCCTGTAAAACAcacacttcacatttctcaaGACCGACC
CATATTTGCCCTCTGTCGGGTTCATAAAACATTTGAACATATCCTCTAAT
GGGTTTAATAAGAATGATTTGCCGCAATTCTTGGGCCCGAACAAATAAAT
GTTATGATACTTGGCACGTCCAACAGTCAGGCATTTGCGCATATGCTCGG
CAAACTTAAAAGCATTGATGTTATTGTTTTGTAAAATCTCAAGAGCAGCA
TCGAGCCAGGTCTCTTCGCAGCCCTCAACACACGGCttaactaaaaaaaa
taagcactgCGTCCATGCGTGTCAGCTCTTGACACTTAGCTTTCTCGGGT
GCCTCCTCAAGCCTCCACACCATCGTCAAAATATCGGCAATTGTTTTCGG
TGACTGTTCTGAAACATATTTGTAAACGTCAGGTAGGCCCTCCACTTCCT
GCTTCTTGGCTGCCGCAAGAAGTTCCTCCTCAGTTCGGAGGTTGTTGCAC
CTGATGAATTTTATAACATTGTTCTTACGTAGCCTTGATTGAAATTCAGC
GGGAGGTGTATTAGCTGGACGAGGAGCTTGGGGTGGGTTGGTCGGCTGAG
AGTTGGAAGCTGTAGCTGCACGGGACGTAGTCGGTCGTTCTACTGATGGT
CGCGGAGGGGCTGACTTGTGACGTCTCTCTGCGTTCTGGGACGACGTAAC
AAAACCTTTATTTGCCTTTGGCGAACGTGCACTTGTCAAGTCTCCGTGGC
CCAGGCTATGAACCACCATTTCTGATGGCTTATCTTTGATGATGTATTTA
TAGCCCCTCAAGTATCCCTTATTGGTGTGTGAAAAGTTCACGTTTATGCC
CCATTTACGTTTCATTGCCTCAAACCAGGGCTTCCATCTTCGTGTACCGT
TTAATTTCAATATCATATGGTAATGTTTACCACCATTTGCACGAGGCTCC
TGGCAGGCTGCCCAGTCCACTATTTCAACCTTACACTGTGTGGGATCATT
GTATGCCTCCAGTACAATATCTGCAAATGTTCTTGAGTTAGGTACTTTAT
CCAGGTCAGCCTGACTATAGGTCAAAAGATAAGTCCTGAAAGGATCATTT
TCTTCACAAGGTGTAGAGAATTCATCAGTTGCAGcttccgccatcttgtt
ttcaatctgaaatttcaaattttcccgCCGAAAAAATGCTCTCGAATTTT
CCcgccaaaaagtttgtttatcttttctcTGGATTCGAAATAGGCTCGGA
AACTCAGTTCACTGGATTTGTGATTCGAAATTCATAATGTCGGCCAAGAA
AGCATGGTCTGGAAGTCTGTAGGCCTTCAACCTTGGAAAATGTTGTAATT
TGGGCttgttttta Run BLAST on NCBI protein sequence of TCONS_00051770-protein >TCONS_00051770-protein ID=TCONS_00051770-protein|Name=TCONS_00051770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
MAEAATDEFSTPCEENDPFRTYLLTYSQADLDKVPNSRTFADIVLEAYND
PTQCKVEIVDWAACQEPRANGGKHYHMILKLNGTRRWKPWFEAMKRKWGI
NVNFSHTNKGYLRGYKYIIKDKPSEMVVHSLGHGDLTSARSPKANKGFVT
SSQNAERRHKSAPPRPSVERPTTSRAATASNSQPTNPPQAPRPANTPPAE
FQSRLRKNNVIKFIRCNNLRTEEELLAAAKKQEVEGLPDVYKYVSEQSPK
TIADILTMVWRLEEAPEKAKCQELTRMDAVLIFFS Run BLAST on NCBI transcript from alignment at scaffold_204:91599..93262 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051770 ID=TCONS_00051770|Name=TCONS_00051770|organism=Clytia hemisphaerica|type=transcript|length=1664bp|location=Sequence derived from alignment at scaffold_204:91599..93262 (Clytia hemisphaerica)
taaaaacaaGCCCAAATTACAACATTTTCCAAGGTTGAAGGCCTACAGAC
TTCCAGACCATGCTTTCTTGGCCGACATTATGAATTTCGAATCACAAATC
CAGTGAACTGAGTTTCCGAGCCTATTTCGAATCCAgagaaaagataaaca
aactttttggcgGGAAAATTCGAGAGCATTTTTTCGGcgggaaaatttga
aatttcagattgaaaacaagatggcggaagCTGCAACTGATGAATTCTCT
ACACCTTGTGAAGAAAATGATCCTTTCAGGACTTATCTTTTGACCTATAG
TCAGGCTGACCTGGATAAAGTACCTAACTCAAGAACATTTGCAGATATTG
TACTGGAGGCATACAATGATCCCACACAGTGTAAGGTTGAAATAGTGGAC
TGGGCAGCCTGCCAGGAGCCTCGTGCAAATGGTGGTAAACATTACCATAT
GATATTGAAATTAAACGGTACACGAAGATGGAAGCCCTGGTTTGAGGCAA
TGAAACGTAAATGGGGCATAAACGTGAACTTTTCACACACCAATAAGGGA
TACTTGAGGGGCTATAAATACATCATCAAAGATAAGCCATCAGAAATGGT
GGTTCATAGCCTGGGCCACGGAGACTTGACAAGTGCACGTTCGCCAAAGG
CAAATAAAGGTTTTGTTACGTCGTCCCAGAACGCAGAGAGACGTCACAAG
TCAGCCCCTCCGCGACCATCAGTAGAACGACCGACTACGTCCCGTGCAGC
TACAGCTTCCAACTCTCAGCCGACCAACCCACCCCAAGCTCCTCGTCCAG
CTAATACACCTCCCGCTGAATTTCAATCAAGGCTACGTAAGAACAATGTT
ATAAAATTCATCAGGTGCAACAACCTCCGAACTGAGGAGGAACTTCTTGC
GGCAGCCAAGAAGCAGGAAGTGGAGGGCCTACCTGACGTTTACAAATATG
TTTCAGAACAGTCACCGAAAACAATTGCCGATATTTTGACGATGGTGTGG
AGGCTTGAGGAGGCACCCGAGAAAGCTAAGTGTCAAGAGCTGACACGCAT
GGACGcagtgcttattttttttagttaaGCCGTGTGTTGAGGGCTGCGAA
GAGACCTGGCTCGATGCTGCTCTTGAGATTTTACAAAACAATAACATCAA
TGCTTTTAAGTTTGCCGAGCATATGCGCAAATGCCTGACTGTTGGACGTG
CCAAGTATCATAACATTTATTTGTTCGGGCCCAAGAATTGCGGCAAATCA
TTCTTATTAAACCCATTAGAGGATATGTTCAAATGTTTTATGAACCCGAC
AGAGGGCAAATATGGGTCGGTCttgagaaatgtgaagtgtgTGTTTTACA
GGACCTGAGCTGGTCACCAGAATTGATTAAGTGGACAGACTTCCTGATCT
TGTTGGAAGGTCAAACCGTCCACTTGGCTCGACCAAAGAACGCTTTTACC
ACCGACTTGACCATCCACAAGACGAACAAGATTCCTTTCCTCGCTTCTGC
CAAGCTGACAATGGTACTCACCGACAACAAGGACAAGCTTTTGAAAATGG
ACACCGACATGATGGATTCTCGTTGgcgtttctatttctatttctatttc
tttattagcatgaactttttacaagttattttcgctaatggaacaaaaaa
ataaataaatgaaa Coding sequence (CDS) from alignment at scaffold_204:91599..93262 >TCONS_00051770 ID=TCONS_00051770|Name=TCONS_00051770|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_204:91599..93262 (Clytia hemisphaerica)
atggcggaagCTGCAACTGATGAATTCTCTACACCTTGTGAAGAAAATGA
TCCTTTCAGGACTTATCTTTTGACCTATAGTCAGGCTGACCTGGATAAAG
TACCTAACTCAAGAACATTTGCAGATATTGTACTGGAGGCATACAATGAT
CCCACACAGTGTAAGGTTGAAATAGTGGACTGGGCAGCCTGCCAGGAGCC
TCGTGCAAATGGTGGTAAACATTACCATATGATATTGAAATTAAACGGTA
CACGAAGATGGAAGCCCTGGTTTGAGGCAATGAAACGTAAATGGGGCATA
AACGTGAACTTTTCACACACCAATAAGGGATACTTGAGGGGCTATAAATA
CATCATCAAAGATAAGCCATCAGAAATGGTGGTTCATAGCCTGGGCCACG
GAGACTTGACAAGTGCACGTTCGCCAAAGGCAAATAAAGGTTTTGTTACG
TCGTCCCAGAACGCAGAGAGACGTCACAAGTCAGCCCCTCCGCGACCATC
AGTAGAACGACCGACTACGTCCCGTGCAGCTACAGCTTCCAACTCTCAGC
CGACCAACCCACCCCAAGCTCCTCGTCCAGCTAATACACCTCCCGCTGAA
TTTCAATCAAGGCTACGTAAGAACAATGTTATAAAATTCATCAGGTGCAA
CAACCTCCGAACTGAGGAGGAACTTCTTGCGGCAGCCAAGAAGCAGGAAG
TGGAGGGCCTACCTGACGTTTACAAATATGTTTCAGAACAGTCACCGAAA
ACAATTGCCGATATTTTGACGATGGTGTGGAGGCTTGAGGAGGCACCCGA
GAAAGCTAAGTGTCAAGAGCTGACACGCATGGACGcagtgcttatttttt
ttagttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051770-exon-scaffold_204-1491911889:91599..93262 | TCONS_00051770-exon-scaffold_204-1491911889:91599..93262 | Clytia hemisphaerica | exon |
| TCONS_00051770-exon-scaffold_204-1510915933:91599..93262 | TCONS_00051770-exon-scaffold_204-1510915933:91599..93262 | Clytia hemisphaerica | exon |
| TCONS_00051770-exon-scaffold_204-1575043694:91599..93262 | TCONS_00051770-exon-scaffold_204-1575043694:91599..93262 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_204 | supercontig | scaffold_204:91599..93262 . |
Blast
The following BLAST results are available for this feature:
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