TCONS_00051772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051772
Unique NameTCONS_00051772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051772 ID=TCONS_00051772|Name=TCONS_00051772|organism=Clytia hemisphaerica|type=transcript|length=364bp
GTGCTTTTTACCTTAAAAAATCCTTGGTTCATATTCAAGTGGCCAAGACC
AGGTTGCATAGCTAACCAATCATATGCCTTTGGGTTTCGATCAATGAGTC
TATTTGCTAAACAGTATGGTGGGCCATCGCAGCCAACAAATGTCCATTCT
CTTCCTCTCCTAATGGCAAGGTTCTCCTTCAGCTGCTTTAAAATAAGTTC
CAAGTTTTCATAGCTGTTTGGATTGAACAATATTGGTTCACCAACCTTCA
TAGGACACGTGTTGATGTTTTGTGTTTCACCAAGAGGGAGATATTTGGCA
CCTTCAGATGTAGTTGGTTTCTTCGATTCTTTTAACTTCAGAACTACACT
TGTCGCATTTTCTC
Run BLAST on NCBI

protein sequence of TCONS_00051772-protein

>TCONS_00051772-protein ID=TCONS_00051772-protein|Name=TCONS_00051772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
ENATSVVLKLKESKKPTTSEGAKYLPLGETQNINTCPMKVGEPILFNPNS
YENLELILKQLKENLAIRRGREWTFVGCDGPPYCLANRLIDRNPKAYDWL
AMQPGLGHLNMNQGFFKVKS
Run BLAST on NCBI

transcript from alignment at scaffold_204:103265..103628

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051772 ID=TCONS_00051772|Name=TCONS_00051772|organism=Clytia hemisphaerica|type=transcript|length=364bp|location=Sequence derived from alignment at scaffold_204:103265..103628 (Clytia hemisphaerica)
GAGAAAATGCGACAAGTGTAGTTCTGAAGTTAAAAGAATCGAAGAAACCA
ACTACATCTGAAGGTGCCAAATATCTCCCTCTTGGTGAAACACAAAACAT
CAACACGTGTCCTATGAAGGTTGGTGAACCAATATTGTTCAATCCAAACA
GCTATGAAAACTTGGAACTTATTTTAAAGCAGCTGAAGGAGAACCTTGCC
ATTAGGAGAGGAAGAGAATGGACATTTGTTGGCTGCGATGGCCCACCATA
CTGTTTAGCAAATAGACTCATTGATCGAAACCCAAAGGCATATGATTGGT
TAGCTATGCAACCTGGTCTTGGCCACTTGAATATGAACCAAGGATTTTTT
AAGGTAAAAAGCAC

Coding sequence (CDS) from alignment at scaffold_204:103265..103628

>TCONS_00051772 ID=TCONS_00051772|Name=TCONS_00051772|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_204:103265..103628 (Clytia hemisphaerica)
GAAAATGCGACAAGTGTAGTTCTGAAGTTAAAAGAATCGAAGAAACCAAC
TACATCTGAAGGTGCCAAATATCTCCCTCTTGGTGAAACACAAAACATCA
ACACGTGTCCTATGAAGGTTGGTGAACCAATATTGTTCAATCCAAACAGC
TATGAAAACTTGGAACTTATTTTAAAGCAGCTGAAGGAGAACCTTGCCAT
TAGGAGAGGAAGAGAATGGACATTTGTTGGCTGCGATGGCCCACCATACT
GTTTAGCAAATAGACTCATTGATCGAAACCCAAAGGCATATGATTGGTTA
GCTATGCAACCTGGTCTTGGCCACTTGAATATGAACCAAGGATTTTTTAA
GGTAAAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032780XLOC_032780Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051772-proteinTCONS_00051772-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051772-exon-scaffold_204-1491911889:103265..103628TCONS_00051772-exon-scaffold_204-1491911889:103265..103628Clytia hemisphaericaexon
TCONS_00051772-exon-scaffold_204-1510915933:103265..103628TCONS_00051772-exon-scaffold_204-1510915933:103265..103628Clytia hemisphaericaexon
TCONS_00051772-exon-scaffold_204-1575043694:103265..103628TCONS_00051772-exon-scaffold_204-1575043694:103265..103628Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_204supercontigscaffold_204:103265..103628 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.457777	0.669607	0.259159	0	3.39536	1.21957	2.64845	2.75494	1.9288	1.9113	2.31895	0.609754	1.82672	2.21324	0.909794	1.2553	2.57739	1.40893	1.21657	0.50922	1.54912	0.971493	0.262439	0.238595	2.94897	1.53527	1.56926	0.669902	0.762146	0.517671
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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