TCONS_00051790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051790
Unique NameTCONS_00051790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length877

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051790 ID=TCONS_00051790|Name=TCONS_00051790|organism=Clytia hemisphaerica|type=transcript|length=877bp
ttgaccatcaaagccttatgttcttatatggtttgttctttATGATAACA
AAACGTGcaacattttaaagatttttaactaAAATTTTGGTTACAGCACC
GAGCAGGTTACAGCGTTttaattacaataaaaataatGACTTATTGGAGA
TCATCAAAGCCTTTAAAGGTTCTCACTGTAATCTTGATGGTTGTGACTTT
ATTATACTACAAGGAGGATCTGCCCAAGCGAAACAAAGCCACAACAGAAT
GAATTCCAACAAGATGAATTCCAACCAATTGAAGTTTACAAGCAAACATG
GAAAGGAGATTGTCCATATCCAAAATATGTTGAAATGGAGAAACTAGAGA
GACAGAAATGGTTTCCACGATATTTGCACCATCTACAGAAAgtcaatttg
aagaaaatttataaatattatTGGAACGATAAGTGTGTCAGATGGTGGCA
CCCGAACCCGAAAAATACCTGGTCCTTTTATCCACATCGTAAAAAAACGT
GGAAGCCCGCCGTCCGACCAGGCCCAAGTTTTATCCGTCCGAATTGTACT
TTCGGACGAGAGCTGAAACCACcgacaaaatgttcaaaaatgcgCCAACG
ATTATGGGACGAGTTGGATAAAATGGGAGCTGTTTATTTCCCTAGAAGTG
GAACAGAGTTGGGTATTTTAAGAGGAAGTTCTTATTTAACTTCAGATGGC
GATATAGACATACATGTAGACGTCCCTCAGGACATATTATTCAAAAGATT
GCGCAAGGTTTTAAAAGGCATTGCAATGGATCCGGGTGGCAGACCTTCGG
CCGAAGTAAGTTGGATACAAAGAGGATGTCCACATAATAAAATGGTTTTT
AACGATAACATGGTTGATGAAATGATG
Run BLAST on NCBI

transcript from alignment at scaffold_205:20381..22263+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051790 ID=TCONS_00051790|Name=TCONS_00051790|organism=Clytia hemisphaerica|type=transcript|length=1883bp|location=Sequence derived from alignment at scaffold_205:20381..22263+ (Clytia hemisphaerica)
ttgaccatcaaagccttatgttcttatatggtttgttctttATGATAACA
AAACGTGcaacattttaaagatttttaactaAAATTTTGGTTACAGCACC
GAGCAGGTTACAGCGTTttaattacaataaaaataatGACTTATTGGAGA
TCATCAAAGCCTTTAAAGGTTCTCACTGTAATCTTGATGGTTGTGACTTT
ATTATACTACAAGGAGGATCTGCCCAAGCGAAACAAAGCCACAACAGAGT
gagtaactttttttctaacctgataacagatggttggaatttttttacgC
GCACGGTATActtctgaaggcgcttgaaaattaactATTTGAGAACAATT
GTCAAATCTATAACAAGAATTTTGTTTCACGCCGAgatgtcaaaaattga
attttctctAATAGGGCGCTTTATATTCCAACACAATCTAGCGGTGACTT
ATTGTATTCTTTCCCAGTCTTTTTTTAGTGTTGCACGATCCTTACGAAAT
CGATGTTATGCATTAGTTTGATTAGTTTTTCGACGGGCTTGACTGActct
aaaatctcaaaaatcaaaatcaaaataaaattgatttcataTTGCTCTGG
TCTTTAGGGCAGAATTGAAGTAGTCTAGACTGTACCCCGATTCTTAATAC
TTTGACCTATTgttcttgaattgttcttataaagaatacTGTATGCGGCA
CTATTTTCATTGATGTTGCAAAACTTTTAGATACATTATATCATAAGCAA
AGTTATTTTGGCCCACCTAAAATTTAAGcactttatttttaataaatttt
aaatgtaGAGTTTATGGGACACATTTTTTCATTAACTTTGCTAAATTTTA
ACACCAGCATacattttaagctgtttttgccCATCAAAATGTTAGTTTAA
AAAAGAATCTCTCGAAGTGTCATGTTTTTGACATAacgttttcatatttt
tataagGGGTCAACCAGATGAATTCCAACAAGATGAATTCCAACCAATTG
AAGTTTACAAGCAAACATGGAAAGGAGATTGTCCATATCCAAAATATGTT
GAAATGGAGAAACTAGAGAGACAGAAATGGTTTCCACGATATTTGCACCA
TCTACAGAAAgtcaatttgaagaaaatttataaatattatTGGAACGATA
AGTGTGTCAGGTAGAAAGTAATGCAGAGTCTCTTAACTCGAATGTCCCCT
TAAGATAAATAAGTTTTTTCCTATCTACATTTAAcgatgccttataaacc
ttactccacaactcaaaatttcctcaactcaaaacaaatttgtgttcccc
gtgcatGTTATGGAGTTATTCAGACTTAAATTTCTAGTCTATGCAATCTA
AATTTTTCAGGAATGCCTTCGTTCTATTGGTATGGTAAATTTTATAAGTT
TCAAAAAGGTGTCTGACAATAATTCATTTCCATTTTTAACATCATAGATG
GTGGCACCCGAACCCGAAAAATACCTGGTCCTTTTATCCACATCGTAAAA
AAACGTGGAAGCCCGCCGTCCGACCAGGCCCAAGTTTTATCCGTCCGAAT
TGTACTTTCGGACGAGAGCTGAAACCACcgacaaaatgttcaaaaatgcg
CCAACGATTATGGGACGAGTTGGATAAAATGGGAGCTGTTTATTTCCCTA
GAAGTGGAACAGAGTTGGGTATTTTAAGAGGAAGTTCTTATTTAACTTCA
GATGGCGATATAGACATACATGTAGACGTCCCTCAGGACATATTATTCAA
AAGATTGCGCAAGGTTTTAAAAGGCATTGCAATGGATCCGGGTGGCAGAC
CTTCGGCCGAAGTAAGTTGGATACAAAGAGGATGTCCACATAATAAAATG
GTTTTTAACGATAACATGGTTGATGAAATGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032798XLOC_032798Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051790-exon-scaffold_205-1491911889:20381..20628TCONS_00051790-exon-scaffold_205-1491911889:20381..20628Clytia hemisphaericaexon
TCONS_00051790-exon-scaffold_205-1510915933:20381..20628TCONS_00051790-exon-scaffold_205-1510915933:20381..20628Clytia hemisphaericaexon
TCONS_00051790-exon-scaffold_205-1575043694:20381..20628TCONS_00051790-exon-scaffold_205-1575043694:20381..20628Clytia hemisphaericaexon
TCONS_00051790-exon-scaffold_205-1491911889:21348..21540TCONS_00051790-exon-scaffold_205-1491911889:21348..21540Clytia hemisphaericaexon
TCONS_00051790-exon-scaffold_205-1510915933:21348..21540TCONS_00051790-exon-scaffold_205-1510915933:21348..21540Clytia hemisphaericaexon
TCONS_00051790-exon-scaffold_205-1575043694:21348..21540TCONS_00051790-exon-scaffold_205-1575043694:21348..21540Clytia hemisphaericaexon
TCONS_00051790-exon-scaffold_205-1491911889:21828..22263TCONS_00051790-exon-scaffold_205-1491911889:21828..22263Clytia hemisphaericaexon
TCONS_00051790-exon-scaffold_205-1510915933:21828..22263TCONS_00051790-exon-scaffold_205-1510915933:21828..22263Clytia hemisphaericaexon
TCONS_00051790-exon-scaffold_205-1575043694:21828..22263TCONS_00051790-exon-scaffold_205-1575043694:21828..22263Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:20381..22263 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.827694	0.450234	0.105338	0	6.84613e-09	0	0	0	0	3.25447e-08	0.619285	0.369459	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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