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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051802 ID=TCONS_00051802|Name=TCONS_00051802|organism=Clytia hemisphaerica|type=transcript|length=3605bpRun BLAST on NCBI protein sequence of TCONS_00051802-protein >TCONS_00051802-protein ID=TCONS_00051802-protein|Name=TCONS_00051802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=933bp MTDHQETIPWVLAAIAKVKGQKQQPNEDRISTVLLQSYGLEKDXKGQKQQRun BLAST on NCBI transcript from alignment at scaffold_205:181068..192238+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051802 ID=TCONS_00051802|Name=TCONS_00051802|organism=Clytia hemisphaerica|type=transcript|length=11171bp|location=Sequence derived from alignment at scaffold_205:181068..192238+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_205:181068..192238+ >TCONS_00051802 ID=TCONS_00051802|Name=TCONS_00051802|organism=Clytia hemisphaerica|type=CDS|length=47634bp|location=Sequence derived from alignment at scaffold_205:181068..192238+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051802 vs. Swiss-Prot (Human)
Match: KAT6A (Histone acetyltransferase KAT6A OS=Homo sapiens GN=KAT6A PE=1 SV=2) HSP 1 Score: 441.039 bits (1133), Expect = 5.116e-130 Identity = 206/311 (66.24%), Postives = 249/311 (80.06%), Query Frame = 2
Query: 1385 VTEKDEQMFKNAREKANSYLTSNNEPADPNNVRCPPKIEFGRYEIETWYSSPYPQEYASAPKLYLCEFCLKYMKTRTILKRHLMKCNWTHPPANEIYRKDSLSVFEVDGAVSKIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTRNDNTGSHLIGYFSKEKACQQKNNVSCIMTMPQYQRQGYGRFLIDFSYLLSRKEGQAGSPEKPLSDLGLITYRNYWKNVIAEYLYEHMNDKAVTIKAISQATGMDPHDIASTLQSLEVVQVRNGKVTIVINERVIADHMAKLKQQKR-VPIDEEALRWTPLVQSGN 2314
+TEKD ++F++ +E+A + P DP VRCP IEFG+YEI TWYSSPYPQEY+ PKLYLCEFCLKYMK+RTIL++H+ KC W HPPANEIYRK+++SVFEVDG VS IYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLT+ND G HL+GYFSKEK CQQK NVSCIM +PQYQR+GYGRFLIDFSYLLS++EGQAGSPEKPLSDLG ++Y YWK+VI E LY H NDK ++IK +S+ TG+ P DI STL L ++ R+ + I+ E++I DHMAKL+ R V +D E LRWTP++ S +
Sbjct: 477 MTEKDMELFRDIQEQALQKVGVTG-PPDPQ-VRCPSVIEFGKYEIHTWYSSPYPQEYSRLPKLYLCEFCLKYMKSRTILQQHMKKCGWFHPPANEIYRKNNISVFEVDGNVSTIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVLTQNDVKGCHLVGYFSKEKHCQQKYNVSCIMILPQYQRKGYGRFLIDFSYLLSKREGQAGSPEKPLSDLGRLSYMAYWKSVILECLY-HQNDKQISIKKLSKLTGICPQDITSTLHHLRMLDFRSDQFVIIRREKLIQDHMAKLQLNLRPVDVDPECLRWTPVIVSNS 784 HSP 2 Score: 193.741 bits (491), Expect = 9.636e-50 Identity = 114/326 (34.97%), Postives = 171/326 (52.45%), Query Frame = 2
Query: 140 RISTVLLQSYGLE--KDXKGQKQQPNEDRISTVLLQSYGLEKDEALHHLQLCVDEGLVTVAMAKNGKNSYRNAKATPGIKGP-PINH--------VQLKKTLDEILANPIRDQGMTIEEIEHSLRTKK---SLEGDLENADFVNQFRAALKYGMAKNRYLKEGKYYVINKFPPRHPRKKKEPQENGXXXXXXXXXXXXXXXXXXXXXKAMLKEI--CGFCKGGPEKNKYGEDEDLLSCMDCGNSGHPTCMQYSKELTVRVRLEPWQCMECKKCTVCKDIGEAA-NLLFCDACDKGYHMECLSPPLDDMPIGSWICDNCVAERNGKR 1066
+++ L + LE K K QKQ+P+E+RI + S+GL++ L L+L V +G + + ++ G NSY++ I P P NH V K + + G T++ IE L+ +K +L G + F Q R A+K + R LK+G Y +N K +G ++K + + I C FC G E+N+ + E+L+SC DCGNSGHP+C+++S ELTVRV+ WQC+ECK C+ C+D G+ A N+LFCD+CD+G+HMEC PPL MP G WIC C + G++
Sbjct: 3 KLANPLYTEWILEAIKKVKKQKQRPSEERICNAVSSSHGLDRKTVLEQLELSVKDGTI-LKVSNKGLNSYKDPDNPGRIALPKPRNHGKLDNKQNVDWNKLIKRAVEGLAESGGSTLKSIERFLKGQKDVSALFGGSAASGFHQQLRLAIKRAIGHGRLLKDGPLYRLNT---------KATNVDGKESCESLSCLPPVSLLPHEKDKPVAEPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRPRKKGRK 318 The following BLAST results are available for this feature:
BLAST of TCONS_00051802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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