TCONS_00051840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051840
Unique NameTCONS_00051840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051840 ID=TCONS_00051840|Name=TCONS_00051840|organism=Clytia hemisphaerica|type=transcript|length=1490bp
AAACAGGGATATGATATGAGGGGCTAGCTGACcattgtttgaaaaatatt
ttctcggTTATAGCAGACCaaactgaaaagaaaagaaaagggaAATATTG
TGAGAATTCTTAGCCTGAAGAGTAAGTACACTGTGGGTGAGTAAGGGGAA
AAAACGAAAACAGAGGGAAAgtaaaaaatttccttttgtacatttttata
ttttgttaaaGTTTGATGTGTTTTCATATGGCCACCTGATGCAATCGAAT
TTCATCCTACCAACTATCGAATCTATCTAtagtaataaatataataacAG
TCAATCGTCTTCGTTGAACACCAAAAGTAAATTCTTTCAATCAAACATGG
CGTCAGGAAGTAACGGTGGCAGTTCGAATGAGTTATCAAACGTACCGCAA
GTGATTGAACTCAATGTTGGTGGACACTACTACACAACAACCCTCTCCAC
ACTTTTATTTGAATCTGGCTCTCTTTTGACAAGTATGTTTACTGGCAACA
TCCGAGTATCTAAAGACAGTCGTGGTAGATATTTTATTGATCGCGACGGT
GCTTTGTTTCGGTACGTATTGGATTATCTTCGCAACGACGGACTGACGTT
ACCTAAAAAGTTCGAAGAGGCGGATCGGTTGTTAGTAGAAGCTGAGTATT
TCAGATTGAAAGGACTCTGTAAATTGTTGAAAAAGCCTACACGTAAAGAC
CCGAGAGGACCTACATCTCGTACGAGTGGTTTTATCACGCTTTGCGTTCG
TGGTACGTATGCTTTCGGCCGTGACGGGATCGCTGATATTAAGTTTCGCA
AACTTCAACGTATCTNTTGCGTTCGTGGTACGTATGCTTTCGGCCGTGAC
GGGATCGCTGATATTAAGTTCCGCAAACTTCAACGTATCTTAGTTTGTGG
AAATGTCGGATTAAGTCGTGAAGTGTTTTCAGACACACTAAACGAAACAC
GTGATCCCGATCGGAAAACAGATTGTTATTCAAGTCGTTTCTATCTTAAG
CATCCTCACTTGGAAATGGCCTTCGATAGACTCCAtgaatcaaattttaa
aatggtCACGTCAGCTGCAGGAGGGGCTGGTTATGACCCAGAATCCGAAG
AAACCAAATGGAACCATTTCACTAATTATGTTTTCTTCAGAGAATAATTG
AACACGAAATACTTTTAAGACCCACAAAGGCTCTCAATAACCGAATCGCT
ATTTGAGTAGTACTTTTTGTAAGATGAAGTCTATTGTGTTGGATTTTACC
AGCAGTTGAATTCTACATCTTAGGCAAACTATGCCTGTTACAGTGACTTT
TGTTTAAGAGAAGACATtgttccttttttgaaaaagtagaTAGCGTACAT
TGAAACCCTTCTCCTTAACTTAATGATATACAAAAAGGAAATGTTTTTAT
CAGTTTCgaccaaaatttgttttattgtttagaaatattttgggcTTAAT
ACTTGTAATGGTTGTTTCATTACTAacttatttttagaaa
Run BLAST on NCBI

transcript from alignment at scaffold_205:45438..46927-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051840 ID=TCONS_00051840|Name=TCONS_00051840|organism=Clytia hemisphaerica|type=transcript|length=1490bp|location=Sequence derived from alignment at scaffold_205:45438..46927- (Clytia hemisphaerica)
AAACAGGGATATGATATGAGGGGCTAGCTGACCATTGTTTGAAAAATATT
TTCTCGGTTATAGCAGACCAAACTGAAAAGAAAAGAAAAGGGAAATATTG
TGAGAATTCTTAGCCTGAAGAGTAAGTACACTGTGGGTGAGTAAGGGGAA
AAAACGAAAACAGAGGGAAAGTAAAAAATTTCCTTTTGTACATTTTTATA
TTTTGTTAAAGTTTGATGTGTTTTCATATGGCCACCTGATGCAATCGAAT
TTCATCCTACCAACTATCGAATCTATCTATAGTAATAAATATAATAACAG
TCAATCGTCTTCGTTGAACACCAAAAGTAAATTCTTTCAATCAAACATGG
CGTCAGGAAGTAACGGTGGCAGTTCGAATGAGTTATCAAACGTACCGCAA
GTGATTGAACTCAATGTTGGTGGACACTACTACACAACAACCCTCTCCAC
ACTTTTATTTGAATCTGGCTCTCTTTTGACAAGTATGTTTACTGGCAACA
TCCGAGTATCTAAAGACAGTCGTGGTAGATATTTTATTGATCGCGACGGT
GCTTTGTTTCGGTACGTATTGGATTATCTTCGCAACGACGGACTGACGTT
ACCTAAAAAGTTCGAAGAGGCGGATCGGTTGTTAGTAGAAGCTGAGTATT
TCAGATTGAAAGGACTCTGTAAATTGTTGAAAAAGCCTACACGTAAAGAC
CCGAGAGGACCTACATCTCGTACGAGTGGTTTTATCACGCTTTGCGTTCG
TGGTACGTATGCTTTCGGCCGTGACGGGATCGCTGATATTAAGTTTCGCA
AACTTCAACGTATCTNTTGCGTTCGTGGTACGTATGCTTTCGGCCGTGAC
GGGATCGCTGATATTAAGTTCCGCAAACTTCAACGTATCTTAGTTTGTGG
AAATGTCGGATTAAGTCGTGAAGTGTTTTCAGACACACTAAACGAAACAC
GTGATCCCGATCGGAAAACAGATTGTTATTCAAGTCGTTTCTATCTTAAG
CATCCTCACTTGGAAATGGCCTTCGATAGACTCCATGAATCAAATTTTAA
AATGGTCACGTCAGCTGCAGGAGGGGCTGGTTATGACCCAGAATCCGAAG
AAACCAAATGGAACCATTTCACTAATTATGTTTTCTTCAGAGAATAATTG
AACACGAAATACTTTTAAGACCCACAAAGGCTCTCAATAACCGAATCGCT
ATTTGAGTAGTACTTTTTGTAAGATGAAGTCTATTGTGTTGGATTTTACC
AGCAGTTGAATTCTACATCTTAGGCAAACTATGCCTGTTACAGTGACTTT
TGTTTAAGAGAAGACATTGTTCCTTTTTTGAAAAAGTAGATAGCGTACAT
TGAAACCCTTCTCCTTAACTTAATGATATACAAAAAGGAAATGTTTTTAT
CAGTTTCGACCAAAATTTGTTTTATTGTTTAGAAATATTTTGGGCTTAAT
ACTTGTAATGGTTGTTTCATTACTAACTTATTTTTAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032813XLOC_032813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051840-exon-scaffold_205-1575043694:45438..46927TCONS_00051840-exon-scaffold_205-1575043694:45438..46927Clytia hemisphaericaexon
TCONS_00051840-exon-scaffold_205-1510915933:45438..46927TCONS_00051840-exon-scaffold_205-1510915933:45438..46927Clytia hemisphaericaexon
TCONS_00051840-exon-scaffold_205-1491911889:45438..46927TCONS_00051840-exon-scaffold_205-1491911889:45438..46927Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:45438..46927 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.988461	1.14251	0.871663	0.368148	1.72349	1.51478	26.9181	27.3809	17.8844	13.5772	8.77882	12.443	5.35586	5.45166	3.1812	3.47095	5.5912	5.93154	10.1769	12.4562	7.04303	7.33213	3.71465	5.6004	6.68027	6.60953	3.43335	3.77414	0.960282	0.923082
Blast
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BLAST of TCONS_00051840 vs. Swiss-Prot (Human)
Match: KCTD8 (BTB/POZ domain-containing protein KCTD8 OS=Homo sapiens GN=KCTD8 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.128e-54
Identity = 119/279 (42.65%), Postives = 156/279 (55.91%), Query Frame = 2 
Query:  395 PQVIELNVGGHYYTTTLSTLLFESGSLLTSMFT-----GNIR----VSKDSRGRYFIDRDGALFRYVLDYLRNDGLTLPKKFEEADRLLVEAEYFRLKGLCK-LLKKPTRKDPRGPTSRTSGFITLCVRGTYAFGRDGIADIKFRKLQRIXCV------------------RGTYAFGRDGIADIKFRKLQRILVCGNVGLSREVFSDTLNETRDPDRKTDCYSSRFYLKHPHLEMAFDRLHESNFKMVT-SAAGGAGYDPESEETK-WNHFTNYVFFR 1141
            P+V+ELNVGG  Y T  STLL    S L SMF+     G  R    + +DSR R+FIDRDG LFRYVLDYLR+  L LP+ F E +RLL EAEYF+L  L K L  K T+++        S       +G+        A                               RG+Y   RD  AD KFR++ RI+VCG + L++EVF DTLNE+RDPDR+ + Y+SRFYLK  +LE AFDRL E+ F MV  +++G A +  +  + K W+ +T Y+FFR
Sbjct:   43 PEVVELNVGGQVYVTKHSTLLSVPDSTLASMFSPSSPRGGARRRGELPRDSRARFFIDRDGFLFRYVLDYLRDKQLALPEHFPEKERLLREAEYFQLTDLVKLLSPKVTKQNSLNDEGCQSDLEDNVSQGSSDALLLRGAAAAVPSGPGAHGGGGGGGAQDKRSGFLTLGYRGSYTTVRDNQADAKFRRVARIMVCGRIALAKEVFGDTLNESRDPDRQPEKYTSRFYLKFTYLEQAFDRLSEAGFHMVACNSSGTAAFVNQYRDDKIWSSYTEYIFFR 321
The following BLAST results are available for this feature:
BLAST of TCONS_00051840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCTD83.128e-5442.65BTB/POZ domain-containing protein KCTD8 OS=Homo sa... [more]
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