TCONS_00051845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051845
Unique NameTCONS_00051845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1774

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051845 ID=TCONS_00051845|Name=TCONS_00051845|organism=Clytia hemisphaerica|type=transcript|length=1774bp
AGAGAAGGAACTTTTATTCATTTCTGCtagttttttttctattttactgg
tatttttttgttgaaacaaATTAAATtttttaaaagaaattgactGCAGC
AGATTGGAAATAAAATGAAGACTTTATTTTTCATCCTTCTACTTTGTCTG
GTTCTTCTTTACCAAGCTGATGGAAAACCCAAATCAAGAAGCAGAAGCAA
AGCAACAATCAGAAACAACAAATCATCCTCCAGAAAATCATCCAGTGTCA
GCAAGGCTAAAACACGAATGAAATTTCTCGAAGcacgaaacaaaaaatca
aaagatcgATTCAAGTCACGTAAACGTTCATACCAGATTGACCGATTCAT
CCGGACTTATGCCATTTTACGAATAAGCACCATTGGGATGAGATTTCAAA
TGCAGCGTCGAGGACAAGTTCTGGCGATGAGAGTCAAGAAAATTGAAGAG
AGAAAATCCAACAACGAGACGATTGAGGTTGAAGACTCGTTAGATGATAT
ATCATGCAGCATGACAAAAGACCAAGAAAGCGATACTACTTATAGTATCG
AAGCCACACTGATGGAAACAAAATGCCAGTTGAAAAATAAAGCTGATGTC
ACACTACAAATGTACATGTTTAAAGAAGCAGGAAATTTGACGGGTGCTGA
TGGCAATACATACCAAGTTGTTGAAGGCGCTACTAAAGTTAATGTACTGG
TTAATAATTGGCCAAACTCAACAGAGTCATCAACGAAAGCGAATTCGACA
GAGTTTGTTGATATCGTGGTTGCGATTAAATGCGGTTTTGAAGATGAAGC
AAAGGGAAGGAAACCGTTACGATCTAAACTTCAACGTGGAAGAATCGAAA
ACAACTCCATTCGTAGAAGATCTCCAGAAACTTTTGATGTTTGTCCTAAC
GCACGATCAACGTTTGCCCCAAATTACTTATCTGACGGAAACCAGGTCGA
AATGCCAGAAGGATTTCCCAAGGCTGAATCTGACCTTAACGAAGACAAAG
AAGCCGAATTTACTTTACGATTCAAGAAAGGAGGAAATATAATTTATGAT
CCAATCGTTGAAGCAGGCGATGATATTGGAGATTACATCCCAAGCGCTGG
CAAATCCATTCATATGTTTTCATGTTTGTTGATGGTCATTTGTTCAGCTT
TGGTCTTGCCATTCATGTATTAGAGAGGCTCAAATAAGAAGAGAAATCCT
CTCACACTTGTCAACTGCCAAATCAAAGTTTGTGGATATTTGGCGAGTGT
GTGACCTTATTGGTTAACTTTGGTTCCCACGGGTTTAGAATAAACGAATC
TTCGCTAGCTCTCGATGTTTGTCCAACCAACCTGATTTAATTTGggttgt
ttcttaatttttgggaatatttcTAGTGTTGTCCAaacaattttgataat
tttccaaAACACAACAAAttagaaatgaaaaatttgtatACCACGTTTAT
TTCAATTTAATAGGTAACCTGAGAGTTATCTTGCACTCGTGGCCTTATCT
TTCTCCGAACCTCTCAAACTAATTATGATAAAGAAAGAATATTCATTTGA
GAGTCGCACAACAACTCTTTGTTGGTTGAGTGTGAATATTTGAAGCaaat
tttgtaattattatatttttacGATATATTCGAGTTctgtaaattttctt
tcttttgatttttttatattttgtctaATTAATTTGCACAGCTTTTATAC
GAATAATTAATCGAGAAATGAATACTTTTGTTGATCTATATACTAATAGC
GGCATtctgtatgtcgttttgtct
Run BLAST on NCBI

transcript from alignment at scaffold_205:74346..79559-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051845 ID=TCONS_00051845|Name=TCONS_00051845|organism=Clytia hemisphaerica|type=transcript|length=5214bp|location=Sequence derived from alignment at scaffold_205:74346..79559- (Clytia hemisphaerica)
AGAGAAGGAACTTTTATTCATTTCTGCTAGTTTTTTTTCTATTTTACTGG
TATTTTTTTGTTGAAACAAATTAAATGTAGGTAGTACAGATATAATTCTA
GCAATTTTATTGGAAGAGTTTGTCTGATGTCTAGTGTCTATAAGATTTCT
TGAGACCTGCTTACTTAGGACTGTATATAGTTCACATATTTATTTGTCAA
ATATGTTCTAACCATTCATGACATTTATATTACACATCCATTGCGGCTAT
TGAAAAAAATGTGGAGATGGTGGTGAGCTATGAATTATTTAATCAGTTGT
TATTCATGGTTCGATTTGCGGTAACTTTTGTACCACACAGGAGTCACCGA
CCATCTGAATATTTCATCAAAACACGTCAAGTTCTCAATTGACGTCACAC
TGTGGTGCATGCATCAAACTTTTATTTTGCATTCTTGGTATTATGTTCCA
AAAAAGTCACATGTATTGAAAAATAAAGAGATACAAAAACAAGCTTATAC
CAAAAATAACTGTATAATCTTTTGGTATTTTTCTTTTATTTTCAGTTTTT
AAAAGAAATTGACTGCAGCAGATTGGAAATAAAATGAAGACTTTATTTTT
CATCCTTCTACTTTGTCTGGTTCTTCTTTACCAAGCTGATGGAAAACCCA
AATCAAGAAGCAGAAGCAAAGCAACAATCAGAAACAACAAATCATCCTCC
AGAAAATCATCCAGTGTCAGCAAGGCTAAAACACGAATGAAATTTCTCGA
AGCACGAAACAAAAAATCAAAAGATCGATTCAAGTCACGTAAACGTTCAT
ACCAGATTGACCGATTCATCCGGACTTATGCCATTTTACGAATAAGCACC
ATTGGGATGAGATTTCAAATGCAGCGTCGAGGACAAGTTCTGGCGATGAG
AGTCAAGAAAATTGAAGAGAGAAAATCCAACAACGAGACGATTGAGGTAA
AAGAACACAGTACTTATTCTATGATTTATTTTTACATATCTCAGCCAGGG
ACAATTTTGTTAAATTTTAAATTCTTTCAGTACTTTTGGCAAAAGTTCTT
TTTCCCGGAATTTACCAAAATTTCCATCATACTTTTCATTTGTTGTCTTT
TTCGGGTATTACGGTTACCTTGACAATGTACGTAATGTTGGTGTACACTC
TTAATTTTACTTGTCTGTTCCCCGTTTTTTTGGACCTGCCCCGGTGGGGT
GGAGGTCCTATAAATTAACCTTTGTCCGTTCCAGTAGCGGCCTGGCTTAA
TTTTCTTGGTGGTGCAAACTATGAAATTGGCGCCCCTGGTATTTTTGTCC
TTATTTGCACCCTCCATCATTAAAAGGGGAAATATTAAACTGTAAGAGCA
GTGACTGGTTGAAAGTAACGCCCGGAATCTCAGAGTTAACAAACTTTTAT
TTATACGAAGGTGGTGGTAATGATACTTTGATATCTATTTTCTTGTTATT
TCCTGGTCTTACTTTACTCTCCATTAAAGATCAATGGCTGAAAGAAGCCC
CAAAAATTCGAAAGTTGGCAGGAATAAGGGTTCGTTGTAATTCTGGCGCC
GCAGGCAAAAAAATTTGGTGTAAGAAAGGTCAAACAGCTTAAAAGATATT
CTAAAAAGGAGAAAGTTAGTCCGCATAAGACCACAAAAACCACAGCGAGC
AGTTTCAATGAATCTCTCATTTTGGAGGTAAGCATCCTCTAAAATAATTT
ACATTGCACTTATAGAAGGCGCTAAAAACGTGTCAAAGGGCGCCAAATCG
CCCAACCAAACATCAGGATCAAAACAATTTTGGCGCCGCCTTGAAAAGCT
TTTTTGGCGCCCCTCTCAGGTCTTTCTGGGTGGTGCACTGCACACCCTGC
ACCCCCTGCCAGGCCGCCTCCGTTCGTCCGTTCGTTCGTTATTAGCTTTC
CTCGTGATTGGCTCATTAGTTTTTTCTGATTTTTTGCACAAAGATGTGTA
ACTATAAACCCTCAAACGTTACGGAGCGAATTTTTTACATGAAAGTAGGG
TACCATCATAGGTAATAGATGGCTCAAGCAGATTTTTTCAAAAAAATTTT
ATTGGCTCAAAAAACGCATGTTTATCTATAAGAATCACTATTAATAAGCA
TACGTCAATGTTCTTAGTTAAATTACTCAATTTTTTTATGAGATAGATGT
TTTTTTTGCTCTTGAGGGCTGTGTGTGTTTAGACATGAGATTTCGGTTGC
TTGGCGTGTTTTTATAGAAAAACTGGCCAAATTCGATATTTATTTATAAA
GACATTATCAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCGCTTTGA
TTCTTTATGATTTTTTGCACAAAGATGCACAACTATAAACCCTTGAATGT
GACGGAGCTCGATTTTCGAAAAAAAATGTTTTGGGGCAAATTTGGGCCAA
AAAACGGCTAAAAACGGGTTTTTTGGACTTTGTGAAAAATTGGATCATTA
ATTTTTTTCTGATTTTTTGCATGAAAGATGGCTAAGCAGATTTTTGCAAA
CAATTTTTGCTGACTCAAAAAACGCATGTTTATCTATAAGAATCATTATT
AATAAGCATACATTAATGTTCTTAGCCAAATTACTCAATTTTTTGATGAG
ATAGATGTTTTTTTGCTCACGAAGTCTTGAATATGAAAAAATGTTTCAAG
AGCATAAAATTTTGGTTTCTAAACGTTTTTTTTATAAGAAACAAACGACT
AGTTTTAATAGATCGTCACTATTTGTGTTTTGAATGATTGCTTAATGGTC
ACGCTCACGTAGATATCAATTATATATGTGTTAAATGCATAACCAGGTAG
GTCCATAAAATTATCACTTGTTGGAACTGAAAATCATTTCAAGGAACAGA
GAGTCTGAGCTCTGAAAAGAGCCATAAGAATATATAAGGACTTTTTGTAA
ATAAACCATGTTCCGTAAAATATTCTGTACGTCAAAAACATTTATCTTCT
CCATGACCAGGTTGAAGACTCGTTAGATGATATATCATGCAGCATGACAA
AAGACCAAGAAAGCGATACTACTTATAGTATCGAAGCCACACTGATGGAA
ACAAAATGCCAGTTGAAAAATAAAGCTGATGTCACACTACAAATGTACAT
GTTTAAAGAAGCAGGAAATTTGACGGGTGCTGATGGCAATACATACCAAG
TTGTTGAAGGCGCTACTAAAGTTAATGTACTGGTGTAAGTGATTGTTCCC
TTTTTGGTGAACCACTTTTATAAGTTCATGCGATATAATTTACATCTCAA
AGTAAAACATTTCCCAGTGACTATTGGAATTGGTGTTCCATCTGCATCCC
ACTGGAATTCCAATTAGTTATTAGTGGTTCATTCTTAAAATAGTTGTTAC
ATTTTATCTTAAGAATTCAGTGGAGTTGAAAAAGAACTGCGATTTTTCAA
AAAATTCTTCACTGAGAATACTATTAGAGGCTTCTACAGGCTCATGCCGT
CAACGGTATATATTCTGTCGTGGCGTGGTACATGCAATAGATTTCAGATT
TGGATTAGATTTCCGTTGACATCTGGTTTTGCCCCGACAATATTCCTGGT
CGACCTAGTACTTCTATGTTTCAAAAACACATTACTATAATAGTAAGTTC
AACTATCTTTCGCTAAAAATTTATGAGTCCTTTCAATTTCTTTCAGTAAT
AATTGGCCAAACTCAACAGAGTCATCAACGAAAGCGAATTCGACAGAGTT
TGTTGATATCGTGGTTGCGATTAAATGCGGTTTTGAAGATGAAGCAAAGG
GAAGGAAACCGTTACGATCTAAACTTCAACGTGGAAGAATCGAAAACAAC
TCCATTCGTAGAAGATCTCCAGAAACTTTTGATGTTTGTCCTAACGCACG
ATCAACGTTTGCCCCAAATGTAAGTTTTCGTTTTTGATGATAGGAAAGTA
ATGTCAATTTTGAAATTGAACGTAGTTAAGTGTAGTTTGATTTGTAGTTG
ATTGAAATCCGGGGGGGGCTCATATGCACTGTAAGGTTGTACTTTTGATA
GAATGCACTACAACTGTCTTTTAGCTAGATAGACTTTAAAAATTTGATGT
ATTTTTATAGTTTTGACTTGAACCCATTTTGATTTGTTTTGTATATTGTG
TCGGCAACTCAGACTCATTTTCAGGTGGCATCTGCAAAATAAGATACGAA
ACCAAACAACACTGTAAGGGGGAGAAACGTTCGGTAAAATGCACTGTTAG
AGTACCTTTTCACACTGCTCAAAGGGCTGCACTGTGAAGGGCCCGATTTC
GGCACATGCTGTCGTTTAGAAATCGAGTGTCCCCCCCCCGGATTGACACT
TTCTTTTAAGACATGTCTCTTACTAATGCTGCAGGAAGCCTAATCTTTTC
TTTACCTTTCACAGTACTTATCTGACGGAAACCAGGTCGAAATGCCAGAA
GGATTTCCCAAGGCTGAATCTGACCTTAACGAAGACAAAGAAGCCGAATT
TACTTTACGATTCAAGAAAGGAGGAAATATAATTTATGATCCAATCGTTG
AAGCAGGCGATGATATTGGAGATTACATCCCAAGCGCTGGCAAATCCATT
CATATGTTTTCATGTTTGTTGATGGTCATTTGTTCAGCTTTGGTCTTGCC
ATTCATGTATTAGAGAGGCTCAAATAAGAAGAGAAATCCTCTCACACTTG
TCAACTGCCAAATCAAAGTTTGTGGATATTTGGCGAGTGTGTGACCTTAT
TGGTTAACTTTGGTTCCCACGGGTTTAGAATAAACGAATCTTCGCTAGCT
CTCGATGTTTGTCCAACCAACCTGATTTAATTTGGGTTGTTTCTTAATTT
TTGGGAATATTTCTAGTGTTGTCCAAACAATTTTGATAATTTTCCAAAAC
ACAACAAATTAGAAATGAAAAATTTGTATACCACGTTTATTTCAATTTAA
TAGGTAACCTGAGAGTTATCTTGCACTCGTGGCCTTATCTTTCTCCGAAC
CTCTCAAACTAATTATGATAAAGAAAGAATATTCATTTGAGAGTCGCACA
ACAACTCTTTGTTGGTTGAGTGTGAATATTTGAAGCAAATTTTGTAATTA
TTATATTTTTACGATATATTCGAGTTCTGTAAATTTTCTTTCTTTTGATT
TTTTTATATTTTGTCTAATTAATTTGCACAGCTTTTATACGAATAATTAA
TCGAGAAATGAATACTTTTGTTGATCTATATACTAATAGCGGCATTCTGT
ATGTCGTTTTGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032816XLOC_032816Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051845-exon-scaffold_205-1575043694:79484..79559TCONS_00051845-exon-scaffold_205-1575043694:79484..79559Clytia hemisphaericaexon
TCONS_00051845-exon-scaffold_205-1575043694:78614..79014TCONS_00051845-exon-scaffold_205-1575043694:78614..79014Clytia hemisphaericaexon
TCONS_00051845-exon-scaffold_205-1575043694:76376..76599TCONS_00051845-exon-scaffold_205-1575043694:76376..76599Clytia hemisphaericaexon
TCONS_00051845-exon-scaffold_205-1575043694:75691..75913TCONS_00051845-exon-scaffold_205-1575043694:75691..75913Clytia hemisphaericaexon
TCONS_00051845-exon-scaffold_205-1575043694:74346..75195TCONS_00051845-exon-scaffold_205-1575043694:74346..75195Clytia hemisphaericaexon
TCONS_00051845-exon-scaffold_205-1510915933:79484..79559TCONS_00051845-exon-scaffold_205-1510915933:79484..79559Clytia hemisphaericaexon
TCONS_00051845-exon-scaffold_205-1510915933:78614..79014TCONS_00051845-exon-scaffold_205-1510915933:78614..79014Clytia hemisphaericaexon
TCONS_00051845-exon-scaffold_205-1510915933:76376..76599TCONS_00051845-exon-scaffold_205-1510915933:76376..76599Clytia hemisphaericaexon
TCONS_00051845-exon-scaffold_205-1510915933:75691..75913TCONS_00051845-exon-scaffold_205-1510915933:75691..75913Clytia hemisphaericaexon
TCONS_00051845-exon-scaffold_205-1510915933:74346..75195TCONS_00051845-exon-scaffold_205-1510915933:74346..75195Clytia hemisphaericaexon
TCONS_00051845-exon-scaffold_205-1491911889:79484..79559TCONS_00051845-exon-scaffold_205-1491911889:79484..79559Clytia hemisphaericaexon
TCONS_00051845-exon-scaffold_205-1491911889:78614..79014TCONS_00051845-exon-scaffold_205-1491911889:78614..79014Clytia hemisphaericaexon
TCONS_00051845-exon-scaffold_205-1491911889:76376..76599TCONS_00051845-exon-scaffold_205-1491911889:76376..76599Clytia hemisphaericaexon
TCONS_00051845-exon-scaffold_205-1491911889:75691..75913TCONS_00051845-exon-scaffold_205-1491911889:75691..75913Clytia hemisphaericaexon
TCONS_00051845-exon-scaffold_205-1491911889:74346..75195TCONS_00051845-exon-scaffold_205-1491911889:74346..75195Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:74346..79559 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.9249	16.2555	20.5753	11.2225	11.6407	10.6025	20.9378	13.8002	31.2766	14.5391	25.881	22.7563	38.0698	33.7926	16.2181	9.72333	37.8906	65.7917	44.495	63.3766	38.4528	38.5128	25.1882	16.422	58.8509	50.1913	5.56185	21.3676	0.0125574	5.92392
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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