TCONS_00051848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051848
Unique NameTCONS_00051848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2149

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051848 ID=TCONS_00051848|Name=TCONS_00051848|organism=Clytia hemisphaerica|type=transcript|length=2149bp
CTTGTGCACTGGAATATGACGTCATAACATCGAATTTTGCAACAAATTTT
TGTCGTCCTTGGATTTTCAACTTTGTCATTGTGCATTATGGAGTATGCGC
ATCTGATTGCGATACTTCTAGTGTTCTCATGTTCATTGATTCATACAGAA
GATGCAGATTCTGACATCTCAAGTTCAACAGTCAGTGTACTACCCTCACA
GAACTCAACAAATTCGACCACTTTCTCAACGACATTCACAGCTTCAGAAT
CATCAGAAGTTGATAATTCTGTGACATTCTCATCAACCAActttgttata
tcctccacttATACCGATCATATTTCTCCGTCGAGTTCTGACCTTCAAAC
ATCATTAACAAGTACACCAAGGTACCAAGTAACCAATACAAGTTCCTTAC
TATCATCAACAAAACAGATAGAACCCTCCACGACACTCTCCTCCGAAGTT
TCTTTGACAGTAAACGTAAAAGCCTCAGTAAGCTCTTTCATAAAACAAGT
TGAGCAATCGTCGCATTTCTCTGGCTCGACCTCAGGAATCTTTGAATCAT
CGACTTTATCTACAGACTTAATACCAACTTCAACAGAAACCTTGTCAGCA
AGCCCAACTTTTTCTACTTCCAATAAATTGACCACGACTAATTCTCAAGT
AGAAACCACCGCGACTAATTCTCAGGTAGAAACTTCCACGACTGCTTTCC
AAGCATCTACAACACTATTAAATACGTCACGCAACACACAGCCCTCTTCC
ACGACACGACCACCTGGAGCCTCATCAATAGACCTGAATATCGCTGCATC
TAGCTTTTATCTTACGGATAGCAGCTTGAAAACATCATCAGATATCATAC
ACGTCAGCACTCAAGAATACTTCTCAACTTCGTCTGCTTTGGCGACAAAA
AGTTCAGTGAGCACCTCCTCATCTTTCTTAAACACATCTGATATCTCATC
AAAGCCGTCGAAAACCAGCTCAAGTTCGCTTCAATCAACTACAGAGGTCC
TACTTTCTTCATCTTATTCCAAAGATGTTGAATTTACATCTATTCAACCA
ACTCCTGGACATTCGCCCGTTCCCGTCAGTAGTATTAGTGTCACTACCCA
AACATATAGTATCACTGTACAAGCAACTTATAATGGGAATTGCACTGCAT
TAAAATCAAATGACAGTTTTGAAAATAAGTTTTTCAATGAAGTTGAATAT
GAactgaaaaacatattttcaccATCGAACGTATTAGTCCATCGTGATAA
TTATAAATGCGGATCTATAATTTTTAATTACACTGTACAGActcaatcaa
aagaaaaaggttTCATGACGAATTTGGAGAGAGCtgaaaatgtaaacatt
actaTTGGTGATTTCCATTTCACAGCGAAATCATCGAAGATTGTGAAAGG
ATTCCCTACAACAAGCTCTCCTCCCAAGCCTGATCCTGAGAAACTAACCG
TGTTGTATGCTACCGTTTTCAGTGTAGtgggttttgtttttgtgatcaTT
CTTGTCGTCATTTACATCGGTTGCCGTAAGAATGTCATCACGAAACACAA
GCGCGCGTACGAATTAGGCCGCTTCTCAAACACAACTACGACCGCCGGTG
TTGGTATGTACGGCGAAGAGTCTCGAAAGTCGAAAACTCCTTCGGAGAGC
CGTTCAGATAAGGAAGACTCTTTACCAACCACGTGGAATAAACCAAAGGA
AGAAAGTAAGGGAGGAGTGGACACCAAACCTAAAAACAAAGAccaaaatc
aaaatggtttcGATAACAAAGGACTAGAGACAGATGAAGATAAGTGAAGT
AAATTTTACAGTTGTCATGTGTACATACAGTATGTTAGCGGAAAGTACAC
GTAAATTTATTTGATGATGAAATTACAGTGTAAACCTTTTAATTTTGGTA
GCAAATGGACAAGTTGATACATGTGCATAGCTCCTACATCTTACAATATG
AGAGAATCAAAAACAGTACTAATCGTATTTATATATAAACAAAATGTTAT
GTTTAAAGAAGTTTATTGTTTTATTGTGCTTATTTGTAAaagtttcttat
gaaaaataaaaagatgcGTATCTTTGTGGTAATACACTCGTTTTTGGATT
CTGTCAATAAGAGTtaaaatctcttaggaattcctcgagggaattctat
Run BLAST on NCBI

transcript from alignment at scaffold_205:82195..86172-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051848 ID=TCONS_00051848|Name=TCONS_00051848|organism=Clytia hemisphaerica|type=transcript|length=3978bp|location=Sequence derived from alignment at scaffold_205:82195..86172- (Clytia hemisphaerica)
CTTGTGCACTGGAATATGACGTCATAACATCGAGTAAGCTCTTTGTAGTA
AGTGTTGTATCTCCTTATAAATTTCATGTGAGAAAATGAGATCTAGTGTT
TATGGGCGCATTGCATTCTCTTGCTTTGAATGTGATACATCACATCTCAT
CAGCTTTCCATTATCCGATATTAGTGTTGACAAAATTTTTGTTTTTCTTT
CATATAGTTTAAATATGGTCAACTATTTTACTTGTTGTCTACCATTTTAC
TTGTATGTTGTGAGAGAAACATTTACTCAGGTTGATTTACACGTAAATAT
TTCTCTCTAAAAATTTTCGCCCTTTTTCTTTTCATTTACTGACCAGCTTT
TACTTTTTTACAGTTTTTCATCTTACTTTTCTAGCAACAGATTTTGCAAC
AAATTTTTGTCGTCCTTGGATTTTCAACTTTGTCATTGTGCATTATGGAG
TATGCGCATCTGATTGCGATACTTCTAGGTATGTGTACTCTAGTTTTGTT
TACTTAAAGTCTAGCTGGTATGCGACGGTCACTTATTTTCGTAGAAATAA
AACCTCGCTAAGCTATTGTTACGCCCTTCTTACCATCATGATATCAGAGT
GAATTCTTATTATAACCACTTTGTACAATTATTTTCCAGTGTTCTCATGT
TCATTGATTCATACAGAAGATGCAGATTCTGACATCTCAAGGTATGATCG
TTCTGCTTTAACTTTTATCATAATTTTCACTTTTTTGCAAAATGCTTGTA
TGGCTATTGCTTACTTCAAATATATGACTTCGCACGAATCTTCAAGAATG
TACAATATTTGATACGAATACATAGGAAGGTTGTAAAACTAAAAGCGCTT
GAAGGCTATTTTTTTCTGATTTTAAATAATTCATTGTGAATTTTTCATAC
TTCTAAAGTCAAGTTTCAATTTCAACCGTTTTTCATTTTTAGCTGTTTAA
TTTGAAGGTTTTTCTGAGGTCTTTAATTCACAACGTGGATAAATTTTATA
TGCAACAGTTAGTCAAAGTAAATGTTCCATAAAAATATACAATATTTTTA
CATTACCTAACTTATGCCTGTAAAAACAAAAATAATTGTGCAGAAGGGAT
CAATGCAAAGGACTTCCTTCACTTTCTTTTTCTATCTCTATCAGGTGCGG
GAAATTTTGTAATACTGCCCAACGATTTTACCTTTCTCAATCATTCTGCT
TTTCGTCTACGGTAGTTCCTGAAAAAAAGTTTAAACTTAAATCACTAAAT
TTCAAACTCAAATGAGAATTCTTAATTGCGTGAATGATATAGAGATTCGT
AGCTTATATTATACATGACGGCTTCTCTTCTACTCAGTAATAAGATTTTT
CCTGTTATTTGTTTTTTGGTGAGGTACTCGCTAAAAGATTTAAATGATGT
TCTAGAAAGTATTTCATAGGGTTTATCCTTGGCAGAGACTAGAATAAGTG
TAGGTATGGCGTATGAGGTCACAATCAAATAATGAAATATTGACAAAACC
ACACCTCTACTATTTCTAAGTATTCATGAATGAAAATAAAAAGAAAGTCT
TTGGGAAAATTTTTTGATACTGTGAACGAGCTGTGAATTTTAGTGACTCG
AATTTCTTTCCTTTACAACCAAAGAGTTGACTAACCAATGGCGACAGTTT
TCCCTTATACTTTTTACTCTACATCTTGTAATCAAAATGAGAATAAATTC
TCCAAATTTTATAACACTGTGTAACATTTTTCTTACAGTTCAACAGTCAG
TGTACTACCCTCACAGAACTCAACAAATTCGACCACTTTCTCAACGACAT
TCACAGCTTCAGAATCATCAGAAGTTGATAATTCTGTGACATTCTCATCA
ACCAACTTTGTTATATCCTCCACTTATACCGATCATATTTCTCCGTCGAG
TTCTGACCTTCAAACATCATTAACAAGTACACCAAGGTACCAAGTAACCA
ATACAAGTTCCTTACTATCATCAACAAAACAGATAGAACCCTCCACGACA
CTCTCCTCCGAAGTTTCTTTGACAGTAAACGTAAAAGCCTCAGTAAGCTC
TTTCATAAAACAAGTTGAGCAATCGTCGCATTTCTCTGGCTCGACCTCAG
GAATCTTTGAATCATCGACTTTATCTACAGACTTAATACCAACTTCAACA
GAAACCTTGTCAGCAAGCCCAACTTTTTCTACTTCCAATAAATTGACCAC
GACTAATTCTCAAGTAGAAACCACCGCGACTAATTCTCAGGTAGAAACTT
CCACGACTGCTTTCCAAGCATCTACAACACTATTAAATACGTCACGCAAC
ACACAGCCCTCTTCCACGACACGACCACCTGGAGCCTCATCAATAGACCT
GAATATCGCTGCATCTAGCTTTTATCTTACGGATAGGTCAGTTTTAATTT
GATAATATTTCTGAAAACTTAAGCTGCATTGTTTAAGTTTACTTTTAAAA
TAGTTCTCTGACTTAGCGATATTAAAGTGATGTCATTACTTGAGGAACGG
AAAGCTAAAAAATAAGATTTATTGCAGCCAACTGTATCATTTCTGGCAAT
AATAATGATTTTGTATATGAGTTGAATGAATAGTCATTTGTGACTTAAGT
TGACGATTTGGGGTAGGTTTGGATTAATTTCTATTTCATTTTCTATTTAG
CAGCTTGAAAACATCATCAGATATCATACACGTCAGCACTCAAGAATACT
TCTCAACTTCGTCTGCTTTGGCGACAAAAAGTTCAGTGAGCACCTCCTCA
TCTTTCTTAAACACATCTGATATCTCATCAAAGCCGTCGAAAACCAGCTC
AAGTTCGCTTCAATCAACTACAGAGGTCCTACTTTCTTCATCTTATTCCA
AAGATGTTGAATTTACATCTATTCAACCAACTCCTGGACATTCGCCCGTT
CCCGTCAGTAGTATTAGTGTCACTACCCAAACATATAGTATCACTGTACA
AGCAACTTATAATGGGAATTGCACTGCATTAAAATCAAATGACAGTTTTG
AAAATAAGTTTTTCAATGAAGTTGAATATGAACTGAAAAACATATTTTCA
CCATCGAACGTATTAGTCCATCGTGATAATTATAAATGCGGATCTATAAT
TTTTAATTACACTGTACAGACTCAATCAAAAGAAAAAGGTTTCATGACGA
ATTTGGAGAGAGCTGAAAATGTAAACATTACTATTGGTGATTTCCATTTC
ACAGCGAAATCATCGAAGATTGTGAAAGGATTCCCTACAACAAGCTCTCC
TCCCAAGCCTGATCCTGAGAAACTAACCGTGTTGTATGCTACCGTTTTCA
GTGTAGTGGGTTTTGTTTTTGTGATCATTCTTGTCGTCATTTACATCGGT
TGCCGTAAGAATGTCATCACGAAACACAAGCGCGCGTACGAATTAGGCCG
CTTCTCAAACACAACTACGACCGCCGGTGTTGGTATGTACGGCGAAGAGT
CTCGAAAGTCGAAAACTCCTTCGGAGAGCCGTTCAGATAAGGAAGACTCT
TTACCAACCACGTGGAATAAACCAAAGGAAGAAAGTAAGGGAGGAGTGGA
CACCAAACCTAAAAACAAAGACCAAAATCAAAATGGTTTCGATAACAAAG
GACTAGAGACAGATGAAGATAAGTGAAGTAAATTTTACAGTTGTCATGTG
TACATACAGTATGTTAGCGGAAAGTACACGTAAATTTATTTGATGATGAA
ATTACAGTGTAAACCTTTTAATTTTGGTAGCAAATGGACAAGTTGATACA
TGTGCATAGCTCCTACATCTTACAATATGAGAGAATCAAAAACAGTACTA
ATCGTATTTATATATAAACAAAATGTTATGTTTAAAGAAGTTTATTGTTT
TATTGTGCTTATTTGTAAAAGTTTCTTATGAAAAATAAAAAGATGCGTAT
CTTTGTGGTAATACACTCGTTTTTGGATTCTGTCAATAAGAGTTAAAATC
TCTTAGGAATTCCTCGAGGGAATTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032817XLOC_032817Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051848-exon-scaffold_205-1575043694:86140..86172TCONS_00051848-exon-scaffold_205-1575043694:86140..86172Clytia hemisphaericaexon
TCONS_00051848-exon-scaffold_205-1575043694:85695..85782TCONS_00051848-exon-scaffold_205-1575043694:85695..85782Clytia hemisphaericaexon
TCONS_00051848-exon-scaffold_205-1575043694:85482..85533TCONS_00051848-exon-scaffold_205-1575043694:85482..85533Clytia hemisphaericaexon
TCONS_00051848-exon-scaffold_205-1575043694:83787..84434TCONS_00051848-exon-scaffold_205-1575043694:83787..84434Clytia hemisphaericaexon
TCONS_00051848-exon-scaffold_205-1575043694:82195..83522TCONS_00051848-exon-scaffold_205-1575043694:82195..83522Clytia hemisphaericaexon
TCONS_00051848-exon-scaffold_205-1510915933:86140..86172TCONS_00051848-exon-scaffold_205-1510915933:86140..86172Clytia hemisphaericaexon
TCONS_00051848-exon-scaffold_205-1510915933:85695..85782TCONS_00051848-exon-scaffold_205-1510915933:85695..85782Clytia hemisphaericaexon
TCONS_00051848-exon-scaffold_205-1510915933:85482..85533TCONS_00051848-exon-scaffold_205-1510915933:85482..85533Clytia hemisphaericaexon
TCONS_00051848-exon-scaffold_205-1510915933:83787..84434TCONS_00051848-exon-scaffold_205-1510915933:83787..84434Clytia hemisphaericaexon
TCONS_00051848-exon-scaffold_205-1510915933:82195..83522TCONS_00051848-exon-scaffold_205-1510915933:82195..83522Clytia hemisphaericaexon
TCONS_00051848-exon-scaffold_205-1491911889:86140..86172TCONS_00051848-exon-scaffold_205-1491911889:86140..86172Clytia hemisphaericaexon
TCONS_00051848-exon-scaffold_205-1491911889:85695..85782TCONS_00051848-exon-scaffold_205-1491911889:85695..85782Clytia hemisphaericaexon
TCONS_00051848-exon-scaffold_205-1491911889:85482..85533TCONS_00051848-exon-scaffold_205-1491911889:85482..85533Clytia hemisphaericaexon
TCONS_00051848-exon-scaffold_205-1491911889:83787..84434TCONS_00051848-exon-scaffold_205-1491911889:83787..84434Clytia hemisphaericaexon
TCONS_00051848-exon-scaffold_205-1491911889:82195..83522TCONS_00051848-exon-scaffold_205-1491911889:82195..83522Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:82195..86172 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.318202	0.268408	0.168748	0.222605	0	0	0	0	0	0	0	0	1.67128	1.83382	2.24322	4.5392	2.53025	3.21905	6.06777e-07	0	16.0845	7.27802	1.51379	3.6801	6.30142	5.14901	0	0	0.832583	1.16146
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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