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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051860 ID=TCONS_00051860|Name=TCONS_00051860|organism=Clytia hemisphaerica|type=transcript|length=2476bpRun BLAST on NCBI transcript from alignment at scaffold_205:120882..141565- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051860 ID=TCONS_00051860|Name=TCONS_00051860|organism=Clytia hemisphaerica|type=transcript|length=20684bp|location=Sequence derived from alignment at scaffold_205:120882..141565- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00051860 vs. Swiss-Prot (Human)
Match: CLCN5 (H(+)/Cl(-) exchange transporter 5 OS=Homo sapiens GN=CLCN5 PE=1 SV=1) HSP 1 Score: 412.535 bits (1059), Expect = 1.078e-179 Identity = 207/349 (59.31%), Postives = 259/349 (74.21%), Query Frame = 3
Query: 597 DYNYHSNVTHNINSNTYPHRSIGPGVYNALWKLTLAMLFKGLITIFTFGIKVPAGLFIPSLAVGACAGRIVGIFMENLVDSNKDFFLWKSVCQNAQGHCILPGLYAMIGAASTLGGVTRMTVSLVVIMFELTGGLTYIVPLMVAVMTSKWVGDALGKEGIYDEHIHLNGYPFLDSKEEFTHTTLAADVMKPRRNASPLICIPKTGSTVGELEHLMEEYRFNGFPVIVDHESQMLSGFVTRRDLKVAIHHGRLRNDQIVTPSKVYFSKKEPTPGAGGIPALCLRHILDVSPFTVSDATPMESVIDMFRKLGLRQILITHNGKLLGIITKKDVLRHIFQMKNQDPDSILFH 1643
DY N + P R G GVY+A+W+L L ++ K +ITIFTFG+K+P+GLFIPS+AVGA AGR++G+ ME L ++++ ++ S C CI PGLYAM+GAA+ LGGVTRMTVSLVVIMFELTGGL YIVPLM A MTSKWV DALG+EGIYD HI LNGYPFL++KEEF H TLA DVMKPRRN L + + TV ++E ++ E ++GFPV+V ESQ L GFV RRDL ++I + R + D +V+ S +YF++ P P L LR+ILD+SPFTV+D TPME V+D+FRKLGLRQ L+THNG+LLGIITKKDVL+HI QM NQDPDSILF+
Sbjct: 402 DYENRFNTS---KGGELPDRPAGVGVYSAMWQLALTLILKIVITIFTFGMKIPSGLFIPSMAVGAIAGRLLGVGMEQLAYYHQEWTVFNSWCSQG-ADCITPGLYAMVGAAACLGGVTRMTVSLVVIMFELTGGLEYIVPLMAAAMTSKWVADALGREGIYDAHIRLNGYPFLEAKEEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQMANQDPDSILFN 746 HSP 2 Score: 238.039 bits (606), Expect = 1.078e-179 Identity = 145/202 (71.78%), Postives = 174/202 (86.14%), Query Frame = 2
Query: 5 PYACGSGIPEIKTILGGFIIKGYLGYWTLVVKSFTLITAVSSGLSLGKEGPLVHVAACIGNVFVRLFPKYHGNEAKRREVLXXXXXXXXXXXXXXPIGGVLFSLEEVSYYFPMKTLWRTFFCALMAALTLGYMNPYGNGRLVMFAVDYNLPWQLFEXXXXXXXXXXXXXXXXXXXKANLFWCKLRKSSILGKKPIVERLQLS 610
PYACGSGIPEIKTIL GFII+GYLG WTLV+K+ TL+ AVSSGLSLGKEGPLVHVA C GN+ F KY NEAKRREVLSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFP+KTLWR+FF AL+AA TL +NP+GN RLV+F V+++ PW LFEL+PFI+LG+FGG++G+LFI+ N+ WC+ RK++ LGK P++E L ++
Sbjct: 163 PYACGSGIPEIKTILSGFIIRGYLGKWTLVIKTITLVLAVSSGLSLGKEGPLVHVACCCGNILCHCFNKYRKNEAKRREVLSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFTLRSINPFGNSRLVLFYVEFHTPWHLFELVPFILLGIFGGLWGALFIRTNIAWCRKRKTTQLGKYPVIEVLVVT 364 The following BLAST results are available for this feature:
BLAST of TCONS_00051860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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