TCONS_00051863 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051863
Unique NameTCONS_00051863
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length548

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051863 ID=TCONS_00051863|Name=TCONS_00051863|organism=Clytia hemisphaerica|type=transcript|length=548bp
TTNACCGTATGCTTGTGGTAGTGGTATACCTGAGATCAAAACCATCTTGG
GTGGATTCATAATCAAAGGATATCTAGGGTACTGGACACTGGTTGTTAAA
TCATTTACACTGATCACTGCTGTATCTTCTGGATTATCTCTTGGTAAAGA
AGGACCTCTAGTTCACGTTGCTGCTTGCATCGGGAACGTTTTTGTTCGAC
TCTTCCCAAAGTATCATGGAAATGAAGCTAAACGGAGAGAGGTTCTTTCA
GCAGCGGCTGCGGCAGGTGTTTCAGTGGCTTTTGGCGCACCAATCGGTGG
TGTGCTCTTCAGTTTGGAAGAGGTCAGCTACTATTTTCCGATGAAGACGT
TATGGCGTACCTTCTTTTGTGCATTGATGGCAGCTTTAACCTTGGGCTAT
ATGAATCCGTATGGTAACGGTCGATTGGTCATGTTTGCTGTTGATTACAA
TTTACCATGGCAACTCTTCGAACTCATACCTTTTATCATCCTGGGAGTGT
TCGGAGGTGTTTTTGGATCTTTATTCATAAAAGCTAATTTGTTTTGGT
Run BLAST on NCBI

transcript from alignment at scaffold_205:134200..141565-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051863 ID=TCONS_00051863|Name=TCONS_00051863|organism=Clytia hemisphaerica|type=transcript|length=7366bp|location=Sequence derived from alignment at scaffold_205:134200..141565- (Clytia hemisphaerica)
TTNACCGTATGCTTGTGGTAGTGGTATACCTGAGGTGAGTGTCATCTTTT AACATCCATCTTCCTAAGAATTATATATCTTGCCTTGTGGTAAAGAAAAA TCAAGATGACTATGCTTTTATTGCCAGTCTAGGTTGGGATGGAATTTGAA ACATTCATAATCCATGAAAGTATTTCTTTTCAGTTACATTTCCAATCTCT AAAGAACCATAAAAGCAAAGCAAAAATATTACTCAGTGGAACTTGAAAGC AATNTTTCCAGTCATTAAAATTTACAATAAAGCTAATCGTTTTAATGTAT ACCTTGATTCTTCTAATGTGCCTTCTCCACTCTCTTCTTCTGCTTCGTCG TCTGTACTTTTATAAGTTGGTATATCATTATCATTCAATTCATCAATTTC GTCAGAATCTTGGATTTGTACGTCCGAATCAGAGTCAGCTAGTAAACAAA AATAAATGCTTTAGAATAGATTGAACTTAACACTATATTTTCTTGAAAAA TGCAAATCATGTTACATTACATTGAAATTTGAAAATAACAAAACATTAGG AACGCTCACCATCTAGAGTGCAAGAGGTAACTGCTTCATTTTCATTTTGG TTTTCCTCGATTTCCACGCCTAAAAAAGAATTTTGATTCACCAACTCTAG TTTTCAAGGTTTCAAGGCAGCTTTAATAAAAAAGATTGAGCATTTCTGCT TGATTATTGAAAGAAATACAAAAAAGAAATACTTGAGAATAAATCGAACT TAACTTTAGATTATCTTGAAAAATGCATATTACATTACATTACATAAAAA ATAACAAAACCTTTTTATAGAACACTCACCATCTAGACTACAAGAAGTTC CATCATTTTCATTTTCATTTGAATCATTTTGGTTTTTTTCGATTTCCATG TCATTGGCTAGAAAAGAATTTTGAACCGACCCTTATTAACCTCTTATTCT CAAGGCAGCTTTGATAAAAATCTTCAGTTCTATTTGTTCCTTAATTATTG AAAGAAGTTTGTGTCATAAAAGTCATCTCACCTTAGATACCTATTGCTGA ATGCAACTATATAGATAAAAAAGTTTTCAATTTTGATACAAATTACTTAC TGCTTGTTTCTTTTTTCTTGGCAAGAAGCTTATCAAAAAAAGTTGGTTTG CTTGAATTTCCAGTATCTGGAGGTGCCTTTCTTTTTCTTCCACCAACTCC AACACGTGATTGACTGTATGGTTTCCTCTTGGAAGGATAACTGTGTTTAC CAGTTTTACCCATATTAGTATTTAATATCTAGCAATTAGTATTATTGTTA TTCTAATGATAAAAGTGAACAAAATGATAAAATTTTACCCTTTTACCCTT TTTACTTGAATGCTTCTTCTCGTGTTTATCTAACTATAGATTAAGATCTT ATGGTGTCAATTTTGGTGAAAAAAACCAATCTTCATAAAAATTGAAAAAA AAGTGGAAAGAAAAAAACAATTAAAACATGTCTCTAATAATATAATAACT CAATTAAAAATCTTCTCCTTTATTGTAGATAAAGATGGAGGGTAGTNAGT ACATTGAACAATACTTTTCATTACCGACTTTACAGAGAAGGTTCGATTAC ATTGTTTTTCTTTCGGCTGAATACATTTTTGATACTTTCCTTCATTTCTC TGTTAAAAACAACCGATACTGCGAAATCACAAACTGGATTAAAATGGGCT AAAAACTTTGCACTGTAAAACAATGCAGGGCCAATTGTTTTATTATTAAA GCCAAATACACAAGCAATGAACGGTGTCCACAAAAATACAAAAGAGCAAA CAATGGCAGAACACATTTTCAATGAACGTAATCTTTGCCCTTTCAGTTTT TCTTCCTCTCTATTGGCAGCAACCTGTGTTTCATGCACATTTAACGATTG GATAGATTGCAAATGCTTTTTGACTGTTCGGTATAATATGAAATTAATAG AGGCTAAGATAGTACTTCCAAAAAGCACGATCGCAGTCCCCAAGATATAG GTTGCGTTCGAGAAATATGTTAGAACTGTAAAAATGACACAAAGTAAAGA AATGATTCCAATACATTTGAAGATATACCCAATACCAAGTTCATCATACC AGAAAGGGTATCTAACAGCTAAATACCGATCGATAGATATCACCAGAGTA TAACACAACTGATTCGATATGAAAAGAGCTTGTAGCTGTATCATGAAGTC AGGAAATTCGATATGCAACCAGTACAAAATCCAATATGAAATATTCAGCA GATTATAGGATAGATGCGATATGAATAGAGCTAGAAGAAAGATGTTCTTA GCTCGTTTTTCGAACTTCAGAGCGATAATTGTAGTTGCGAACGTTGTTAT AATTGCGATGAAAACTGCTTGGATGAAAAACGCATACATAATATCTTGCA TTTTGTTATATTTGTACTGTACTGCAATGAAAGGAAAATTGAACTTCATA ATCTTAAGAGTCTGCTAAATGACGCGCCTTACGCGCCCACGCGCCCACAA ATGTTACGGCCCCACGCGCCTACGTTATGAATTTTGCATATAGTTTTTAA GTAAATACAGTCACTATGTAACATTAGTACAATAACTCAAATACGCATCC TGTCAGAGGAGTGTAAAGAGATGGAAAAACAGCTTCTTGAAAACAATGGG AATAAGGCTCGTCATTTAAGGGAGTTTGGTGGCTAATGGATTCCTTTTGT TGTTGATCAAAAAAATCTGCATAAATAGTGCGATATGATGAATTCTTTTG TTTTGAGTCTAATTATGCGTAAACTTTAGGGGCTTGTATTCTGTTTCCAG ACCAAAAGATACCTATATTTTCTTGCTCAGTATTTCCTAGCAATTCTAAT GATATAACCGCATCACGACCGCATCGTTAGATAAAACGCCTGAATGCAGA AAAGTAAGAAATTTAATCTGCTTTTCCTGAATCTCTACCAAATTTTGTCA AAACAATTTAAAATCATTGTGATGAGAATTTTTAAGGCAATAAAATGGTT TAAAATTTGTTATGTCTAAAGAGGGCGATTTAGTAAGGTTTGTTAGCACG AAAATACTTTAGATGGTGATAAAATCATGAAATTTGGCACAGGTGACCCT TAGACGGTCTAAAACTTGATTTAAAACAGAAACACCAATTTTTTTTCACC CGGTTACCTGCCAGATGCTTTTATCGCCATCTGAAGTATTCTTACGTTTT TATGTGCTAACAGACCTTACTAATCTATAGTATAAAGCATATTCCAGCAT ATAGAAACCAGTCAATTTTTAGGACGAGCCGCCTTTTTTGAACTTTCTCT AACGACCTTATCAAAGCTAAAACAAAGCGTTTTCAATGGAAATTACTTTT GGTAATCAGAGAAGCTGGTTTTCTTATTCATCCCATTTCTCTGATCCTAC CAAAAACGAGATATTCTTCTTTTTGCTGTCTTCCTTATTAGGTTCTATTC TTTAATTTCTATATGATTCACATATTTCTCTAAAATCAAACCCATTGATA GAACAAAGGACCAAATTTCCGTCTCCTGGGGGAATAGGGATATTAAAATT TAAAACTAAAACGTGATTCAAGCACCACAGATAATTTGATTGAATTCAGA ATTAGAATTACTTTAGGCGTACAAACTTTCGCGAGCCGAAACGATTTTCG TGCGAGAATTTTGGCCTTTTTCGCGAAAGTTAATGTTTTTTAAAATTCTT TACAGGGCAATTCGTAAAAGTTTTATGTTCGTGAAAATTTCTCAAAAATT TCCGAAATTGAAAAACCTCGAAATTGTAATAAATATCAAATTTTTGGCAT ATTTTTATCCTTTAATGCCTTTTTAAAGTCGAAAAGCAACCGTCTTCATC GCATTTGATTTAAGCAATATTTTTCACTTTTAAGGCAATTTTCATTCGAC AATTTCAATTTTTATCCAACGATTCGTGAAAGTTTATGCTCGCGAAAAAC ATTTTTTCCTCAAATTTGCGAAAGTAAATGTCTTAAATTTCGCGATTTTT CGACCTCGCGAAAGTTTGTACGCCTAAAATAGAAGATATTTTTACGTTTC CAGTAGCAGAAAAACCCCTAAAAAAAGATGGATTACCCAAGAAAAACATT TTTCATACGTTTTTTTCAAACAGATCAAAACCATCTTGGGTGGATTCATA ATCAAAGGATATCTAGGGTACTGGACACTGGTTGTTAAATCATTTACACT GATCACTGCTGTATCTTCTGGATTATCTCTTGGTAAAGAAGGACCTCTAG TTCACGTTGCTGCTTGCATCGGGAACGTTTTTGTTCGACTCTTCCCAAAG TATCATGGAAATGAAGCTAAACGGAGAGAGGTGAGAAGACTTCATAATAT ATTTCTTTCATACCCTATTCATTCCTATTGTAACTTTTGTTTTGAATAAG GTTTTCCTTTTTTCAATTTTTTTGTAATTTCGAAGTTATTAGGAACCTAT CTTCTTGTCCTGATGGCCATAATTTAAAGAAGATATGTTTTGAACGTTTT TGCTAATGAAAGTATTTCCAGCTTGTTTGTAAAGTATATAAAACAAACAT CTTGAAGACAATTTCCCCCTTTTAATTCTTGCATACATTTTTTCGTGTTT TTATTAATTGCTACTTGATTGGAATGATCTGTTCATAAACTGATTTTTTC CCATCTGAACAAAGTCTTTTTTATGATATTTCAGGTTCTTTCAGCAGCGG CTGCGGCAGGTGTTTCAGTGGCTTTTGGCGCACCAATCGGTGGTGTGCTC TTCAGTTTGGAAGAGGTAAAACTTAATTGAATAAAAACAGCCTATTTATA TTCGTAGGAAATACAAATGGTAATACCAGATCAAATTTTACACATTTTTT TTATAAGCAGCCAAGTTGCTAAGGCTCCAGTCCTAAAATTAGCCAATTTT TTTCTTCACAGGGGGGGGGGGCAAGCAGTTAGTACAGAACACTATGTGTA CTAACTGATTTTTGGAAAACTCTGTACCCCACCACCACCCCCTGTCACTT AGTACACCGTGTACTAACTGTTTTTGACCTTGCTCAATATATATACCACC CCTAAAAATAAGGATACGTCTCTCTACGGTGCATTCCAGGTGAATTTCAC ACTCCAGAGAGGTTTTATGAGGTGTGTTTTTAACTGTTTTAATTAGTAGT AACACTATCAATAATACATTTTTTAAACAGAAAACACAGCATGTTTTATC AGCAACTTATCCACCATCTTTTAAATAATCTGTTTTCCCGATTATGGATC GGATGATCGGATTACCAAAACAAAACAAAAAACGTTCGAAAGTTCGACAT TTTCAAATTCGAATGTTTTATTTTGAATTATTTCTAAGAGTTCTAAGAGT TCCTGGAAGTGTGATGTCATATGTCAAGCTGTTAAAAGGTATTCCTGACC GTCCTAGAAAGAAGATCCATAAAAAAGATAGAATCATAAACCTGTCATAA ACTGATAACAGTAAAATTCTCAGTTTTGAAATCAGTTACTACACCTTTTT ACTTCCAAAATTCTGTATACACCACCCCTTTTGGCAGTTAGTACTACAGG TGTACTAACTGCATTTCGCAAAATTGAAAAATGGACCCACCACGGTACTA AGTGTCATGGGTGTCGTGTACTAACTGCTTCCCCCCCCTGTTCTTCACTA TATTGTATAATCTAAAAGATTTTTAGATGCATGGCAAACGATAACCCTTG ACCCAATAAGCATAAATATGGTATAATATCAGGGGTGGTCAGAAAATGAG CTAGAATGCTAATCAACCCCAGCCCTGACCCAAAAATTGGTGCTGCTTAT AAAAAAAACGTGTATTCCAGTTTTTGAGCATCTGTGTAGCTTTAAAATTA TCTACAAGAGTGTTTTAGTTGAACATTCTTATAGCGGCCTATCAGTGTCT CAATGTCAGAATATTGCATGAAAACGAGACGATTTCATTTGCATCCACCT TATAACAACCCCAATTTCAGCACAATTTTTTTGACGTCACTTTTTCGAAT ACAAGCGTCACAGAAAAGGAACCTGTGATTGTTTCCCTTCGTCTATCACA TTTTTAATTGCGACTTTTCTAAAATATAGTTTAAGCGATTTTTTTCCGAA TTACCTATTCGATAAAACATATCTGAAAAAATGAAAATTAGCTGGTTAGC CCTTTAACTTAACTGTACACAGACCCAGTATCTACGGCTAATTTCAAAAT TCATTTCCGTAGAGGGTCTGTTGTCATTGTCTTTTCTCATTTGAGATTTT TCAAACCGACCGCTGCGATGAAGTATTGGTGAGAGAGGAGAGACGATGAG AGAAGTGTTGCTATTTATAAATCATACTTCGTCGCAGAGGTCTCCGTACG GGAATTTTTTATCAAACAGACAATGTGCACAGAGTGTACTACAAAGCGAT AAACGTGAGATACACTCTGGTACAGAGTACCCTTTAACGGACACTTCCGT TTTAGGTCAGCTACTATTTTCCGATGAAGACGTTATGGCGTACCTTCTTT TGTGCATTGATGGCAGCTTTAACCTTGGGCTATATGAATCCGTATGGTAA CGGTCGATTGGTCATGTTTGCTGTTGATTACAATTTACCATGGCAACTCT TCGAACTCATACCTTTTATCATCCTGGGAGTGTTCGGAGTAAGTGTTTTT TTTCTTGATTATTTGGTAGTATTAAATTTTAGATAAAGTATATGTAATCA CATGATAACGAGTGCAATTCGAATATAATTGCACGAGTGATTTTTTTGTT ATTAATTTTCCGAGTCCGAAAGGACGAGGAAAATTCGAAACAAAAAAATG ACGAGTGCAATTTTCGAATTGTACGAGTTATTATGTGATTACGAGCTAAT CGCACAATGGCTTTCACTACTTTTTCCCAGTTAGGAAAGTAAATCACAGA AATTACACTGAGAGTTTTAGATTTTTCTCTTCTCTTTATGTCTTTCTTTT ATTGTTGTTTATTGATTTTCTTTCTCACAAAATAAATTTCGAATGCAATT AAAACGTTCGATGCAAAGAAAATGTAAGAAAAAACATATAAATCACTTTT TTGTACATTGGCGCGGCATCGAAGAGTGTGATTAACGATTAATTGCTCTC TACATGATGCAATTAACGATTAATTGCTCTCTTTGAGGGCGTGCCAAATA AGAAAAAATAACCCATCGTGCGATTAATGGTATAATTTACGATTAAGAAT TTTTTGAGGATTGAAGTAACCTTATTTCCGAGAGGATTTGGAAAAGCCAG CAACAAATATTCACAAATCAATGCAGAGAAAATAATTGCTAAATTTATGG ACTGGCGTATCTTTCATTTTCAGGGTGTTTTTGGATCTTTATTCATAAAA GCTAATTTGTTTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032821XLOC_032821Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051863-exon-scaffold_205-1575043694:141532..141565TCONS_00051863-exon-scaffold_205-1575043694:141532..141565Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1575043694:137236..137442TCONS_00051863-exon-scaffold_205-1575043694:137236..137442Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1575043694:136801..136881TCONS_00051863-exon-scaffold_205-1575043694:136801..136881Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1575043694:134928..135110TCONS_00051863-exon-scaffold_205-1575043694:134928..135110Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1575043694:134200..134242TCONS_00051863-exon-scaffold_205-1575043694:134200..134242Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1510915933:141532..141565TCONS_00051863-exon-scaffold_205-1510915933:141532..141565Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1510915933:137236..137442TCONS_00051863-exon-scaffold_205-1510915933:137236..137442Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1510915933:136801..136881TCONS_00051863-exon-scaffold_205-1510915933:136801..136881Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1510915933:134928..135110TCONS_00051863-exon-scaffold_205-1510915933:134928..135110Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1510915933:134200..134242TCONS_00051863-exon-scaffold_205-1510915933:134200..134242Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1491911889:141532..141565TCONS_00051863-exon-scaffold_205-1491911889:141532..141565Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1491911889:137236..137442TCONS_00051863-exon-scaffold_205-1491911889:137236..137442Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1491911889:136801..136881TCONS_00051863-exon-scaffold_205-1491911889:136801..136881Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1491911889:134928..135110TCONS_00051863-exon-scaffold_205-1491911889:134928..135110Clytia hemisphaericaexon
TCONS_00051863-exon-scaffold_205-1491911889:134200..134242TCONS_00051863-exon-scaffold_205-1491911889:134200..134242Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:134200..141565 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (9.00565 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.62112 2.11202 1.81549 0 1.09516 0.00515613 1.03263e-06 2.41972 5.82322 2.85592 7.92132 5.68906 7.4631 5.08877 6.29784 9.00565 8.83471 5.81586 2.41083 7.44866 4.37843 3.55596 6.09864 6.70137 1.14303 0 2.49527 2.1817 3.45165 7.26785
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
50100150200250300350400450500Expect = 2.42e-67 / Id = 77.56SequenceCLCN5
Match NameE-valueIdentityDescription
CLCN52.416e-6777.56H(+)/Cl(-) exchange transporter 5 OS=Homo sapiens ... [more]
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