Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051863 ID=TCONS_00051863|Name=TCONS_00051863|organism=Clytia hemisphaerica|type=transcript|length=548bp TTNACCGTATGCTTGTGGTAGTGGTATACCTGAGATCAAAACCATCTTGG GTGGATTCATAATCAAAGGATATCTAGGGTACTGGACACTGGTTGTTAAA TCATTTACACTGATCACTGCTGTATCTTCTGGATTATCTCTTGGTAAAGA AGGACCTCTAGTTCACGTTGCTGCTTGCATCGGGAACGTTTTTGTTCGAC TCTTCCCAAAGTATCATGGAAATGAAGCTAAACGGAGAGAGGTTCTTTCA GCAGCGGCTGCGGCAGGTGTTTCAGTGGCTTTTGGCGCACCAATCGGTGG TGTGCTCTTCAGTTTGGAAGAGGTCAGCTACTATTTTCCGATGAAGACGT TATGGCGTACCTTCTTTTGTGCATTGATGGCAGCTTTAACCTTGGGCTAT ATGAATCCGTATGGTAACGGTCGATTGGTCATGTTTGCTGTTGATTACAA TTTACCATGGCAACTCTTCGAACTCATACCTTTTATCATCCTGGGAGTGT TCGGAGGTGTTTTTGGATCTTTATTCATAAAAGCTAATTTGTTTTGGT Run BLAST on NCBI transcript from alignment at scaffold_205:134200..141565- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051863 ID=TCONS_00051863|Name=TCONS_00051863|organism=Clytia hemisphaerica|type=transcript|length=7366bp|location=Sequence derived from alignment at scaffold_205:134200..141565- (Clytia hemisphaerica) TTNACCGTATGCTTGTGGTAGTGGTATACCTGAGGTGAGTGTCATCTTTT
AACATCCATCTTCCTAAGAATTATATATCTTGCCTTGTGGTAAAGAAAAA
TCAAGATGACTATGCTTTTATTGCCAGTCTAGGTTGGGATGGAATTTGAA
ACATTCATAATCCATGAAAGTATTTCTTTTCAGTTACATTTCCAATCTCT
AAAGAACCATAAAAGCAAAGCAAAAATATTACTCAGTGGAACTTGAAAGC
AATNTTTCCAGTCATTAAAATTTACAATAAAGCTAATCGTTTTAATGTAT
ACCTTGATTCTTCTAATGTGCCTTCTCCACTCTCTTCTTCTGCTTCGTCG
TCTGTACTTTTATAAGTTGGTATATCATTATCATTCAATTCATCAATTTC
GTCAGAATCTTGGATTTGTACGTCCGAATCAGAGTCAGCTAGTAAACAAA
AATAAATGCTTTAGAATAGATTGAACTTAACACTATATTTTCTTGAAAAA
TGCAAATCATGTTACATTACATTGAAATTTGAAAATAACAAAACATTAGG
AACGCTCACCATCTAGAGTGCAAGAGGTAACTGCTTCATTTTCATTTTGG
TTTTCCTCGATTTCCACGCCTAAAAAAGAATTTTGATTCACCAACTCTAG
TTTTCAAGGTTTCAAGGCAGCTTTAATAAAAAAGATTGAGCATTTCTGCT
TGATTATTGAAAGAAATACAAAAAAGAAATACTTGAGAATAAATCGAACT
TAACTTTAGATTATCTTGAAAAATGCATATTACATTACATTACATAAAAA
ATAACAAAACCTTTTTATAGAACACTCACCATCTAGACTACAAGAAGTTC
CATCATTTTCATTTTCATTTGAATCATTTTGGTTTTTTTCGATTTCCATG
TCATTGGCTAGAAAAGAATTTTGAACCGACCCTTATTAACCTCTTATTCT
CAAGGCAGCTTTGATAAAAATCTTCAGTTCTATTTGTTCCTTAATTATTG
AAAGAAGTTTGTGTCATAAAAGTCATCTCACCTTAGATACCTATTGCTGA
ATGCAACTATATAGATAAAAAAGTTTTCAATTTTGATACAAATTACTTAC
TGCTTGTTTCTTTTTTCTTGGCAAGAAGCTTATCAAAAAAAGTTGGTTTG
CTTGAATTTCCAGTATCTGGAGGTGCCTTTCTTTTTCTTCCACCAACTCC
AACACGTGATTGACTGTATGGTTTCCTCTTGGAAGGATAACTGTGTTTAC
CAGTTTTACCCATATTAGTATTTAATATCTAGCAATTAGTATTATTGTTA
TTCTAATGATAAAAGTGAACAAAATGATAAAATTTTACCCTTTTACCCTT
TTTACTTGAATGCTTCTTCTCGTGTTTATCTAACTATAGATTAAGATCTT
ATGGTGTCAATTTTGGTGAAAAAAACCAATCTTCATAAAAATTGAAAAAA
AAGTGGAAAGAAAAAAACAATTAAAACATGTCTCTAATAATATAATAACT
CAATTAAAAATCTTCTCCTTTATTGTAGATAAAGATGGAGGGTAGTNAGT
ACATTGAACAATACTTTTCATTACCGACTTTACAGAGAAGGTTCGATTAC
ATTGTTTTTCTTTCGGCTGAATACATTTTTGATACTTTCCTTCATTTCTC
TGTTAAAAACAACCGATACTGCGAAATCACAAACTGGATTAAAATGGGCT
AAAAACTTTGCACTGTAAAACAATGCAGGGCCAATTGTTTTATTATTAAA
GCCAAATACACAAGCAATGAACGGTGTCCACAAAAATACAAAAGAGCAAA
CAATGGCAGAACACATTTTCAATGAACGTAATCTTTGCCCTTTCAGTTTT
TCTTCCTCTCTATTGGCAGCAACCTGTGTTTCATGCACATTTAACGATTG
GATAGATTGCAAATGCTTTTTGACTGTTCGGTATAATATGAAATTAATAG
AGGCTAAGATAGTACTTCCAAAAAGCACGATCGCAGTCCCCAAGATATAG
GTTGCGTTCGAGAAATATGTTAGAACTGTAAAAATGACACAAAGTAAAGA
AATGATTCCAATACATTTGAAGATATACCCAATACCAAGTTCATCATACC
AGAAAGGGTATCTAACAGCTAAATACCGATCGATAGATATCACCAGAGTA
TAACACAACTGATTCGATATGAAAAGAGCTTGTAGCTGTATCATGAAGTC
AGGAAATTCGATATGCAACCAGTACAAAATCCAATATGAAATATTCAGCA
GATTATAGGATAGATGCGATATGAATAGAGCTAGAAGAAAGATGTTCTTA
GCTCGTTTTTCGAACTTCAGAGCGATAATTGTAGTTGCGAACGTTGTTAT
AATTGCGATGAAAACTGCTTGGATGAAAAACGCATACATAATATCTTGCA
TTTTGTTATATTTGTACTGTACTGCAATGAAAGGAAAATTGAACTTCATA
ATCTTAAGAGTCTGCTAAATGACGCGCCTTACGCGCCCACGCGCCCACAA
ATGTTACGGCCCCACGCGCCTACGTTATGAATTTTGCATATAGTTTTTAA
GTAAATACAGTCACTATGTAACATTAGTACAATAACTCAAATACGCATCC
TGTCAGAGGAGTGTAAAGAGATGGAAAAACAGCTTCTTGAAAACAATGGG
AATAAGGCTCGTCATTTAAGGGAGTTTGGTGGCTAATGGATTCCTTTTGT
TGTTGATCAAAAAAATCTGCATAAATAGTGCGATATGATGAATTCTTTTG
TTTTGAGTCTAATTATGCGTAAACTTTAGGGGCTTGTATTCTGTTTCCAG
ACCAAAAGATACCTATATTTTCTTGCTCAGTATTTCCTAGCAATTCTAAT
GATATAACCGCATCACGACCGCATCGTTAGATAAAACGCCTGAATGCAGA
AAAGTAAGAAATTTAATCTGCTTTTCCTGAATCTCTACCAAATTTTGTCA
AAACAATTTAAAATCATTGTGATGAGAATTTTTAAGGCAATAAAATGGTT
TAAAATTTGTTATGTCTAAAGAGGGCGATTTAGTAAGGTTTGTTAGCACG
AAAATACTTTAGATGGTGATAAAATCATGAAATTTGGCACAGGTGACCCT
TAGACGGTCTAAAACTTGATTTAAAACAGAAACACCAATTTTTTTTCACC
CGGTTACCTGCCAGATGCTTTTATCGCCATCTGAAGTATTCTTACGTTTT
TATGTGCTAACAGACCTTACTAATCTATAGTATAAAGCATATTCCAGCAT
ATAGAAACCAGTCAATTTTTAGGACGAGCCGCCTTTTTTGAACTTTCTCT
AACGACCTTATCAAAGCTAAAACAAAGCGTTTTCAATGGAAATTACTTTT
GGTAATCAGAGAAGCTGGTTTTCTTATTCATCCCATTTCTCTGATCCTAC
CAAAAACGAGATATTCTTCTTTTTGCTGTCTTCCTTATTAGGTTCTATTC
TTTAATTTCTATATGATTCACATATTTCTCTAAAATCAAACCCATTGATA
GAACAAAGGACCAAATTTCCGTCTCCTGGGGGAATAGGGATATTAAAATT
TAAAACTAAAACGTGATTCAAGCACCACAGATAATTTGATTGAATTCAGA
ATTAGAATTACTTTAGGCGTACAAACTTTCGCGAGCCGAAACGATTTTCG
TGCGAGAATTTTGGCCTTTTTCGCGAAAGTTAATGTTTTTTAAAATTCTT
TACAGGGCAATTCGTAAAAGTTTTATGTTCGTGAAAATTTCTCAAAAATT
TCCGAAATTGAAAAACCTCGAAATTGTAATAAATATCAAATTTTTGGCAT
ATTTTTATCCTTTAATGCCTTTTTAAAGTCGAAAAGCAACCGTCTTCATC
GCATTTGATTTAAGCAATATTTTTCACTTTTAAGGCAATTTTCATTCGAC
AATTTCAATTTTTATCCAACGATTCGTGAAAGTTTATGCTCGCGAAAAAC
ATTTTTTCCTCAAATTTGCGAAAGTAAATGTCTTAAATTTCGCGATTTTT
CGACCTCGCGAAAGTTTGTACGCCTAAAATAGAAGATATTTTTACGTTTC
CAGTAGCAGAAAAACCCCTAAAAAAAGATGGATTACCCAAGAAAAACATT
TTTCATACGTTTTTTTCAAACAGATCAAAACCATCTTGGGTGGATTCATA
ATCAAAGGATATCTAGGGTACTGGACACTGGTTGTTAAATCATTTACACT
GATCACTGCTGTATCTTCTGGATTATCTCTTGGTAAAGAAGGACCTCTAG
TTCACGTTGCTGCTTGCATCGGGAACGTTTTTGTTCGACTCTTCCCAAAG
TATCATGGAAATGAAGCTAAACGGAGAGAGGTGAGAAGACTTCATAATAT
ATTTCTTTCATACCCTATTCATTCCTATTGTAACTTTTGTTTTGAATAAG
GTTTTCCTTTTTTCAATTTTTTTGTAATTTCGAAGTTATTAGGAACCTAT
CTTCTTGTCCTGATGGCCATAATTTAAAGAAGATATGTTTTGAACGTTTT
TGCTAATGAAAGTATTTCCAGCTTGTTTGTAAAGTATATAAAACAAACAT
CTTGAAGACAATTTCCCCCTTTTAATTCTTGCATACATTTTTTCGTGTTT
TTATTAATTGCTACTTGATTGGAATGATCTGTTCATAAACTGATTTTTTC
CCATCTGAACAAAGTCTTTTTTATGATATTTCAGGTTCTTTCAGCAGCGG
CTGCGGCAGGTGTTTCAGTGGCTTTTGGCGCACCAATCGGTGGTGTGCTC
TTCAGTTTGGAAGAGGTAAAACTTAATTGAATAAAAACAGCCTATTTATA
TTCGTAGGAAATACAAATGGTAATACCAGATCAAATTTTACACATTTTTT
TTATAAGCAGCCAAGTTGCTAAGGCTCCAGTCCTAAAATTAGCCAATTTT
TTTCTTCACAGGGGGGGGGGGCAAGCAGTTAGTACAGAACACTATGTGTA
CTAACTGATTTTTGGAAAACTCTGTACCCCACCACCACCCCCTGTCACTT
AGTACACCGTGTACTAACTGTTTTTGACCTTGCTCAATATATATACCACC
CCTAAAAATAAGGATACGTCTCTCTACGGTGCATTCCAGGTGAATTTCAC
ACTCCAGAGAGGTTTTATGAGGTGTGTTTTTAACTGTTTTAATTAGTAGT
AACACTATCAATAATACATTTTTTAAACAGAAAACACAGCATGTTTTATC
AGCAACTTATCCACCATCTTTTAAATAATCTGTTTTCCCGATTATGGATC
GGATGATCGGATTACCAAAACAAAACAAAAAACGTTCGAAAGTTCGACAT
TTTCAAATTCGAATGTTTTATTTTGAATTATTTCTAAGAGTTCTAAGAGT
TCCTGGAAGTGTGATGTCATATGTCAAGCTGTTAAAAGGTATTCCTGACC
GTCCTAGAAAGAAGATCCATAAAAAAGATAGAATCATAAACCTGTCATAA
ACTGATAACAGTAAAATTCTCAGTTTTGAAATCAGTTACTACACCTTTTT
ACTTCCAAAATTCTGTATACACCACCCCTTTTGGCAGTTAGTACTACAGG
TGTACTAACTGCATTTCGCAAAATTGAAAAATGGACCCACCACGGTACTA
AGTGTCATGGGTGTCGTGTACTAACTGCTTCCCCCCCCTGTTCTTCACTA
TATTGTATAATCTAAAAGATTTTTAGATGCATGGCAAACGATAACCCTTG
ACCCAATAAGCATAAATATGGTATAATATCAGGGGTGGTCAGAAAATGAG
CTAGAATGCTAATCAACCCCAGCCCTGACCCAAAAATTGGTGCTGCTTAT
AAAAAAAACGTGTATTCCAGTTTTTGAGCATCTGTGTAGCTTTAAAATTA
TCTACAAGAGTGTTTTAGTTGAACATTCTTATAGCGGCCTATCAGTGTCT
CAATGTCAGAATATTGCATGAAAACGAGACGATTTCATTTGCATCCACCT
TATAACAACCCCAATTTCAGCACAATTTTTTTGACGTCACTTTTTCGAAT
ACAAGCGTCACAGAAAAGGAACCTGTGATTGTTTCCCTTCGTCTATCACA
TTTTTAATTGCGACTTTTCTAAAATATAGTTTAAGCGATTTTTTTCCGAA
TTACCTATTCGATAAAACATATCTGAAAAAATGAAAATTAGCTGGTTAGC
CCTTTAACTTAACTGTACACAGACCCAGTATCTACGGCTAATTTCAAAAT
TCATTTCCGTAGAGGGTCTGTTGTCATTGTCTTTTCTCATTTGAGATTTT
TCAAACCGACCGCTGCGATGAAGTATTGGTGAGAGAGGAGAGACGATGAG
AGAAGTGTTGCTATTTATAAATCATACTTCGTCGCAGAGGTCTCCGTACG
GGAATTTTTTATCAAACAGACAATGTGCACAGAGTGTACTACAAAGCGAT
AAACGTGAGATACACTCTGGTACAGAGTACCCTTTAACGGACACTTCCGT
TTTAGGTCAGCTACTATTTTCCGATGAAGACGTTATGGCGTACCTTCTTT
TGTGCATTGATGGCAGCTTTAACCTTGGGCTATATGAATCCGTATGGTAA
CGGTCGATTGGTCATGTTTGCTGTTGATTACAATTTACCATGGCAACTCT
TCGAACTCATACCTTTTATCATCCTGGGAGTGTTCGGAGTAAGTGTTTTT
TTTCTTGATTATTTGGTAGTATTAAATTTTAGATAAAGTATATGTAATCA
CATGATAACGAGTGCAATTCGAATATAATTGCACGAGTGATTTTTTTGTT
ATTAATTTTCCGAGTCCGAAAGGACGAGGAAAATTCGAAACAAAAAAATG
ACGAGTGCAATTTTCGAATTGTACGAGTTATTATGTGATTACGAGCTAAT
CGCACAATGGCTTTCACTACTTTTTCCCAGTTAGGAAAGTAAATCACAGA
AATTACACTGAGAGTTTTAGATTTTTCTCTTCTCTTTATGTCTTTCTTTT
ATTGTTGTTTATTGATTTTCTTTCTCACAAAATAAATTTCGAATGCAATT
AAAACGTTCGATGCAAAGAAAATGTAAGAAAAAACATATAAATCACTTTT
TTGTACATTGGCGCGGCATCGAAGAGTGTGATTAACGATTAATTGCTCTC
TACATGATGCAATTAACGATTAATTGCTCTCTTTGAGGGCGTGCCAAATA
AGAAAAAATAACCCATCGTGCGATTAATGGTATAATTTACGATTAAGAAT
TTTTTGAGGATTGAAGTAACCTTATTTCCGAGAGGATTTGGAAAAGCCAG
CAACAAATATTCACAAATCAATGCAGAGAAAATAATTGCTAAATTTATGG
ACTGGCGTATCTTTCATTTTCAGGGTGTTTTTGGATCTTTATTCATAAAA
GCTAATTTGTTTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00051863-exon-scaffold_205-1575043694:141532..141565 | TCONS_00051863-exon-scaffold_205-1575043694:141532..141565 | Clytia hemisphaerica | exon |
TCONS_00051863-exon-scaffold_205-1575043694:137236..137442 | TCONS_00051863-exon-scaffold_205-1575043694:137236..137442 | Clytia hemisphaerica | exon |
TCONS_00051863-exon-scaffold_205-1575043694:136801..136881 | TCONS_00051863-exon-scaffold_205-1575043694:136801..136881 | Clytia hemisphaerica | exon |
TCONS_00051863-exon-scaffold_205-1575043694:134928..135110 | TCONS_00051863-exon-scaffold_205-1575043694:134928..135110 | Clytia hemisphaerica | exon |
TCONS_00051863-exon-scaffold_205-1575043694:134200..134242 | TCONS_00051863-exon-scaffold_205-1575043694:134200..134242 | Clytia hemisphaerica | exon |
TCONS_00051863-exon-scaffold_205-1510915933:141532..141565 | TCONS_00051863-exon-scaffold_205-1510915933:141532..141565 | Clytia hemisphaerica | exon |
TCONS_00051863-exon-scaffold_205-1510915933:137236..137442 | TCONS_00051863-exon-scaffold_205-1510915933:137236..137442 | Clytia hemisphaerica | exon |
TCONS_00051863-exon-scaffold_205-1510915933:136801..136881 | TCONS_00051863-exon-scaffold_205-1510915933:136801..136881 | Clytia hemisphaerica | exon |
TCONS_00051863-exon-scaffold_205-1510915933:134928..135110 | TCONS_00051863-exon-scaffold_205-1510915933:134928..135110 | Clytia hemisphaerica | exon |
TCONS_00051863-exon-scaffold_205-1510915933:134200..134242 | TCONS_00051863-exon-scaffold_205-1510915933:134200..134242 | Clytia hemisphaerica | exon |
TCONS_00051863-exon-scaffold_205-1491911889:141532..141565 | TCONS_00051863-exon-scaffold_205-1491911889:141532..141565 | Clytia hemisphaerica | exon |
TCONS_00051863-exon-scaffold_205-1491911889:137236..137442 | TCONS_00051863-exon-scaffold_205-1491911889:137236..137442 | Clytia hemisphaerica | exon |
TCONS_00051863-exon-scaffold_205-1491911889:136801..136881 | TCONS_00051863-exon-scaffold_205-1491911889:136801..136881 | Clytia hemisphaerica | exon |
TCONS_00051863-exon-scaffold_205-1491911889:134928..135110 | TCONS_00051863-exon-scaffold_205-1491911889:134928..135110 | Clytia hemisphaerica | exon |
TCONS_00051863-exon-scaffold_205-1491911889:134200..134242 | TCONS_00051863-exon-scaffold_205-1491911889:134200..134242 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_205 | supercontig | scaffold_205:134200..141565 - |
Blast
BLAST of TCONS_00051863 vs. Swiss-Prot (Human)
Match: CLCN5 (H(+)/Cl(-) exchange transporter 5 OS=Homo sapiens GN=CLCN5 PE=1 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 2.416e-67 Identity = 121/156 (77.56%), Postives = 135/156 (86.54%), Query Frame = 2 Query: 5 PYACGSGIPEIKTILGGFIIKGYLGYWTLVVKSFTLITAVSSGLSLGKEGPLVHVAACIGNVFVRLFPKYHGNEAKRREVLXXXXXXXXXXXXXXPIGGVLFSLEEVSYYFPMKTLWRTFFCALMAALTLGYMNPYGNGRLVMFAVDYNLPWQLFE 472
PYACGSGIPEIKTIL GFII+GYLG WTLV+K+ TL+ AVSSGLSLGKEGPLVHVA C GN+ F KY NEAKRREVLSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFP+KTLWR+FF AL+AA TL +NP+GN RLV+F V+++ PW LFE
Sbjct: 163 PYACGSGIPEIKTILSGFIIRGYLGKWTLVIKTITLVLAVSSGLSLGKEGPLVHVACCCGNILCHCFNKYRKNEAKRREVLSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFTLRSINPFGNSRLVLFYVEFHTPWHLFE 318
The following BLAST results are available for this feature:
|