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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051864 ID=TCONS_00051864|Name=TCONS_00051864|organism=Clytia hemisphaerica|type=transcript|length=762bp
CAATATTTTAAATACTGTGGAGCTAATTTGTACCTTGATGGCCAACTTGG
GACAGATTTTGGagttaaactcccttttgaaaaactttaattagCTCCAT
TAGATTATTTGCTTGTCTTATCGGTTTGTGGGGAATTTTAGTTTGACGTA
GACTTGGTGGGATGCGGCTCTACGTGTTCACAACAACTTTGGTCTGCAGT
GCAGAAAAACACTGAAAGCGGTCAGATCCATTATATCAAACAATCCCAGT
CCAGCACTCAAATTCACAAGATGGATATCAGCATTGAACAGATGGGCCGA
TATATCAGTCCAGTGAACCCAAACATTTATCCTCACCTTACACTCATCTT
ATTGGGCATTGGAATTTTCTTTACTGCTTGGTTTTTTGTTTATGAAGTTA
CTTCCACAAAATATTCACGAGATATCTACAAAGAATTATTGGTTGCATTA
TTCGCTGCTATTTTCATGGGATTCGGATCGATGTTTTTACTACTCTGGGT
TGGAATATATGTATGACGTTTCCGTCCGTTTAACAAGACCAACGTGATGC
ACGCATGTCAATTTATAGGGACTATAAAgaatttgtagattttttgtTAT
CGCTTTTTGAATATAATTATGAATACCAATTTTCCATAAAGattgaattc
aattttttaatcattacccttttctcaaaaatagatttcataaaaaacaa
ttATAACCTGTTCCCAAAAATGACTAATGCCGTTCCAAGCCGTGTGTCAA
GTTAGAAAACTG Run BLAST on NCBI transcript from alignment at scaffold_205:163466..171715- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051864 ID=TCONS_00051864|Name=TCONS_00051864|organism=Clytia hemisphaerica|type=transcript|length=8250bp|location=Sequence derived from alignment at scaffold_205:163466..171715- (Clytia hemisphaerica)
CAATATTTTAAATACTGTGGAGCTAATTTGTACCTTGATGGCCAACTTGG
GACAGATTTTGGAGTTAAACTCCCTTTTGAAAAACTTTAATTAGCTCCAT
TAGATTATTTGCTTGTCTTATCGGTTTGTGGGGAATTTTAGTTTGACGTA
GACTTGGTGGGATGCGGCTCTACGTGTTCACAACAACTTTGGTCTGCAGT
GCAGAAAAACACTGAAAGCGGTCAGATCCATTATATCAAACAATCCCAGT
CCAGCACTCAAATTCACAAGATGGTAAGTTTTTTTCATCACTTTACTCAT
TTGAGATGGTTAAGGATATTTGATGTCATCCCTGATAATCGAGTTTGATG
TTGAATTACACACAAAAGGAAGTCCTCTCTGGTTTTTTTTAAATTGCTGC
ATTGCTGTCAGTAGACTAGACTGTCGGACTGTTTACCAAATTTCAGTCAA
TAAGATTGTTTCATTTCACATGGTCCTTCTTTTCAGTCCCAGTGTTGGCC
TCACAGTGCCTAACATGAGGGGTGGCTGCAACATTCATAACATATCTTTT
TATTTGTTTCAATCCGTGATCCTAAGGCTTTTTCATAAGTTTCATTTAAT
TATTGCTTTTATCAAAATGGGGGATTCGGAAAATTTTTACATTTTACATG
TTTAATTTTTGCTCAAACCCCAGTTTGCAGAATATGGCAGAAACTGTTAA
GATTTCCAGGGCAGACAGTGCTCTTTTGTGAGAGGCAGGAGGAGAATAAT
TTGATCAAATTTTAATCTCGCTCAGGGTCGGAAAAGCTTAAAATTTCAAA
ATTTTAACCATTTTCAATGGCGTATTACTTCTAATAAAACGCCCCCTTCT
TTTAAATGCCCCCCTCGAATAAACGCCCCTCCTAAAAGGAAAATTATTTA
ATAAACGCACCCTATTCCAGCGGTATATAACACTGTGGACACGGGCTAGA
CGGCAAATTGGTAAAATGCCGAACGTTTTGCAACATTTTGAAAATTGTTT
GCCGACGGGAGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGAAAATGTATTT
GAAGGCTGAAACTTTGTATGTTTATCAGAAAAAGGGTGAGGAATTCAAAA
ATCACATTCGCTAATTTTAGTTCTTTCATTTTCATGTAGATTTTTTCATT
TTTTTGTTTCTTTTGCATGGGAATGTCCCAAAAAAAAGTTTTTTTTTCTG
CCGAAATGGATTTTCTTTTCATTTGGGGTTTCTCCTTTCAGAAAAACTTA
TTCTTTACTCATAAGTTTTTGTTCCTCCATTTCCAGAGGTCCCTTGAAAA
TGGGTCCTACCACCTTTTTTGACTCATTTCAACCTTTTCCAAGCTACTTT
TATTCAAAAACAAAAATAAAACAATGCAATGTCTTCTTTTTTCAAAAAAA
GATATATCTTTCGTTATTTTGATAAATATACTAAATAAATATTTTATAAT
ATTTTTATATAATAATATTCTAACCTGTTCTAACACCATCAAAGAATTCT
CCCTCCAAATTTCAGGTCTCTAACTACACTAGAAAAAGAGATATGCAAAA
TTGAAGAAGCATGACTGGAAAAATTTTTTTCTTCTCTTTTTTGACACATT
TTTCGAATTTTTCCAAGCTATTTTCCTAACCTTTTTTTTGACATTTTTAG
TCAAATTTTTGACACTAAAATTTGAATATCTTTACAACCACTTATCCTCT
GGAGGCCTTTGACCCCTCATTTTCTTTCTTTTTCAAAGCTCTACAAGATA
GGATAGGTTTTGAAAAAAAAATTAAAATTTGAAAAATCTTCTGGAGTTGC
TAGGAGGGGCGTTTATTAGAAACTTGTGACTTTAATACTTCAATACCAGT
GTTGATTGGGTTTGAAAAGGAAGATTTAAGTCATTGTAACCAGAGCAGTT
TTCGATGCAATTTTAGTTGTTGAACCAAAGGAACTTTGCACTATAATCCT
GATAAAGAACTAAAACAAAGGGTACACATCGCTACCTTAATTCAAAAGGG
GCCTAAGTCCAGGTACCCCCCAGTTCAAAAGGGGCCTAAGTCCATTTTAA
TGAAATTTGAGATCTTTAGTTTTTCTCAATCTCTGGCTCATTTGCTCTCT
TTTGATGTACATAACAAGTAGTTTTTAAAGTTAAAAAGGTTCAAAACTTC
ATACTGAAGCTCTGATAAAAGTGATGTTTAATTCAAAAGAGGCCTAAGTC
CATCATCTTTTTACAATTAAGGGCCTAAGTCCATCAACTTTTTACAATAA
AAAGGCCTAAGTCCACCAAAATAAGTTTGTTAAGTTTTGAAGAGGCCTAA
GTCCAATTAATTTGCAAATGGGCCTAAGTCCATGCATTCTAAAAAGTTTA
ATTGAGTTTTTCTTTATTTTACTGAGATTGTCTTTTCTCTTTATCTTGAA
TCTAGGTGTAAGTGGTTTTATTTTGGAGTGTCATATGTGCANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTAATTCAAAAAAGGCCTAAGTCC
ACTCTGCAAGATTTACTAAGTTGCACCTGTTACATACAAAAATACATTCC
TTTCAAACGAATGCCTTTTCATTGGAAAAAAAACTTATAGCTATGGCTTT
CAGAAAACATTTACTTCAAAGCTTTACCATCAAAAATGGTTTCAGAATCA
AGGAAAAACTTTAATTTCAATTTTCTCAAAATGACCCAAATGGACTTAGG
CCCCTTTTGAATTAAGGCTCACAGGACTTAGGCCCCTTTTGAATTAAGGT
AGCGACATTTGCTCTAAATATTCTACTTAAGACTAAAATACTTTAATAAA
CGCCCCCTTCTTTTAAACGCCCCCTCAAATAAACGCCCCTCGTAAAATCA
AAAAAATTTAAACACCCCTTTATTCGAAGTAATATGGTGTATATATTTTG
AGCAAGTTTGGCCATTTCAAGGGCAGGGTTTTTAATTTTCCACATTGGCT
AATTCTAGTTCTTTCATTTTCATGTAGTTTTTTTTTAACTTGTTTGCTTC
TCTAACATGGGAATGCCCCTAACATTGAAGTCAAGTTTGAAGATATTCTT
TATTAGAAAAACAGTTAAAAGCAGTCAAAACGCAATTTACCTTACCTCCT
GAGTTTGTCTTTGTTATGCTAAAATATAACAAACCTTTGTCATGTTGTCT
AATTACAAAAACCTCCAATCACTACTTCTCTGCCATCTTGTTTCACTTTA
AATGCGGTGTTTTAAAATTCCTTAGCTACATTATATGTACGGAAAAGGTT
TTCTCCAGGTTTTTTCAATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTCT
TTCTGTTCTAATATATGCAAATCACGTCGAAAAAAGAATATATTTCCGCC
TTTACTTTCACTTTCGCTTTCGTGTTACGCGATTCCAATTGGACGAATAC
TGCTCGCTAACAAATTCTGATTGGCTGTAAGAAAGTGGTCAGAAAGTATC
TACTAGGGGGGAGTGGAGGATATTTTGAAAAATCCCAAATTACTTTCGCA
CCCCCTCCCCTAGCCTGGAAAAAAATTTCGAACCCCTCCTCATAAGGCCC
AATATTTTTTCGCACCCCCCACTAGAAATTTTTTTACGCAAAAAAACAAT
TCATACAGATGCGGTGCAAAGAGTATTATTTGTTTGTATGACAGTTTTTT
ATGTCAAAATTAGGTAAGGGAGATAGTTTAGCCCTGTAAAGTTGAGTATA
GTCCTTTAGGAGATCTACCATTTTGATTGACATTTACACCACTGGATTTT
TTCAGTCGATTTCCATGGTTACGACGGAATTTCTCTGAAGTAAACAAAAG
AAAAAAACCCGTGGTGTAAACGTCAATCAAAATGGTAGATCTCCTATAGG
AATAGTCCAGGGTTAAAATAAGAATCAACGAGTTGAATTTTCTCTGAGTT
TCCCAAAGTTTTGGGAGAAAATTACAGCTTATTTTCCCTGATACATAATC
TCCCTACATTACAGAGGCATTACTCAATTACTCAAAATATCCTGAGGGGC
CACCAAAAGAAAATTTTGAAGATCAGGTACTCGAGACCCTAAAATACAAG
CTATTCTGTTGTTAAAAGGAGTCTGAAAAATAAAATTCTCTGAGTTTGAA
ATTTCCCTATAAACCTATATTTTCAGGTCTTTCAGGGTCTGTCAAAGCTC
TGTGTATATAATTTATAAGATATTAGTAGAGACTAAGGAGGCACAACCAT
GGTTTGCGCCGACGGGAGAAAATGTTGATGTTTTTCACCACCATTTTAGC
TAAAAGACACTTTGTTTTGACAAATTTCTTTCTAAAAAGTACTTTTTCAA
ACCACTCTGATGAGCTGTGAAAGCCACNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAATTTTGGAACCCCCCCTAGAATCCTCCACCCCCCC
CCTAGTAGATACTTTCTGACCACTCCCTAAGTCTTTAGCTTCAGGATTCT
GATTGGATCATTTCCTGCGTCACGGTTGAGTTTTGATTGGTTGAAAGTTT
CTGAGCGTGAATTCTGATTGGATGAATACCTGAAAAGTAAACAATAGAAT
GTAAGTATTTTGCTTATCAAAACCTAAAGATTTCCAGGGGGTTTTATTTA
CTTTGCAAGACAATAATTAAGCCTACAAAACACCAAGAAAAAAACCCAAC
ATAGAACAGGTTTATTTTGTCATGTAGAATATGATAGTGTGAATCTTTTT
GAAATTCTATGTTAGGATTTTTTCTCAATGCCCCGTAACTATGCCCGGGG
TACCCGTTGCTAAGACCTTATGTTAAAAACGAAAGCGATTACGGCAAAAA
GTAGCGATTTTCGTAATACCTCAAATATTGATACTTGACTGTACTGCCTA
ACAAAAGTGATAATTTCTGCTGATGTGGATTTTCTTTTGATTTAGGGTTT
CTCTTTTCAGAAAAACTTATTCTTTACTCATAACGTTTTGCTCCTCCATT
TCCAGAGGTCCCTTGAAAATGGGTCCTACCACCTTTTTTTGACTTATTTC
AACCTTCCCCGAGCTAAACAATGCAATATCTTCTTTAAAAAAAACAGACA
TTGACATTTTTAGTCAAATTTTCAACACTAAAATTTTAATTATGTTCACA
ACCACTTACTGTGAAGTCAGGTAACTTGCATCAGTGGAGGCTAACATGCA
TAGCCCTCAAATGAATGACCTGTCTGGTCATTAAAATACAAAGTTAAATC
AAAACAAAAATTGTAGATTAGAGCTGCGAGTGGAGCTACGTGGTTAATTT
GTTTTGAAATTTTGCTGCTTTTACAATTTCTGAGGGAGGCATTGCAGGTT
TCCGGGGAGTTGTTGAAGATTTTCAGAGAATTCTTTAAGGTGTTCACTCT
CCCAAAAGACTAACAATATTTAGTTTTCCAGCCTCTTTCCCCAAGGTTTC
ACTTTCTAGGGTTGCTTCAAAAAACTTTCAACTTAGTATCTTGTGAAAAT
TTTTACACTGATTTTTTTCTCAAAAGTTTGATAGAGCTTGACTTGGTAGG
ATAATTATTTTCCAGGTGGGAATGCTGGAAATCACTTTTTTCCAATTTTC
TTGAGCTTTTAAATTTTCTCATTCTTTCTCCTATTTTTTATACAACAACC
CCCATATTGTTAATGCACAAAATTTAGCATAATAAAAATTGATATACAGG
TATCATGTATTTAGATCCTGACTTTCAGAAGCAGCCGACGAGCCTGTTTC
CCCAAAGTATCTGTTTCCCCAAAATATCTGTTTCCCTTTTCCAGGAGATA
GCTTTTAGTTGAAAAATTTGGAAGCATCAGAATTTCTAGGAAGAACGTTT
TCCTTACAATCATCTGTTTGCATTACATTGCATTGGAAACAAATGGAATT
TTCTAAGGGAAAACAGATATCAATCACAAACAAGTGTGAGAAAAAGATAA
AAAATTCTAGGAGAGGGAAACAGATGTCCAATACACCTGTTTTAGTAAAG
CACATTCGATATTGGGAAAGTTGTATTCCTTAAAAGCCTGGGAAAACAGA
TCAAAACTTTAATTTTTTAATTGTGGAGACAGATCAAATTTCTAGGGAAG
ACAGTTTGAGATTTTTGAAGAATACAAATTCTAAGAATAACATGGTATCA
GCTCCCCCTTTTTTGGGGGGTAGGGGCTAAGAAATATTTTATCCTTTCCC
TTAAAGAAACCGGGGCTAAGATTGGGGAACCTGGATTTTTTTGTGGGACC
TAGATTTTTTGGGGGGCCTAGATCTTACTATTAAATGAAATATAAAAAGC
AAAAGATGTGTAAACATTAAATATTTTAATACACATAAAGTTTAGTTTTC
ATTTGTCAGTACTGTACTTGCATATATTTTTTATTGACTTTTCTCTACGG
GGGAGCAAGGCAATTTTCTGGGGGAGTTAGAAACCTGGCTGGAGCTATGA
ATAAGATTTTTTAAACTTTTGGCCAAAAGATTGACTTTTCTAGCAGGGAA
GCTATATCTGGGAAACAGATATTAAAAAAATGTCCTCGCTGGATGCTGCA
GCTTCTTATGAATCCAGAACGTCGCGAGCACATTTCAACATGGAAATTTT
TTAATTCTTCTGATTGTTATTTTTTTCGCTTTTAGGATATCAGCATTGAA
CAGATGGGCCGATATATCAGTCCAGTGAACCCAAACATTTATCCTCACCT
TACACTCATCTTATTGGGCATTGGAATTTTCTTTACTGCTTGGTTTTTTG
TGTATCCTTTTCAAATAAGTTTTCCTGATTTTTCTAGCCATAGTAATCCA
TAGTAAAGTTATGGAAATCTAAGCCACAACTTACCATGCATACTTTCTCC
TGCAATTTTTTAAACATTTTGATGAATGACTTCTTGTTTTTTCCTTAACT
ATGGTTATAATTTTTAAACACTAACAGTTATGAAGTTACTTCCACAAAAT
ATTCACGAGATATCTACAAAGAATTATTGGTTGCATTATTCGCTGCTATT
TTCATGGGATTCGGATCGATGTTTTTACTACTCTGGGTTGGAATATATGT
ATGACGTTTCCGTCCGTTTAACAAGACCAACGTGATGCACGCATGTCAAT
TTATAGGGACTATAAAGAATTTGTAGATTTTTTGTTATCGCTTTTTGAAT
ATAATTATGAATACCAATTTTCCATAAAGATTGAATTCAATTTTTTAATC
ATTACCCTTTTCTCAAAAATAGATTTCATAAAAAACAATTATAACCTGTT
CCCAAAAATGACTAATGCCGTTCCAAGCCGTGTGTCAAGTTAGAAAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051864-exon-scaffold_205-1575043694:171443..171715 | TCONS_00051864-exon-scaffold_205-1575043694:171443..171715 | Clytia hemisphaerica | exon |
| TCONS_00051864-exon-scaffold_205-1575043694:164015..164130 | TCONS_00051864-exon-scaffold_205-1575043694:164015..164130 | Clytia hemisphaerica | exon |
| TCONS_00051864-exon-scaffold_205-1575043694:163466..163838 | TCONS_00051864-exon-scaffold_205-1575043694:163466..163838 | Clytia hemisphaerica | exon |
| TCONS_00051864-exon-scaffold_205-1510915933:171443..171715 | TCONS_00051864-exon-scaffold_205-1510915933:171443..171715 | Clytia hemisphaerica | exon |
| TCONS_00051864-exon-scaffold_205-1510915933:164015..164130 | TCONS_00051864-exon-scaffold_205-1510915933:164015..164130 | Clytia hemisphaerica | exon |
| TCONS_00051864-exon-scaffold_205-1510915933:163466..163838 | TCONS_00051864-exon-scaffold_205-1510915933:163466..163838 | Clytia hemisphaerica | exon |
| TCONS_00051864-exon-scaffold_205-1491911889:171443..171715 | TCONS_00051864-exon-scaffold_205-1491911889:171443..171715 | Clytia hemisphaerica | exon |
| TCONS_00051864-exon-scaffold_205-1491911889:164015..164130 | TCONS_00051864-exon-scaffold_205-1491911889:164015..164130 | Clytia hemisphaerica | exon |
| TCONS_00051864-exon-scaffold_205-1491911889:163466..163838 | TCONS_00051864-exon-scaffold_205-1491911889:163466..163838 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_205 | supercontig | scaffold_205:163466..171715 - |
Blast
BLAST of TCONS_00051864 vs. Swiss-Prot (Human)
Match: TM258 (Transmembrane protein 258 OS=Homo sapiens GN=TMEM258 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 7.547e-30 Identity = 58/79 (73.42%), Postives = 71/79 (89.87%), Query Frame = 1
Query: 277 ISIEQMGRYISPVNPNIYPHXXXXXXXXXXXXXAWFFVYEVTSTKYSRDIYKELLVALFAAIFMGFGSMFLLLWVGIYV 513
+ +E M RY SPVNP ++PHLT++LL IG+FFTAWFFVYEVTSTKY+RDIYKELL++L A++FMGFG +FLLLWVGIYV
Sbjct: 1 MELEAMSRYTSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLFMGFGVLFLLLWVGIYV 79
The following BLAST results are available for this feature:
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