TCONS_00051866 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051866
Unique NameTCONS_00051866
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051866 ID=TCONS_00051866|Name=TCONS_00051866|organism=Clytia hemisphaerica|type=transcript|length=801bp
ATGAAAGAGAATTACACAGACaggaaaaaaattcgaaaactgTTTTTGTT
GAGTTAAATCGGAAAATGTTTAAGTTACTAGTTTCATCGCTCGTTTTGCT
GGTCATTGCAACTTTTGCATCTTCAGCCCCTGTTAAAGATAACGACTACA
TCCCCTGTTCGGTAGAATGCTACGCGAGTTACCAAGAGCAATGTCGACAG
TCGTCCAAAACACAGAATGATCATTATTTTTGCACGTCGAAATTCAATCA
ATGCATCAAGCAGAAGAAATCGTGTCATCGTCTGTTTTTATTCAactctt
tgaaaaagaaattgcagAGATTTCAGAAAGCAATCAATTTGGTGAAATTA
ATGTAATACTTTTCGTCATTGGTTGAGCTTTATCAACGGAAAGAATAAAG
CGAAGACCGTCAAGAAAGATTTAACGGCTCAGTAAGTCGTACTTCAAACT
TTActcatctttttaaaaaacagCGAAGGTCtctttctgacgtttttcct
atATAGAGAGACTTTACTTTGTAAGGCTAAAGAGTATATGACCGGAATCT
AAAAAGAATTATTGGTCTATATCTTCGAGAATTGATTTTAGCATAGGTTT
TCCGAAATTTTGTaacgattaaaaaattttttgactaaGTGGGTTCAAGT
TCAGAATCCTGATAAACAAAGATtatattaaaagatttttgaaagtaata
ttttatattatattggATGTGTAAATTTTTGCttgtataaaaaaataaat
tttatttagaaaattttataaaaatattttaataaaattatgGTATACGC
T
Run BLAST on NCBI

protein sequence of TCONS_00051866-protein

>TCONS_00051866-protein ID=TCONS_00051866-protein|Name=TCONS_00051866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
ERELHRQEKNSKTVFVELNRKMFKLLVSSLVLLVIATFASSAPVKDNDYI
PCSVECYASYQEQCRQSSKTQNDHYFCTSKFNQCIKQKKSCHRLFLFNSL
KKKLQRFQKAINLVKLM
Run BLAST on NCBI

transcript from alignment at scaffold_205:195717..199208-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051866 ID=TCONS_00051866|Name=TCONS_00051866|organism=Clytia hemisphaerica|type=transcript|length=3492bp|location=Sequence derived from alignment at scaffold_205:195717..199208- (Clytia hemisphaerica)
ATGAAAGAGAATTACACAGACAGGAAAAAAATTCGAAAACTGTTTTTGTT
GAGTTAAATCGGAAAATGTTTAAGTTACTAGGTGAGTGTTTTAAAATGTC
TCTGGTTTAGACTGGGTTTAGACTGATTCTCTGATTGTCTTTGCTCTAGC
ATCAGAAAGTTTTTTAATTAGAATATTTCGAGTATCGACTTCAGTTCGCA
TTCGTCACTTTTTCTTTTGGATATAATGTTTAGCTCAGGTTTAGACGGCC
CACTTTTCGGCCTGTCTATTATACCGGGTGCACCAAAAAAAAGTATACAA
CTTTGTTGAGATATTGTGAGCTTCAGGATTTAATTTTTTTGTTCATTCTT
TTTTTATTGTATGGAGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCCCCCCCC
CCCCCGTGACATAATATTTTGTTTAAGTCAAAAGTTATCAGAAAAAGCAT
CGTTTACTTTACGACTCTGCAGGTAGCTATTTTTCTCGCTTCGCTCGGTT
TAAATGACAATTTTTCAGGAAAAAGTGGGAAGATCGCAAAGAATAGTGCA
ACTCTTTGTTTTTATCAGATCGAGAAAAAATAAGACAATTCTAAGTTGCT
TTTTTAANCCGGTTTTAAGAAAATCGGATTGCTCAGCAGGTGGGGGAGAG
GAAAAGGGTTATACAAGAAGATTTTTGGTTGTGCTTCAGGGGTATATAAG
GTGCGGTTGTAGTTTAGTTGAGTCAGTTATTCAATGAAAGAGAATTACAC
AGACAGGAAAAAAATTCGAAAACTATTTTTGTTGAGTCAAATCGGAAAAT
GTTTAAGTTACTAGGTGAGTGTTTTAAAATGTCTCTGGTTTAGACTGGGT
TTAGACTGATTCTCTGATTGTCTTTGCTCTAGCATCAGAAAGTTTTTTAA
GTAGAATATTTCGAGTATCGACTTCAGTTCGCATTCGTCACTTTTTCTTT
TGGATATAATGTTTAGCTCAGGTTTAGACGGCCCACTTTTCGGCCTGTCT
ATNTTCGATTTTTATGTTTTGATTTACTTTTGAAATATTCTTTTCTATGA
AATGAAATTGTTTTGTTTTGAAAAGAATTCGAATGTCATTAATAAGTACG
ATCGTTAAATACATTCGAAAACATTTAAAACAAAAGAAGAGAGAAAAAGG
CAAGTCTCGGCAGTAATTAANGTACCGGGTGCACCAAAAAAAAGTATACA
ACTTTGTTGAGATATTGTGAGCTTCAGGATTTAATTTTTTTGTTCATTCT
TTTTTTATTGTATGGAGGATGCTCTAACTTGAATTTTGAGCTATTATACA
TTAAATTTGAAAACGTAGTTCGAAAATTATTTTAAAAAAACTGACTTTTT
TTTAACGTCGAAATTTCAAAAAACCATGAAAAACAGCGATCAAACTTTTT
TTCTAGACACTTACCTTGTTTACACATAAAAATGCCAAAAATTANGACTA
AAAGTCATAATTTTAAAACACAAACAAAGCGAAAGCGAAAACGAAAGTGA
CACACAGACACACAAAGCACCGCTATTAATATATAGAAGGNACAACTGTG
TTCATCAAAACTGGTCACAGAATTTAAGAATATGGTAAAACAAGCTATTC
CCATGTAAGATAATATTTTTGGAAAAGCTGAAATTCTTTTTGGAAATCTC
CAAGGTTTTGATGTTATGCTATGTGAGAAAATTATTGAAAAAATAGATCA
TCATTCCTCGACTAGTTGTTCAAAGAACTTGGGTCTGCATTGAGTTTGAT
GGTGTTGGAAATATTCATGACGTGCAAATAAGATGGGCAAACTGTTGGCA
AAATCTAAGATAAGAGAAAAAAGAATAAAAGAAACAATGAAATTGTTTTT
TTGTCATTTTGTCTTATTTATAGCGTGATTGCTGTTTTTAATGATTTTTT
GAAATTTCGACATGGAAAAAAAGTTAGTTTTTTGAATAAATAACCTCTGA
ACTGCTTTTTCAAATTTAATGTATAATAGCTCAAAATTCAAGTTAGAGCA
CCCTCTATACAATAAAAAAAGAATGAACAAAAAATTTAAATCCTGAAGCT
TACAATATCTCGACAAACCTGTATACTTTTTTTGGTGCACCAAAATTTGT
GCATTAAAGTGGACGAAAAGTGTAAATCAAAGCTTATTTCGTTTAATACA
TACCATTTACCTGAAACATGCACTGTCTAAAATTAATTATAAAAATAATT
TTCTAATTCCTCCTCTTTACAGTTTCATCGCTCGTTTTGCTGGTCATTGC
AACTTTTGCATCTTCAGCCCCTGTTAAAGATAACGACTACATCCCCTGTT
CGGTAGAATGCTACGCGAGTTACCAAGAGCAATGTCGACAGTCGTCCAAA
ACACAGAATGATCATTATTTTTGCACGTCGAAATTCAATCAATGCATCAA
GCAGAAGAAATCGTGTCATCGTCTGTTTTTATTCAACTCTTTGAAAAAGA
AATTGCAGAGATTTCAGAAAGCAATCAATTTGGTGAAATTAATGTAATAC
TTTTCGTCATTGGTTGAGCTTTATCAACGGAAAGAATAAAGCGAAGACCG
TCAAGAAAGATTTAACGGCTCAGTAAGTCGTACTTCAAACTTTACTCATC
TTTTTAAAAAACAGCGAAGGTCTCTTTCTGACGTTTTTCCTATATAGAGA
GACTTTACTTTGTAAGGCTAAAGAGTATATGACCGGAATCTAAAAAGAAT
TATTGGTCTATATCTTCGAGAATTGATTTTAGCATAGGTTTTCCGAAATT
TTGTAACGATTAAAAAATTTTTTGACTAAGTGGGTTCAAGTTCAGAATCC
TGATAAACAAAGATTATATTAAAAGATTTTTGAAAGTAATATTTTATATT
ATATTGGATGTGTAAATTTTTGCTTGTATAAAAAAATAAATTTTATTTAG
AAAATTTTATAAAAATATTTTAATAAAATTATGGTATACGCT

Coding sequence (CDS) from alignment at scaffold_205:195717..199208-

>TCONS_00051866 ID=TCONS_00051866|Name=TCONS_00051866|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_205:195717..199208- (Clytia hemisphaerica)
TTTCATCGCTCGTTTTGCTGGTCATTGCAACTTTTGCATCTTCAGCCCCT
GTTAAAGATAACGACTACATCCCCTGTTCGGTAGAATGCTACGCGAGTTA
CCAAGAGCAATGTCGACAGTCGTCCAAAACACAGAATGATCATTATTTTT
GCACGTCGAAATTCAATCAATGCATCAAGCAGAAGAAATCGTGTCATCGT
CTGTTTTTATTCAACTCTTTGAAAAAGAAATTGCAGAGATTTCAGAAAGC
AATCAATTTGGTGAAATTAATGTAAGAAAGAGAATTACACAGACAGGAAA
AAAATTCGAAAACTGTTTTTGTTGAGTTAAATCGGAAAATGTTTAAGTTA
CTAGTTTCATCGCTCGTTTTGCTGGTCATTGCAACTTTTGCATCTTCAGC
CCCTGTTAAAGATAACGACTACATCCCCTGTTCGGTAGAATGCTACGCGA
GTTACCAAGAGCAATGTCGACAGTCGTCCAAAACACAGAATGATCATTAT
TTTTGCACGTCGAAATTCAATCAATGCATCAAGCAGAAGAAATCGTGTCA
TCGTCTGTTTTTATTCAACTCTTTGAAAAAGAAATTGCAGAGATTTCAGA
AAGCAATCAATTTGGTGAAATTAATGTAAGAAAGAGAATTACACAGACAG
GAAAAAAATTCGAAAACTGTTTTTGTTGAGTTAAATCGGAAAATGTTTAA
GTTACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032823XLOC_032823Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051866-proteinTCONS_00051866-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051866-exon-scaffold_205-1575043694:199128..199208TCONS_00051866-exon-scaffold_205-1575043694:199128..199208Clytia hemisphaericaexon
TCONS_00051866-exon-scaffold_205-1575043694:195717..196436TCONS_00051866-exon-scaffold_205-1575043694:195717..196436Clytia hemisphaericaexon
TCONS_00051866-exon-scaffold_205-1510915933:199128..199208TCONS_00051866-exon-scaffold_205-1510915933:199128..199208Clytia hemisphaericaexon
TCONS_00051866-exon-scaffold_205-1510915933:195717..196436TCONS_00051866-exon-scaffold_205-1510915933:195717..196436Clytia hemisphaericaexon
TCONS_00051866-exon-scaffold_205-1491911889:199128..199208TCONS_00051866-exon-scaffold_205-1491911889:199128..199208Clytia hemisphaericaexon
TCONS_00051866-exon-scaffold_205-1491911889:195717..196436TCONS_00051866-exon-scaffold_205-1491911889:195717..196436Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:195717..199208 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.121809	0	0	0	0	0	2.36614	2.64344	0	0	0	0	23.6282	20.5906	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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