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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051872 ID=TCONS_00051872|Name=TCONS_00051872|organism=Clytia hemisphaerica|type=transcript|length=3559bpRun BLAST on NCBI protein sequence of TCONS_00051872-protein >TCONS_00051872-protein ID=TCONS_00051872-protein|Name=TCONS_00051872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp MPPKSNSLAFLYKPLGWFPVIIINAIAVWSYFAYVVILCIDNVESSTEKARun BLAST on NCBI transcript from alignment at scaffold_205:244079..255302- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051872 ID=TCONS_00051872|Name=TCONS_00051872|organism=Clytia hemisphaerica|type=transcript|length=11224bp|location=Sequence derived from alignment at scaffold_205:244079..255302- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_205:244079..255302- >TCONS_00051872 ID=TCONS_00051872|Name=TCONS_00051872|organism=Clytia hemisphaerica|type=CDS|length=8970bp|location=Sequence derived from alignment at scaffold_205:244079..255302- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00051872 vs. Swiss-Prot (Human)
Match: ZDHC2 (Palmitoyltransferase ZDHHC2 OS=Homo sapiens GN=ZDHHC2 PE=1 SV=1) HSP 1 Score: 317.005 bits (811), Expect = 4.029e-97 Identity = 150/307 (48.86%), Postives = 206/307 (67.10%), Query Frame = 3
Query: 30 PKSNSLAFLYKPLGWFPVIIINAIAVWSYFAYVVILCIDNVESSTEKAIMLILYHPFFVMFMIAYWQAIMGRPGYMPKSFMLTYEN---FERYENCDNPQEVLKDIAKDLPVVTYANNDTVRFCDTCQGIKPDRCHHCSMCQQCVLKMDHHCPWVNNCVGWGNYKYFVLFLFYAILYTMYVALSSLKYFIKFWSGGHHMKVSSNLHVLFLFFVAAMFSISLWSLFGFHIYLLLSNRTTLESFRGPIFQHGPDKNGFNLGRSNNFRQVFGNNKWKWFLPIFTTPGEGVEFP---VRMSTSQQV*PFGI 932
P S++ + L W PV+ I + WSY+AY + LCI ++E++ E+ + L+ YH F MF+ +YW+ I P K F L+Y ER + QEVL+ AKDLP+ T + +R+CD CQ IKPDRCHHCS+C +C+LKMDHHCPWVNNCVG+ NYK+F+LFL Y++LY +++A + L+YFIKFW+ G + H++FLFF AAMFS+SL SLFG+H +L+ N++TLE+FR P+F+HG DKNGF+LG S N RQVFG+ K W LPIF++ G+G FP V Q P G+
Sbjct: 6 PGSSARRRCRRVLYWIPVVFITLLLGWSYYAYAIQLCIVSMENTGEQVVCLMAYHLLFAMFVWSYWKTIFTLPMNPSKEFHLSYAEKDLLEREPRGEAHQEVLRRAAKDLPIYTRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAYSLLYCLFIAATDLQYFIKFWTNGLP-DTQAKFHIMFLFFAAAMFSVSLSSLFGYHCWLVSKNKSTLEAFRSPVFRHGTDKNGFSLGFSKNMRQVFGDEKKYWLLPIFSSLGDGCSFPTCLVNQDPEQASTPAGL 311 The following BLAST results are available for this feature:
BLAST of TCONS_00051872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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