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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051873 ID=TCONS_00051873|Name=TCONS_00051873|organism=Clytia hemisphaerica|type=transcript|length=1733bp
CAGTTTCAAAGACAACATTAAAGATACAACTTTATACACTATCAAAGTAT
CCTGTATCATAATCACCAACAACGAAAAAATGTCAAGAAGAGgcaatttc
atcattttcaaagaagatGAAATATATCGTCTCATTATTGCTCTCATTGT
ATTATTCTTAAACCTGGCTGAagtttttttcatcatttataAATGGActa
tcaaaaagaaaagaaaaacaatctaCGAGACATATTTGTTAAGTTTATCA
TGTGCTGACGTAACGTTTTCATTGGCTAATATGATTTTTTCGACCATGAT
ACTAGCAGATTCTGGGAATCTCATAATCGCGACTATTGGTTACGTCCTAT
CACTATATTTGTCAGTATCTCATATCTCAGCCATAACTGTGGATAGACTC
ATCGCCATAATATTCCCATTGACTCACAAACTGAAAGTTCGAGTCAAACA
TGCTCGAATGGTAATCTTAACTTTATGGCTTGTTTGCATTGGGATCGGAG
TATTGCTCTATTTCGAATACAAGAATAACACATTCGAAAAGTACACATTA
ATTAGTATCAAGTTTATCAAATTCATAATATACGTTTCAGACATTATATT
CATTGTTGCTTACATTATTTTATGTTATATTCTACTTCGACAAGAGAACA
AAGCATTGTCATCAACACGAGGTGCAAACacagagaaaaacattttggtA
CTTTGTCTTTTAACATCTCTGGCGTTCGTTTGCTGCACGTTACCAGTTGC
TATTCACTTTACATTACATTCTCAATGGCCAGCCAGACTGACTTATTTAC
TGGTCGCAAATTCAGGACTGAATTCAATTTTGTATTTCTTTCATGGACGA
TTTGTTCATATTTATCGGAAACGTGTTAAAACACAACGGATGCAGAAAAC
AACATCGTCGTCTACTGCTGAAtaaatatttccaattttgcCATATCTGC
TGATAGTGATCCAGTTATTGACAAATCTGTTCCTGACAACAGTGTGCCAG
AAAAGGACTGTTTGAGCCTTGCAGGCCACAAAACGTTGTGTCggcgtcca
tctaacgttacggactttgtaaatattatatgaacgttaaaacaacttTG
TGTGTCAGCTATGAGTCATTCAGGAGAGTGAATTGTCGATGGAAACCATG
GTTAAGCTCGCCTTCCTAAGTCAACATCTGGTCCCCTGATTAGGAGCAAT
GTTAGTCACGCTAGTTGAAATAAGAAGAGAGAATGACGAAGGACGAAGGA
TGATAGTCATCATAAAATATCACAGAAGAGCGCTCCACCTTACACGTAAT
CTTATTATTTGCTATGTGCAATAATTATCATCGAACTCAAAACCAAGAAA
TATTATGTCTGTTTATTTCATTACCCTTTTCTGTCGTGCAAATCATCATA
ATAGACTTGAACCAAAAACAGCATTGCTGTTGTACACACGAAACTAGCAA
GAAGAGAGTGGTAGAACGGTAGAAAACACAATATATAAACAAGAGACCTC
TTGATCATTCCAAGATCAAGATGAGAAGTCATGACTCAAAATAATTCAGA
AGATGGCTGGCTTCTGCTCTTGTTATTACTGTTGTTCTGCGAATTCAATG
AAGGAAAAGTTATAAGACAACGAAACAGAAGCACAGTGGAAGACAATTTG
CGCACTGGCAACGGCGTAGCAAAACAACAGATTCCTTCGAAGTCTCAAGA
TGTCAGTAGAAACACTATGTTTGCAGCAGAGAA Run BLAST on NCBI protein sequence of TCONS_00051873-protein >TCONS_00051873-protein ID=TCONS_00051873-protein|Name=TCONS_00051873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
SFKDNIKDTTLYTIKVSCIIITNNEKMSRRGNFIIFKEDEIYRLIIALIV
LFLNLAEVFFIIYKWTIKKKRKTIYETYLLSLSCADVTFSLANMIFSTMI
LADSGNLIIATIGYVLSLYLSVSHISAITVDRLIAIIFPLTHKLKVRVKH
ARMVILTLWLVCIGIGVLLYFEYKNNTFEKYTLISIKFIKFIIYVSDIIF
IVAYIILCYILLRQENKALSSTRGANTEKNILVLCLLTSLAFVCCTLPVA
IHFTLHSQWPARLTYLLVANSGLNSILYFFHGRFVHIYRKRVKTQRMQKT
TSSSTAE Run BLAST on NCBI transcript from alignment at scaffold_205:1..1733 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051873 ID=TCONS_00051873|Name=TCONS_00051873|organism=Clytia hemisphaerica|type=transcript|length=1733bp|location=Sequence derived from alignment at scaffold_205:1..1733 (Clytia hemisphaerica)
TTCTCTGCTGCAAACATAGTGTTTCTACTGACATCTTGAGACTTCGAAGG
AATCTGTTGTTTTGCTACGCCGTTGCCAGTGCGCAAATTGTCTTCCACTG
TGCTTCTGTTTCGTTGTCTTATAACTTTTCCTTCATTGAATTCGCAGAAC
AACAGTAATAACAAGAGCAGAAGCCAGCCATCTTCTGAATTATTTTGAGT
CATGACTTCTCATCTTGATCTTGGAATGATCAAGAGGTCTCTTGTTTATA
TATTGTGTTTTCTACCGTTCTACCACTCTCTTCTTGCTAGTTTCGTGTGT
ACAACAGCAATGCTGTTTTTGGTTCAAGTCTATTATGATGATTTGCACGA
CAGAAAAGGGTAATGAAATAAACAGACATAATATTTCTTGGTTTTGAGTT
CGATGATAATTATTGCACATAGCAAATAATAAGATTACGTGTAAGGTGGA
GCGCTCTTCTGTGATATTTTATGATGACTATCATCCTTCGTCCTTCGTCA
TTCTCTCTTCTTATTTCAACTAGCGTGACTAACATTGCTCCTAATCAGGG
GACCAGATGTTGACTTAGGAAGGCGAGCTTAACCATGGTTTCCATCGACA
ATTCACTCTCCTGAATGACTCATAGCTGACACACAaagttgttttaacgt
tcatataatatttacaaagtccgtaacgttagatggacgccGACACAACG
TTTTGTGGCCTGCAAGGCTCAAACAGTCCTTTTCTGGCACACTGTTGTCA
GGAACAGATTTGTCAATAACTGGATCACTATCAGCAGATATGgcaaaatt
ggaaatatttaTTCAGCAGTAGACGACGATGTTGTTTTCTGCATCCGTTG
TGTTTTAACACGTTTCCGATAAATATGAACAAATCGTCCATGAAAGAAAT
ACAAAATTGAATTCAGTCCTGAATTTGCGACCAGTAAATAAGTCAGTCTG
GCTGGCCATTGAGAATGTAATGTAAAGTGAATAGCAACTGGTAACGTGCA
GCAAACGAACGCCAGAGATGTTAAAAGACAAAGTaccaaaatgtttttct
ctgtGTTTGCACCTCGTGTTGATGACAATGCTTTGTTCTCTTGTCGAAGT
AGAATATAACATAAAATAATGTAAGCAACAATGAATATAATGTCTGAAAC
GTATATTATGAATTTGATAAACTTGATACTAATTAATGTGTACTTTTCGA
ATGTGTTATTCTTGTATTCGAAATAGAGCAATACTCCGATCCCAATGCAA
ACAAGCCATAAAGTTAAGATTACCATTCGAGCATGTTTGACTCGAACTTT
CAGTTTGTGAGTCAATGGGAATATTATGGCGATGAGTCTATCCACAGTTA
TGGCTGAGATATGAGATACTGACAAATATAGTGATAGGACGTAACCAATA
GTCGCGATTATGAGATTCCCAGAATCTGCTAGTATCATGGTCGAAAAAAT
CATATTAGCCAATGAAAACGTTACGTCAGCACATGATAAACTTAACAAAT
ATGTCTCGtagattgtttttcttttctttttgatagTCCATTtataaatg
atgaaaaaaactTCAGCCAGGTTTAAGAATAATACAATGAGAGCAATAAT
GAGACGATATATTTCatcttctttgaaaatgatgaaattgcCTCTTCTTG
ACATTTTTTCGTTGTTGGTGATTATGATACAGGATACTTTGATAGTGTAT
AAAGTTGTATCTTTAATGTTGTCTTTGAAACTG Coding sequence (CDS) from alignment at scaffold_205:1..1733 >TCONS_00051873 ID=TCONS_00051873|Name=TCONS_00051873|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_205:1..1733 (Clytia hemisphaerica)
ttaTTCAGCAGTAGACGACGATGTTGTTTTCTGCATCCGTTGTGTTTTAA
CACGTTTCCGATAAATATGAACAAATCGTCCATGAAAGAAATACAAAATT
GAATTCAGTCCTGAATTTGCGACCAGTAAATAAGTCAGTCTGGCTGGCCA
TTGAGAATGTAATGTAAAGTGAATAGCAACTGGTAACGTGCAGCAAACGA
ACGCCAGAGATGTTAAAAGACAAAGTaccaaaatgtttttctctgtGTTT
GCACCTCGTGTTGATGACAATGCTTTGTTCTCTTGTCGAAGTAGAATATA
ACATAAAATAATGTAAGCAACAATGAATATAATGTCTGAAACGTATATTA
TGAATTTGATAAACTTGATACTAATTAATGTGTACTTTTCGAATGTGTTA
TTCTTGTATTCGAAATAGAGCAATACTCCGATCCCAATGCAAACAAGCCA
TAAAGTTAAGATTACCATTCGAGCATGTTTGACTCGAACTTTCAGTTTGT
GAGTCAATGGGAATATTATGGCGATGAGTCTATCCACAGTTATGGCTGAG
ATATGAGATACTGACAAATATAGTGATAGGACGTAACCAATAGTCGCGAT
TATGAGATTCCCAGAATCTGCTAGTATCATGGTCGAAAAAATCATATTAG
CCAATGAAAACGTTACGTCAGCACATGATAAACTTAACAAATATGTCTCG
tagattgtttttcttttctttttgatagTCCATTtataaatgatgaaaaa
aactTCAGCCAGGTTTAAGAATAATACAATGAGAGCAATAATGAGACGAT
ATATTTCatcttctttgaaaatgatgaaattgcCTCTTCTTGACATTTTT
TCGTTGTTGGTGATTATGATACAGGATACTTTGATAGTGTATAAAGTTGT
ATCTTTAATGTTGTCTTTGAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051873-exon-scaffold_205-1491911889:1..1733 | TCONS_00051873-exon-scaffold_205-1491911889:1..1733 | Clytia hemisphaerica | exon |
| TCONS_00051873-exon-scaffold_205-1510915933:1..1733 | TCONS_00051873-exon-scaffold_205-1510915933:1..1733 | Clytia hemisphaerica | exon |
| TCONS_00051873-exon-scaffold_205-1575043694:1..1733 | TCONS_00051873-exon-scaffold_205-1575043694:1..1733 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_205 | supercontig | scaffold_205:1..1733 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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