TCONS_00051878 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051878
Unique NameTCONS_00051878
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length760

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051878 ID=TCONS_00051878|Name=TCONS_00051878|organism=Clytia hemisphaerica|type=transcript|length=760bp
cttctttttgtcagaaaataaactgcaaaatattgcaagcaattttcatt
tttcaagctaTAAAAAGAAGTAAGTGACTTATatacttccttttgtcaga
aaataaaatgaaactttagtccaaaaaaaatgataaagaatAGTCGTTTA
TTAGAAATCAACTACTGGAAAACACAAGCCCGACTCTTAGGagttgattt
ttgcaaaaatatgaattttcaaaaattgatggttacttccttttgtcaga
tcAAATAGAATGGTTTGATATCTCCTTCGGGGAATGGGTCCTACAAAGTA
GAaattcctcctttttcaagtCAGAGCGCTTATAGCGCTGTCAAGACTTT
GCTGGTTCTGTGCATGCGAGACACAGATACCATGATGCATAGTGATGACC
TTTGAACCATAGTTGGGAGAGAGCAGCTCGCCGCAGATGCAGAACATGAT
GAGTGACACctcacaccacaatgtctggcatatcacccacactcttgtat
cagaggtgatggtatgggttgacccaaACAAGATGTGTCCACCGTAGTAC
CacagtgggaatcgaactcAGACCTCAGGGACGGGAGTCAATAGCAATGA
CCACCACaccttttgaaaattaaaaaaaatgaatgcttcaaagcaaaaat
atatttatcaaaataccTTAATGCCCTTAATTTTTGCGCGCCTATCATTT
TCGAGCCCTTTAATTTTTGTGCCTTTAATTTTTGCGCACCCCCTAATAAC
GACCTTTCGC
Run BLAST on NCBI

transcript from alignment at scaffold_205:55125..55884

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051878 ID=TCONS_00051878|Name=TCONS_00051878|organism=Clytia hemisphaerica|type=transcript|length=760bp|location=Sequence derived from alignment at scaffold_205:55125..55884 (Clytia hemisphaerica)
GCGAAAGGTCGTTATTAGGGGGTGCGCAAAAATTAAAGGCACAAAAATTA
AAGGGCTCGAAAATGATAGGCGCGCAAAAATTAAGGGCATTAAggtattt
tgataaatatatttttgctttgaagcattcattttttttaattttcaaaa
ggtGTGGTGGTCATTGCTATTGACTCCCGTCCCTGAGGTCTgagttcgat
tcccactgtGGTACTACGGTGGACACATCTTGTttgggtcaacccatacc
atcacctctgatacaagagtgtgggtgatatgccagacattgtggtgtga
gGTGTCACTCATCATGTTCTGCATCTGCGGCGAGCTGCTCTCTCCCAACT
ATGGTTCAAAGGTCATCACTATGCATCATGGTATCTGTGTCTCGCATGCA
CAGAACCAGCAAAGTCTTGACAGCGCTATAAGCGCTCTGacttgaaaaag
gaggaattTCTACTTTGTAGGACCCATTCCCCGAAGGAGATATCAAACCA
TTCTATTTgatctgacaaaaggaagtaaccatcaatttttgaaaattcat
atttttgcaaaaatcaactCCTAAGAGTCGGGCTTGTGTTTTCCAGTAGT
TGATTTCTAATAAACGACTattctttatcattttttttggactaaagttt
cattttattttctgacaaaaggaagtatATAAGTCACTTACTTCTTTTTA
tagcttgaaaaatgaaaattgcttgcaatattttgcagtttattttctga
caaaaagaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032830XLOC_032830Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051878-exon-scaffold_205-1491911889:55125..55884TCONS_00051878-exon-scaffold_205-1491911889:55125..55884Clytia hemisphaericaexon
TCONS_00051878-exon-scaffold_205-1510915933:55125..55884TCONS_00051878-exon-scaffold_205-1510915933:55125..55884Clytia hemisphaericaexon
TCONS_00051878-exon-scaffold_205-1575043694:55125..55884TCONS_00051878-exon-scaffold_205-1575043694:55125..55884Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:55125..55884 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.440521	0.378055	0.452742	1.10757	0.811503	0.84256	0.683407	0.799586	0.679653	0.791253	1.01945	1.54885	0.931058	0.765939	0.68098	0.61415	1.02445	1.56306	1.16721	1.36875	1.65204	1.36518	0.486993	0.936693	0.282088	0.813843	0.993962	1.22089	1.16617	1.10364
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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