TCONS_00051892 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051892
Unique NameTCONS_00051892
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051892 ID=TCONS_00051892|Name=TCONS_00051892|organism=Clytia hemisphaerica|type=transcript|length=561bp
caagccaaaaaaatattaaaatgaatccaaatataataaatttattaaaa
tctatctgtgcaaatatttcaaataagaaatctttaaaaacctgtaacca
atttaatatcataaAGGGGAATAAAGTAATAAAGCTAATGTCATCTTAAT
ATTTATGCTCTTTTCAGTTGAACAAAATATGAAGCCATAAAAATTCTGTC
TTAGTTTATTCCTTCTAAGATGAAAGAGAAAGCTTATGATTCCTCGTCAA
ATTAATCTAACTGCTCCATTATTTAGAATAACTTGGTGGGATTCAAAACT
CAAATCATAGCAAGAAGGGAAACAGTTTATTCCCTACGTATAGGGAATAA
ACTGTATATTTGTCTATAGGTTCGATCGAAGCTTCTTATGCATAGGATCA
CATAAGAGTACGATTTCTGCTTAAGAAGGCTGAACGTTGATGACAGAATA
AAGATTGAGTTAAAAAATAATTGTATAATACCAAACTAAGAAAGAATTGG
GTGTTtcacagaaaaatattttgacgaaTGAGGAAAAGTTCTCTTCCAAA
TTAAGTTTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_205:383688..384248

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051892 ID=TCONS_00051892|Name=TCONS_00051892|organism=Clytia hemisphaerica|type=transcript|length=561bp|location=Sequence derived from alignment at scaffold_205:383688..384248 (Clytia hemisphaerica)
CAAAAACTTAATTTGGAAGAGAACTTTTCCTCAttcgtcaaaatattttt
ctgtgaAACACCCAATTCTTTCTTAGTTTGGTATTATACAATTATTTTTT
AACTCAATCTTTATTCTGTCATCAACGTTCAGCCTTCTTAAGCAGAAATC
GTACTCTTATGTGATCCTATGCATAAGAAGCTTCGATCGAACCTATAGAC
AAATATACAGTTTATTCCCTATACGTAGGGAATAAACTGTTTCCCTTCTT
GCTATGATTTGAGTTTTGAATCCCACCAAGTTATTCTAAATAATGGAGCA
GTTAGATTAATTTGACGAGGAATCATAAGCTTTCTCTTTCATCTTAGAAG
GAATAAACTAAGACAGAATTTTTATGGCTTCATATTTTGTTCAACTGAAA
AGAGCATAAATATTAAGATGACATTAGCTTTATTACTTTATTCCCCTtta
tgatattaaattggttacaggtttttaaagatttcttatttgaaatattt
gcacagatagattttaataaatttattatatttggattcattttaatatt
tttttggcttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032844XLOC_032844Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051892-exon-scaffold_205-1491911889:383688..384248TCONS_00051892-exon-scaffold_205-1491911889:383688..384248Clytia hemisphaericaexon
TCONS_00051892-exon-scaffold_205-1510915933:383688..384248TCONS_00051892-exon-scaffold_205-1510915933:383688..384248Clytia hemisphaericaexon
TCONS_00051892-exon-scaffold_205-1575043694:383688..384248TCONS_00051892-exon-scaffold_205-1575043694:383688..384248Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_205supercontigscaffold_205:383688..384248 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.503945	0.393141	1.02707	0.893177	5.57271	4.40363	3.49867	3.1541	1.52879	1.99886	2.04226	1.94662	2.14501	1.67071	0.972933	0.491344	1.05927	0.930613	1.28569	1.23327	3.02091	2.70932	0.693376	1.47089	0.973915	1.83497	4.42246	4.71977	4.25098	3.64722
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051892 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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