TCONS_00051894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051894
Unique NameTCONS_00051894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051894 ID=TCONS_00051894|Name=TCONS_00051894|organism=Clytia hemisphaerica|type=transcript|length=463bp
AAAGAGGAGAACTCAATATAAAATTCAATATGATCATTTTAAATAGTTGC
GTTTCTTCATTATGTTTTAGATCGCTTTCCGAAACTAAATTGTTTCAGGT
GTACAGTGTGTGAAAGTAGCGAAACAGTGAAGAAAGTTGGGTACGAGTTT
GTTGTTCTCATTACTTTGGAAGGTAGATTTGATCTTCAAAGGTACACAGT
TCTTTGTAAAGATTGTTCAGGAGAAGTAGACCCTTTCACGCTTCGAATCC
TTTTAAAATCTGGTTATTGGCCGGGCAGTCCAAACAGTGTGAATTATTTC
ATATCGGAAAAAGTCTTTCGCTTGTGAGATAAATTCCGCAAATACATGCC
GGGAAGCTCAGAGACGTCCTTCTTAAAAGCATTGTATACCATTTCGAAAG
ATAATGACCGAGTAAGTTTATATTCATTTTGTCAAGGTAAATTTTAAATA
CCTAGAGTTTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_206:4130..4803+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051894 ID=TCONS_00051894|Name=TCONS_00051894|organism=Clytia hemisphaerica|type=transcript|length=674bp|location=Sequence derived from alignment at scaffold_206:4130..4803+ (Clytia hemisphaerica)
AAAGAGGAGAACTCAATATAAAATTCAATATGATCATTTTAAATAGTTGC
GTTTCTTCATTATGTTTTAGATCGCTTTCCGAAACTAAATTGTTTCAGGT
GTACAGTGTGTGAAAGTAGCGAAACAGTGAAGAAAGTTGGGTACGAGTTT
GTTGTTCTCATTACTTTGGAAGGTAAATCATTTTCTAAACCTATGCCTTC
ACTNGTTTGTTGTTCTCATTACTTTGGAAGGTAAATCATTTTCTAAACCT
ATGCCTtcactcaaaatgaaaataaggcGCTTTCCTATCAAACTGATGCT
TAAACTTTAGGTTTTGTCATACCTATATTCATCTTCGTGCTTTTTTCTGT
CTTTTTATTTCGCTGTATTAAATTATTTCTTAGGTAGATTTGATCTTCAA
AGGTACACAGTTCTTTGTAAAGATTGTTCAGGAGAAGTAGACCCTTTCAC
GCTTCGAATCCTTTTAAAATCTGGTTATTGGCCGGGCAGTCCAAACAGTG
TGAATTATTTCATATCGGAAAAAGTCTTTCGCTTGTGAGATAAATTCCGC
AAATACATGCCGGGAAGCTCAGAGACGTCCTTCTTAAAAGCATTGTATAC
CATTTCGAAAGATAATGACCGAGTAAGTTTATATTCATTTTGTCAAGGTA
AATTTTAAATACCTAGAGTTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032846XLOC_032846Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051894-exon-scaffold_206-1491911889:4130..4301TCONS_00051894-exon-scaffold_206-1491911889:4130..4301Clytia hemisphaericaexon
TCONS_00051894-exon-scaffold_206-1510915933:4130..4301TCONS_00051894-exon-scaffold_206-1510915933:4130..4301Clytia hemisphaericaexon
TCONS_00051894-exon-scaffold_206-1575043694:4130..4301TCONS_00051894-exon-scaffold_206-1575043694:4130..4301Clytia hemisphaericaexon
TCONS_00051894-exon-scaffold_206-1491911889:4513..4803TCONS_00051894-exon-scaffold_206-1491911889:4513..4803Clytia hemisphaericaexon
TCONS_00051894-exon-scaffold_206-1510915933:4513..4803TCONS_00051894-exon-scaffold_206-1510915933:4513..4803Clytia hemisphaericaexon
TCONS_00051894-exon-scaffold_206-1575043694:4513..4803TCONS_00051894-exon-scaffold_206-1575043694:4513..4803Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:4130..4803 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.74899	2.5376	1.33927	0.262053	96.2525	77.8462	107.745	87.5888	67.1812	108.895	86.0431	68.2203	81.0967	92.1303	25.856	30.5614	42.3612	28.7598	24.9444	32.0067	19.8519	21.0858	9.22228	12.0848	101.976	47.9145	11.2999	8.78917	9.61184	7.89753
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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