TCONS_00051895 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051895
Unique NameTCONS_00051895
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051895 ID=TCONS_00051895|Name=TCONS_00051895|organism=Clytia hemisphaerica|type=transcript|length=313bp
GTTGTTCTCATTACTTTGGAAGGTAGATTTGATCTTCAAAGGTACACAGT
TCTTTGTAAAGATTGTTCAGGAGAAGTAGACCCTTTCACGCTTCGAATCC
TTTTAAAATCTGGTTATTGGCCGGGCAGTCCAAACAGTGTGAATTATTTC
ATATCGGAAAAAGTCTTTCGCTTGTGAGATAAATTCCGCAAATACATGCC
GGGAAGCTCAGAGACGTCCTTCTTAAAAGCATTGTATACCATTTCGAAAG
ATAATGACCGAGTAAGTTTATATTCATTTTGTCAAGGTAAATTTTAAATA
CCTAGAGTTTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_206:4338..4803+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051895 ID=TCONS_00051895|Name=TCONS_00051895|organism=Clytia hemisphaerica|type=transcript|length=466bp|location=Sequence derived from alignment at scaffold_206:4338..4803+ (Clytia hemisphaerica)
GTTGTTCTCATTACTTTGGAAGGTAAATCATTTTCTAAACCTATGCCTtc
actcaaaatgaaaataaggcGCTTTCCTATCAAACTGATGCTTAAACTTT
AGGTTTTGTCATACCTATATTCATCTTCGTGCTTTTTTCTGTCTTTTTAT
TTCGCTGTATTAAATTATTTCTTAGGTAGATTTGATCTTCAAAGGTACAC
AGTTCTTTGTAAAGATTGTTCAGGAGAAGTAGACCCTTTCACGCTTCGAA
TCCTTTTAAAATCTGGTTATTGGCCGGGCAGTCCAAACAGTGTGAATTAT
TTCATATCGGAAAAAGTCTTTCGCTTGTGAGATAAATTCCGCAAATACAT
GCCGGGAAGCTCAGAGACGTCCTTCTTAAAAGCATTGTATACCATTTCGA
AAGATAATGACCGAGTAAGTTTATATTCATTTTGTCAAGGTAAATTTTAA
ATACCTAGAGTTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032846XLOC_032846Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051895-exon-scaffold_206-1491911889:4338..4359TCONS_00051895-exon-scaffold_206-1491911889:4338..4359Clytia hemisphaericaexon
TCONS_00051895-exon-scaffold_206-1510915933:4338..4359TCONS_00051895-exon-scaffold_206-1510915933:4338..4359Clytia hemisphaericaexon
TCONS_00051895-exon-scaffold_206-1575043694:4338..4359TCONS_00051895-exon-scaffold_206-1575043694:4338..4359Clytia hemisphaericaexon
TCONS_00051895-exon-scaffold_206-1491911889:4513..4803TCONS_00051895-exon-scaffold_206-1491911889:4513..4803Clytia hemisphaericaexon
TCONS_00051895-exon-scaffold_206-1510915933:4513..4803TCONS_00051895-exon-scaffold_206-1510915933:4513..4803Clytia hemisphaericaexon
TCONS_00051895-exon-scaffold_206-1575043694:4513..4803TCONS_00051895-exon-scaffold_206-1575043694:4513..4803Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:4338..4803 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.78566	0.59139	0.115716	0	0	0	0	5.81316	12.1331	13.118	4.68657	0	0	0	1.64979	0	3.5156	0	0	0	0.626196	1.72623	0	0	0	4.25405e-06	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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