TCONS_00051914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051914
Unique NameTCONS_00051914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051914 ID=TCONS_00051914|Name=TCONS_00051914|organism=Clytia hemisphaerica|type=transcript|length=358bp
CAGCTACAGGACAACAAAACAAAGGTTTCCACGAAATGACCAGTCCAATC
ACACACCAAACTCAAGTGCAGGTGAATCCACAAGTTGTTTATCCTGCACC
AATTCAATCATTGGAAACTTATCCATCCAACTACAAATGTCTTGCATGGA
CTGGTTATGCATGTTGTTCATGCCCTCTTGGATGTGCCGCTGTTCTCGCT
TCAAACCATGTTGATATGGCCTTAACAATGCGTAACTATGAAGCTGCTGA
AATCCATTCCAAACGAACAAAATGTTTATCCATTACTGCTATCATTCTTG
GATGTATTTTCAGCTTTCTCGTGTTTGGTCTCCCGATAATCTTACTTTTA
GGAGCTAC
Run BLAST on NCBI

protein sequence of TCONS_00051914-protein

>TCONS_00051914-protein ID=TCONS_00051914-protein|Name=TCONS_00051914-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
ATGQQNKGFHEMTSPITHQTQVQVNPQVVYPAPIQSLETYPSNYKCLAWT
GYACCSCPLGCAAVLASNHVDMALTMRNYEAAEIHSKRTKCLSITAIILG
CIFSFLVFGLPIILLLGA
Run BLAST on NCBI

transcript from alignment at scaffold_206:171444..177024-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051914 ID=TCONS_00051914|Name=TCONS_00051914|organism=Clytia hemisphaerica|type=transcript|length=5581bp|location=Sequence derived from alignment at scaffold_206:171444..177024- (Clytia hemisphaerica)
CAGCTACAGGTACGTGATTCTGAAATGGTATCAGTTCACTCTCTTATTCG
ATCTTATTCGGACCGATTATTTTCTTTTTTTTTATCTATAGTATATAATA
TAATATAATAATAATAAAGCTTTACAGGTTTGCAGGCCACCGTGAAGACA
CATGGGCCTCTATATAAACCGCTCGTACTTTTTACAATGATCTTTTTGAA
AAAGAGTTTTTTTCGCGGGCGGGGAGCGGACTTTCCATTTTGTGTTGTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTTCGTAAATGTGACTTTA
ATTGGTCGGTATCTCGCTTTATCTTCTCTTTCTTTCGTAAATTTCCCGAT
CCGCTGCGTCTCGGTAATCTTTATATTCCTCAGATGCAGTCGCTGACCAA
TAATTTTGTCATGGATAAATTCTTCGTCCTCGGTTTTTGTTTCTTCTTCA
GTTTCATCTGTCGACTCATCAATCCCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTCTCGATGTGTTTGGATGTGATTTTAGCGTAGCTCA
TTGGTGGTCTTTTCTCTTCTTTCTTTTCGATGATGCTTTCAATCTTCTTT
TCAAGCGTGGTTATATAGTAACACGAACAAATAGTAAAAATCTAAAGGTT
CCTATCCTCCCGCAAAAGGACCACCAGATCATACCGCCAGGAGGAAGAAA
CCCCAAATGAGCTTACAAAATGAGCAATAATGATTAAGAAATGAAAATAT
ATATAAAAAAACAACAAAAACTAACTACGCAGAAAATAATTGATAACAAG
AAGAAAAAAACAAAAAGCATTTTCTTTGCGACCGTAGTGCAGTGGTAGAG
CATCCGGCTACGGTGCGTAAGGTTGTGGGTGCCATCACTTACTTGATGCC
TCTCTGCTTGATGCTCAGCAAGTAAGAGAAGGGTTCAATGGTAAGTGGAG
AAATCCAGGGAGAAAGAATGACGCCCTCCCCTATCTTTAATTTTGTTACA
GGACAACAAAACAAAGGTTTCCACGAAATGACCAGTCCAATCACACACCA
AACTCAAGTGCAGGTGAATCCACAAGTAAGTCTGATCACGAAGTATTTCA
AACCTATTTTAAACCGAGGCTTAGACCTGCATATGCCAATATCCTGTCTC
ACAGCCCCAGAGGAAGTTTTTCCCTCAGTGGGGATAAAATTTATTATTGA
ATTAGATAGAAATTATATATTGTTCCAAGGTTAAAATATCCAGTGGGGAT
AGTTTTGGAGTGCAATTTTTAATCGTTGAATTTTGAATGGGGATAAAATC
AAAAGTCAATTTTCCAGAGGGGCTGGGGTCCCAGCGGATCTGTGACACAG
GGGTGTATATCCCCATAGGCCATTTCACAGTCGAAATGAATCATGGGTAA
TAAGGACTGTCTGCGCTTTAGTTACGACTTTCGGTTGGTTAAACACAAAA
ATCTTCAAAATTCTACAAAACTTTAGATCAATCGTGGATATCCAGGCTGT
AAACTATTTCACAGTCTAGTTTTTGACATTTTATGCTCTGGTTTACAGCC
TGGTCTCCCTAGAGCGATTTGCATTCTCTTTAAGAGAATGCAGTCCGCTT
GCTTGCGCTCACTTCGCTAAAGCCGTAAGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGGAGACCAAGCTCTATAAT
TTTAGAACTTTGTATGTTGAGGTAAATTTTGTTTTTTCTAAAATTTTGAG
CTTGGATATCCAGGCTAATCAATCGTAAGTTCGTCATTATTCCACAGTGG
TCCTGATTAACCATTAGCTTTGCGACTGTGAAATAGCCTAAGCTTGAGGA
TATTGTACAATTTATGGTAGCAAAAGCAACGAACACATATTTCATACTTT
GAGTATTAGAGGTTAAGTTTTCAAAGAATATATTAACCTCTGACCAATAA
TATATATTTTATCGTGCATGTGTCAATCTAATCACTGTAGAAAAAATCAA
AGATGAAGAGCAAATATTACCATATTAATGTCTAGCAGACTGTATCAGTA
TGCAGTTTACTATTTACGAATTCCCCAGAAACTTCTAAGTGTAATTGAAA
CGATATTCTATCAAAAGAAATCTTTTACATGATCCCCAAATGTATAACAG
TAATTACTAAACTTTTAATTATACAGGGTGTCCCTAATAAAAGTATCGAG
TTTGAACATGCGATTGAGTAAAAAAGTTTGTGTGTGTTATCGCTAAAATA
TAAGAACGTTCTCCATCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAAGAGGGAGAGCTTAAAATACAATTTTGTGAATACACACTTA
AAACTTTCTACTCAATCGCATGTTCAAACTCGATACTTTTATTAGGGACA
CCCTGTAGAAATGTCACTTTAATTGAATCGAAATAATAGACAGACTTTAT
GTTATGATTCTCTATCACTGACTCTTTTTAAAAAGCATTAATGACATTTA
TGAGTTGTGTTCTCAACGACGGGAATAAAATATCAACTTTGAACTTCATC
CAAGATCTTGGATGGTCGTCATGGTTACTTTTGTCTTCGTTGATTGCGCG
CTGAATAGAATCTCAATTCGTCGGCACAGCGTCAATATATGATTTTGACA
TGTGCTATTCACGGTACATATTTCAAGTAACCCTAAAAATTGACAGCATT
TAAACCCCATCAGAGTTGATTGTGAGAATATTCGTGAATAAATCTGGTCC
AAAAATCATATTACTACTGTAAATATAACAAATCCCTTTGTGTCAGCTGA
TAGGTCGACTTAAACAGATTTTATACCCATTTCAAGTTTTTAAGTTAAGA
AACTAAGCGTATTAAGAACCCATTGTAAGAACATTTAAGCCTAAGAATAA
AAAAAAATTGAAATATGTATTCATTTAGTATTTGATTGAATCTCTTACAT
CAAAGGTTGTTTATCCTGCACCAATTCAATCATTGGAAACTTATCCATCC
AACTACAAATGTCTTGCATGGACTGGTTATGCATGTTGTTCATGCCCTCT
TGGATGTGCCGCTGTTCTCGCTTCAAACCATGTGAGTTGTTAACTTAAAT
CTCTGGTTTTCAGCATGAACTCTTTCAGGGCAACGAAAATCGAAAAAATC
GATTTTTCGTTTTTTAGAAGTTTAAACTTCAGAGCGATCTAAATAAGTCA
TGTTTGGGTTCGTTGGAAAGCTCTTTTTATGTTTTATCTTTTCAGCGTGC
CAGATTTTTAAATAAGGTCCTCAAAAAGTGTTACGGCAGCCGAAAAGTAT
CGTTCTTTTCACAGTGGGGATAGGAATTTTATGAATAGGGATGGAAATTC
TATCGTTCCTGAGTCAAAAAATTTAGTGGGGATGGTTTTGGAGTGAAATT
TTTTCCATTTTTTCCATTGAATTTCAAACATGGATGGAAGCAAAGTCAAT
TTCCTGGTGGGGCTAAAGTTATGGGTTTCTTCCACCGGGAAGGAAATTTT
GGCCATTTTTTTTTGATTCCATTAAAGTAACATTACCATAATTAATAGGT
TAGTAATGTTGCATTGCACCAACGCGAAAAAATCTTCTCGTGTCCCCAAG
CCTTTAGAATACTTTATTTCTTTTACCTATAGGTTGATATGGCCTTAACA
ATGCGTAACTATGAAGCTGCTGAAATCCATTCCAAACGAACAAAATGTTT
ATCCATTACTGCTATCATTCTTGGATGTATTTTCAGCTTTCTCGTGTTTG
GTCTCCCGATAATCTTACTTTTAGGAGCTAC

Coding sequence (CDS) from alignment at scaffold_206:171444..177024-

>TCONS_00051914 ID=TCONS_00051914|Name=TCONS_00051914|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_206:171444..177024- (Clytia hemisphaerica)
GTTGATATGGCCTTAACAATGCGTAACTATGAAGCTGCTGAAATCCATTC
CAAACGAACAAAATGTTTATCCATTACTGCTATCATTCTTGGATGTATTT
TCAGCTTTCTCGTGTTTGGTCTCCCGATAATCTTACTTTTAGGAGCTGTT
GTTTATCCTGCACCAATTCAATCATTGGAAACTTATCCATCCAACTACAA
ATGTCTTGCATGGACTGGTTATGCATGTTGTTCATGCCCTCTTGGATGTG
CCGCTGTTCTCGCTTCAAACCATGACAACAAAACAAAGGTTTCCACGAAA
TGACCAGTCCAATCACACACCAAACTCAAGTGCAGGTGAATCCACAAGCT
ACAGGTTGATATGGCCTTAACAATGCGTAACTATGAAGCTGCTGAAATCC
ATTCCAAACGAACAAAATGTTTATCCATTACTGCTATCATTCTTGGATGT
ATTTTCAGCTTTCTCGTGTTTGGTCTCCCGATAATCTTACTTTTAGGAGC
TGTTGTTTATCCTGCACCAATTCAATCATTGGAAACTTATCCATCCAACT
ACAAATGTCTTGCATGGACTGGTTATGCATGTTGTTCATGCCCTCTTGGA
TGTGCCGCTGTTCTCGCTTCAAACCATGACAACAAAACAAAGGTTTCCAC
GAAATGACCAGTCCAATCACACACCAAACTCAAGTGCAGGTGAATCCACA
AGCTACAGGTTGATATGGCCTTAACAATGCGTAACTATGAAGCTGCTGAA
ATCCATTCCAAACGAACAAAATGTTTATCCATTACTGCTATCATTCTTGG
ATGTATTTTCAGCTTTCTCGTGTTTGGTCTCCCGATAATCTTACTTTTAG
GAGCTGTTGTTTATCCTGCACCAATTCAATCATTGGAAACTTATCCATCC
AACTACAAATGTCTTGCATGGACTGGTTATGCATGTTGTTCATGCCCTCT
TGGATGTGCCGCTGTTCTCGCTTCAAACCATGACAACAAAACAAAGGTTT
CCACGAAATGACCAGTCCAATCACACACCAAACTCAAGTGCAGGTGAATC
CACAAGCTACAGGTTGATATGGCCTTAACAATGCGTAACTATGAAGCTGC
TGAAATCCATTCCAAACGAACAAAATGTTTATCCATTACTGCTATCATTC
TTGGATGTATTTTCAGCTTTCTCGTGTTTGGTCTCCCGATAATCTTACTT
TTAGGAGCTGTTGTTTATCCTGCACCAATTCAATCATTGGAAACTTATCC
ATCCAACTACAAATGTCTTGCATGGACTGGTTATGCATGTTGTTCATGCC
CTCTTGGATGTGCCGCTGTTCTCGCTTCAAACCATGACAACAAAACAAAG
GTTTCCACGAAATGACCAGTCCAATCACACACCAAACTCAAGTGCAGGTG
AATCCACAAGCTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032856XLOC_032856Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051914-exon-scaffold_206-1575043694:177016..177024TCONS_00051914-exon-scaffold_206-1575043694:177016..177024Clytia hemisphaericaexon
TCONS_00051914-exon-scaffold_206-1575043694:175050..175123TCONS_00051914-exon-scaffold_206-1575043694:175050..175123Clytia hemisphaericaexon
TCONS_00051914-exon-scaffold_206-1575043694:172144..172269TCONS_00051914-exon-scaffold_206-1575043694:172144..172269Clytia hemisphaericaexon
TCONS_00051914-exon-scaffold_206-1575043694:171444..171592TCONS_00051914-exon-scaffold_206-1575043694:171444..171592Clytia hemisphaericaexon
TCONS_00051914-exon-scaffold_206-1510915933:177016..177024TCONS_00051914-exon-scaffold_206-1510915933:177016..177024Clytia hemisphaericaexon
TCONS_00051914-exon-scaffold_206-1510915933:175050..175123TCONS_00051914-exon-scaffold_206-1510915933:175050..175123Clytia hemisphaericaexon
TCONS_00051914-exon-scaffold_206-1510915933:172144..172269TCONS_00051914-exon-scaffold_206-1510915933:172144..172269Clytia hemisphaericaexon
TCONS_00051914-exon-scaffold_206-1510915933:171444..171592TCONS_00051914-exon-scaffold_206-1510915933:171444..171592Clytia hemisphaericaexon
TCONS_00051914-exon-scaffold_206-1491911889:177016..177024TCONS_00051914-exon-scaffold_206-1491911889:177016..177024Clytia hemisphaericaexon
TCONS_00051914-exon-scaffold_206-1491911889:175050..175123TCONS_00051914-exon-scaffold_206-1491911889:175050..175123Clytia hemisphaericaexon
TCONS_00051914-exon-scaffold_206-1491911889:172144..172269TCONS_00051914-exon-scaffold_206-1491911889:172144..172269Clytia hemisphaericaexon
TCONS_00051914-exon-scaffold_206-1491911889:171444..171592TCONS_00051914-exon-scaffold_206-1491911889:171444..171592Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051914-proteinTCONS_00051914-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:171444..177024 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.507473	0.306122	0.286588	0.200647	1.24267	0.964931	0.158577	3.00877	2.13791	0	0	0	0	3.29045	18.0107	0	0.336871	0	0.248203	1.53386	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007593CD225/Dispanin_fam
Vocabulary: Biological Process
TermDefinition
GO:0009607response to biotic stimulus
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009607 response to biotic stimulus
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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