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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051917 ID=TCONS_00051917|Name=TCONS_00051917|organism=Clytia hemisphaerica|type=transcript|length=2114bpRun BLAST on NCBI protein sequence of TCONS_00051917-protein >TCONS_00051917-protein ID=TCONS_00051917-protein|Name=TCONS_00051917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=571bp MRTSIFIFCLLFGVIFAKSCLDEVKELEAKPPMVGAYKPICQTNGLYAETRun BLAST on NCBI transcript from alignment at scaffold_206:190695..202051- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051917 ID=TCONS_00051917|Name=TCONS_00051917|organism=Clytia hemisphaerica|type=transcript|length=11357bp|location=Sequence derived from alignment at scaffold_206:190695..202051- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_206:190695..202051- >TCONS_00051917 ID=TCONS_00051917|Name=TCONS_00051917|organism=Clytia hemisphaerica|type=CDS|length=29172bp|location=Sequence derived from alignment at scaffold_206:190695..202051- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00051917 vs. Swiss-Prot (Human)
Match: SMOC1 (SPARC-related modular calcium-binding protein 1 OS=Homo sapiens GN=SMOC1 PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 9.727e-26 Identity = 85/266 (31.95%), Postives = 126/266 (47.37%), Query Frame = 1
Query: 283 KPICQTNGLYAETQYHASYYFCVNPKTGEKILGTDVRFRKPSSCKT---TPCMLQRHQGMLNSKQGMVGHFTPQCEEDGSFKKVQCHASTGFCYCVVPETGAKVVGTEVRGKLTNCEATGVNNAKTCLNHLQELD-AKPALLGAFRPVCQANGLYAETQCHGSTGFCFCVVPETGKKILGTEIRGKPKSCKATPCMLQRHQGMLKSQKM-MVGHFTPQCEEDGSFKKVQCHGSTGYCFCVAADTGVKVEGTEVRGKPTNCETADNA 1065
KPIC ++G E+ C +P LG R R CK + C L+R Q + +K+ F P+C EDGSF +VQCH TG+C+CV P+ G + G+ V+ K C + + + N ++ D +KP +PV + + A T V+ ++ K+ T IR S K C +R + ++Q+ G P+C G +K VQCH STGYC+CV DTG + GT R +CE+ A
Sbjct: 53 KPICASDGRSYESMCEYQRAKCRDP-----TLGVVHRGR----CKDAGQSKCRLERAQALEQAKKPQEAVFVPECGEDGSFTQVQCHTYTGYCWCVTPD-GKPISGSSVQNKTPVCSGSVTDKPLSQGNSGRKDDGSKPTPTMETQPVFDGDEITAPT-----LWIKHLVIKDS--KLNNTNIRN---SEKVYSCDQERQSALEEAQQNPREGIVIPECAPGGLYKPVQCHQSTGYCWCVLVDTGRPLPGTSTRYVMPSCESDARA 298 HSP 2 Score: 103.99 bits (258), Expect = 1.352e-23 Identity = 79/259 (30.50%), Postives = 125/259 (48.26%), Query Frame = 1
Query: 706 RPVCQANGLYAETQCHGSTGFCFCVVPETGKKILGTEIRGKPKSCKATPCMLQRHQGMLKSQKMMVGHFTPQCEEDGSFKKVQCHGSTGYCFCVAADTGVKVEGTEVRGKPTNCETADNADKPCLKQLNELQAKQPLLGQFKPKCQANGMF--AEMQSHAGYHYCVFPKTGEEIKGTRIRFAQPKTCKATPCLIQRHHAMKDSDRG-MVGQFTPQCETDGSFTVTQCHSSTGFCFCVVPETGEKLLGTELRFKKPKNCE 1473
+P+C ++G E+ C C LG RG+ K + C L+R Q + +++K F P+C EDGSF +VQCH TGYC+CV D G + G+ V+ K C + DKP L Q N ++ + P + +F E+ + + + K ++ T IR ++ K C +R A++++ + G P+C G + QCH STG+C+CV+ +TG L GT R+ P +CE
Sbjct: 53 KPICASDGRSYESMCEYQRAKCR-------DPTLGVVHRGRCKDAGQSKCRLERAQALEQAKKPQEAVFVPECGEDGSFTQVQCHTYTGYCWCVTPD-GKPISGSSVQNKTPVC-SGSVTDKP-LSQGN--SGRKDDGSKPTPTMETQPVFDGDEITAPTLWIKHLVIKDS-KLNNTNIRNSE----KVYSCDQERQSALEEAQQNPREGIVIPECAPGGLYKPVQCHQSTGYCWCVLVDTGRPLPGTSTRYVMP-SCE 293 The following BLAST results are available for this feature:
BLAST of TCONS_00051917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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