TCONS_00051919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051919
Unique NameTCONS_00051919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051919 ID=TCONS_00051919|Name=TCONS_00051919|organism=Clytia hemisphaerica|type=transcript|length=809bp
CTGACCTTGTGCATCGCTTCACAAGGCTTTGTCGTGTTTACCTATCAACG
TAAAcaacaattatttttttatagataTATAATATCTTCTCTTGGATTTG
TCGCTTATCATTTTACGCTTAACACTCAAAATGAGAACAagtatttttat
cttttgtctCCTATTTGGAGtaatCTTTGCCAAGTCATGCTTGGACGAGG
TTAAAGAATTGGAAGCTAAACCACCTATGGTTGGCGCTTACAAACCCATC
TGCCAAACCAATGGTCTTTATGCTGAAACACAATACCACGCTAGTTACTA
TTTCTGTGTCAACCCGAAAACTGGTGAAAAGATCTTGGGAACCGATGTTC
GTTTCCGAAAACCGTCATCATGCAAAACCACACcaTGTATGTTACAACGT
CACCAGGGTATGTTGAACTCCAAGCAAGGAATGGTCGGTCATTTTACACC
ACAATGTGAAGAAGACGGTTCTTTCAAGAAAGTTCAATGTCATGCTTCCA
CTGGCTTTTGTTATTGTGTTGTACCTGAAACTGGAGCTAAAGTCGTCGGA
ACTGAAGTCCGTGGAAAGCCAACCAACTGTGAAGCTACAGGTGTCAATAA
CGCCAAGACATGCTTGAAACATTTGCAAGAATTAGATGCCAAACCAGCAT
TGTTGGGAGCTTTCCGACCAGTCTGTCAAGCTAATGGACTTTACGCTGAA
ACACAATGTCATGgTTCCACAGGATTTTGCTTCTGTGTTGTACCAGAAAC
TGGCAAAAAGATTTTGGGAACTGAAATTCGTGGAAAACCAAAATCATGCA
GAGCTACAC
Run BLAST on NCBI

transcript from alignment at scaffold_206:195199..202010-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051919 ID=TCONS_00051919|Name=TCONS_00051919|organism=Clytia hemisphaerica|type=transcript|length=6812bp|location=Sequence derived from alignment at scaffold_206:195199..202010- (Clytia hemisphaerica)
CTGACCTTGTGCATCGCTTCACAAGGCTTTGTCGTGTTTACCTATCAACG TAAACAACAATTATTTTTTTATAGATATATAATATCTTCTCTTGGATTTG TCGCTTATCATTTTACGCTTAACACTCAAAATGAGAACAAGTATTTTTAT CTTTTGTCTCCTATTTGGAGGTAAGTTAATACTTTTGTTCATTCGTTATT TAGTTTTCCTTTGGTTTTCTTTCCTTTGGATCACTCGAATCTCAGCTCGA ATATGTATCACTTTTACGCGAACATTTTGTTTTTGTTTTTTAATTTAGGC GAGAACTTGTTTTGGCGTGGCAGTAACTGATTTAATTTTGGCGAGAACTA ATTCGCTGGCACTAGTTACCTTCGAATAGTGGGGAAATTTGTTTAACTCG AAATACACATATACAAGGAATTATAGTTTCAGTTTGATGTGGGATAATTT TGGTTTGACATCTGTTGACATGGCTTACTTAGAAATTGAATGACTTGCTT TTTTATTTTCAGTAATCTTTGCCAAGTCATGCTTGGACGAGGTTAAAGAA TTGGAAGCTAAACCACCTATGGTTGGCGCTTACAAACCCATCTGCCAAAC CAATGGTCTTTATGCTGAAACACAATACCACGGTAAGTCCTAAGATCGTG TTGGATGATCTGGTCTTGGATTGAATAATTGTCTGTTACATTTTTGTATT AATTTTTACTACACTTACTTAAAACAAAACGGTGACTTTGAGGTCAAAAC AGTACACATATCTTTCTTTTTTAGAACCAAAAGATACACGTTATTTTATA AGAACAATCTGTATAAAAACATAAGACTTCGGTGGCCAAAATGTTAACCC AAATTTATCTGGTCCCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNCCAGGGGGTTAAAAATCAAAATGTCCAGGGGT AATGCATGAAAAAAATAATATATCCTCCACCCCCCATGAACGGATTTTTT CTGGAAGAGCCCATTTCTGGTCGATGTTTAGAAACTCCCATATTTTTATT TTGTCCAGTTATGTTTTATGTGTTTCATTGTTTCAATGTTCATTGATTAG TTTTGATAATCAGGTAGGTCCATAAAAGTATGACTTGTTTTATTTCCGCT TCAAGCGATAACTTCGTTTTTTATTTCAGCTAGTTACTATTTCTGTGTCA ACCCGAAAACTGGTGAAAAGATCTTGGGAACCGATGTTCGTTTCCGAAAA CCGTCATCATGCAAAACCACACGTAAGAATGCTATTTCTTCATATAGAAA GAAGAAAGAGCTATAGCCTGGAGATTCATGCTATTACTTCTTCTTTTTAT ATACTGATGTTGACATGAAATAGCATGGTTCGGGTTAAGAGTTTGAATTT CCCAGATTCTAATGACGGTTGAAAACACAACCAATCAAATTTTGTTATTC TGTCACTGGTCACATTTTCTTAGAGAAAACGCAAGTTCCGAAATTTGGTT TTAATTTCAGTAAGCGAGGACAGTGCTAAATTCGAATATCCCACTGTAAA TTTTTTGAGGTAGAAATCTGCCTCACAGCTCAAACCCGTCCTGTATATAT CAGATTATAAAAATCTCCTGTCTAGAATAGCTAGAGAAGAAGGAATCCAC TATTCGTTATTAACCAAGTTTTTGTTTTTGCACTTTTGAGGACAGCGGAA TTATTCAATCAATTTGGAATAACCCGCAATTTTGACAACACAAACTCGCT ATTATTTGAAATTTACCGGATATCATAATTCAAAATTAATAATTGTTCTA ATGTTGTTCAAATTATTTTCAGCATGTATGTTACAACGTCACCAGGGTAT GTTGAACTCCAAGCAAGGAATGGTCGGTCATTTTACACCACAATGTGAAG AAGACGGTTCTTTCAAGAAAGTTCAATGTCATGGTATGTTGTAATTTAAT CCAATCGAAATCTAAAATCCAATTCAAATTTCACCAATATCTAAGATTAG AGAAATGATTTATGTTTTTTTACCAGTGGTTAATTTGAATTTTCTAATGA AAAGATTTTACGTGTGAACATCCAATTGGGTCGACTTCTGAGATGGACTA GGGTTTTGCATGATGCAGATAGACTTCTTTTGGCTTCTAGGCCGAAAATC ATACAATGCTTATTAAACCTTAGAAATTTTCATTAATGACCTGTTTTCTT TATTTATGTAATACTCTCGGGTACCTAATAGCCGCTCCCCCCCCCCCCCN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC CCCCCCCCCCCCCCTCCGCTTATTCCAATCCCCCCGGCTATTAGGTACCC GAGAGTATTTACATATACTTTTGAGATATGAAAAAAAATAATTATTTTTC TTATACAGCTTCCACTGGCTTTTGTTATTGTGTTGTACCTGAAACTGGAG CTAAAGTCGTCGGAACTGAAGTCCGTGGAAAGCTAACCAACTGTGAAGCT ACAGGTTAATTTCAACTTTATGTATTCTTATCATTGTTCACCCTATCTTA AAAAGCCTGTTAACCGAAAAAAACCTTTTTCCTATATGCCTGATTGTTTA CTCAAATTACTTTATATGTATTTTTTAGGTGTCAATAACGCCAAGACTTG CTTGAATCATTTGCAAGAATTAGATGCCAAACCAGCATTGTTGGGAGCTT TCCGACCAGTCTGTCAAGCTAATGGACTTTACGCTGAAACTCAATGTCAT GGTATATACCATTGCATAATTTTGTTTGAATTTTAAAGCCTCTCAACAAC ATTTTACAGAGAGGAGGATTTCAATCTTTCATTAATTATCAGATCAAACA GACCTTTTAGGACTGAATAAAGTCCGTTTTATGTATTATTTATTGAGGAG CATCGGCCGAGTAGTCAAGGTGTCAGCATCTCAAACCAGGGGTTTGTGAT TTGAAGCCCCCCCTCATTCTAATGTTTCGTTAGGTCTTTTGATAGCCCTG GGGGGGGGGGTACTAGGGTTAGAGGATGAGGGGTATGTGCGGATGGGACC TATTAAAACCGACCCTTAGAGAGACTGATTTTTGCTGAAAAGGTGACCCT TAGAGAGACTTTCTTGAAAAGTTTTCTTTGATTTTTGAAAATTTTTTACC CTTATTTTTCACTCTAAATAAAAAAAAAATCCTAAAAATCGTTTTCCGAC CCTTAGAGAGACTAATTTAAATTTTTCTGATTTTTGCAACTCTTAAAGAG ATTTTGTAAGATGAAAAACCGACCCCTACCGTCTGCACATACCCAGCACC TATTTTTGCCTAATAACCCCCCTCCTCTGATAAACAGCAGAGTCGACTGG CTGTGGATCCAGTGAAATCAATCAAAAGGGAAAACGAACGAAAGTAAAAA CAATTGAACGATTTCTAAAAGCCCTACATTACTGGGCTATCCACGTAAAA TATCGGATCAGTAATCATATTCGTCAACAATTTTGTTTTTTTGTGTTTGT AGGCTCCACAGGGTTTTGCTTCTGTGTTGTACCAGAAACTGGCAAAAAGA TTTTGGGAACTGAAATTCGTGGAAAACCANTAGGTTCCACAGGGTTTTGC TTCTGTGTTGTACCAGAAACTGGCAAAAAGATTTTGGGAACTGAAATTCG TGGAAAACCAAAATCATGCAAAGCTACACGTGAGATGCGCTTCAATCTAT TTTTCCTTGTTTAATAGTTGTGTTCTAAAGATTCTTAGACACGAAAGTTT CATTTTATTATCATATTGTAAGGTTAACAATCCGTAATTCATAGGGCTAA ACCTGCTTGAGATTGAGGCTTTACCCCTGAGTTGTTTGAAAATAAAAGAC AAATCAAGTAAAAGAAATAATTTGAAAACTTACTGTATACCGTATTTTCT CTGTTCAGCACCACTTTCTTTAGAGGCCTGAAATTTACATCTCGTAAATG ACATCTCGAAAATGGAGGAAATTCATTCACATTTTTACGTTTGCAGACTA GAAAGTATAATTTATGACTAATTAGTTTTTGTTTTAACTTTCCAGCCTGT TTATTGGCACGTCACGAAGGATTATCGAAATCACAAAAAATGATGGTGGG TCATTTCACACCACAATGTGAAGAAGATGGTTCTTTCAAGAAAGTTCAAT GTCACGGTATGTTGTNACACCACAATGTGAAGAAGATGGTTCTTTCAAGA AAGTCCAATGTCATGGTATGTTGTTATTGTCATTCTGGTTGCTAATGATG AGCTATCCCGTAGGGGGCGCACTCGGTCTAAAAACATTCGGGTCTTGAAA TTGGACCCTGGCAGTACAAAGAAGATTTAACCAAATTTGACCTTTACGGT GTATTTCCTTGAAAGAATTTCGTCCATTTTTAAAGAAATAATAGTCAGAT TTTCCAATGTTCTGGCCAAGCATCTTCGTTTTTCTTTAATCTTTAAACCC TTTTAGTGCAATTTTTCTAATTACGACCCTAAACTTTAGGAGTCTTGAAA TAACACACCCTTACAATTTTCTTATACAGCTTCCACTGGCTTTTGTTATT GTGTTGTACCTGAAACTGGAGCTAAAGTCGTCGGAACTGAAGTCCGTGGA AAGCCAACCAACTGTGAAGCTACAGGTTGATTTCAATTATATATCTTCTT TTTATTTATCTTATCTTAAAAAAGCCTGTTAACCGAAAAAACTTATTTTA TTTTGCCTGATTATTTACTCAAATTACTTTACATGTACTTTTAGGTGTCA ATAACGCCAAGACATGCTTGAAACATTTGCAAGAATTAGATGCCAAACCA GCATTGTTGGGAGCTTTCCGACCAGTCTGTCAAGCTAATGGACTTTACGC TGAAACACAATGTCATGGTAAATACCATTGCGTAATTTTGTTTGAATTCA AACGTTTATGATAAAATTAAAGCCTCTCAACAACAGTTTACAGGGAGGAG GATTTTATCATTCATTATCAGATCAAGCAGATCTTTGACGAATGAATAAA GTCTGTTTTATGTATGATTTATTGAGGAGCATTGGCCGAGTAGTCAACCG TCGTCAGCTCCTCAAACCAGGGGTTCGCGGTTTGATTTGAATCCCATCTC CTTCCAATGTTCCGTTCTGTTTTTAGATAACAGAGCCGGTTGGCCATGGG CCCATTGAAAATAATCGAATGACTTTCTAAATGTCCTAATTACTGAGCTA TCCACGTAAAATATTAACTATTGGATTAATAATCATTTTCCTGAAAAAAT ATTTTTTATTCTTTAGGTTCCACAGGATTTTGCTTCTGTGTTGTACCAGA AACTGGCAAAAAGATTTTGGGAACTGAAATTCGTGGAAAACCAAAATCAT GCAGAGCTACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032858XLOC_032858Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051919-exon-scaffold_206-1575043694:201841..202010TCONS_00051919-exon-scaffold_206-1575043694:201841..202010Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1575043694:201379..201498TCONS_00051919-exon-scaffold_206-1575043694:201379..201498Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1575043694:200639..200731TCONS_00051919-exon-scaffold_206-1575043694:200639..200731Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1575043694:199978..200088TCONS_00051919-exon-scaffold_206-1575043694:199978..200088Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1575043694:198123..198152TCONS_00051919-exon-scaffold_206-1575043694:198123..198152Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1575043694:195936..196001TCONS_00051919-exon-scaffold_206-1575043694:195936..196001Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1575043694:195694..195816TCONS_00051919-exon-scaffold_206-1575043694:195694..195816Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1575043694:195199..195294TCONS_00051919-exon-scaffold_206-1575043694:195199..195294Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:201841..202010TCONS_00051919-exon-scaffold_206-1510915933:201841..202010Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:201379..201498TCONS_00051919-exon-scaffold_206-1510915933:201379..201498Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:200639..200731TCONS_00051919-exon-scaffold_206-1510915933:200639..200731Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:199978..200088TCONS_00051919-exon-scaffold_206-1510915933:199978..200088Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:198123..198152TCONS_00051919-exon-scaffold_206-1510915933:198123..198152Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:195936..196001TCONS_00051919-exon-scaffold_206-1510915933:195936..196001Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:195694..195816TCONS_00051919-exon-scaffold_206-1510915933:195694..195816Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1510915933:195199..195294TCONS_00051919-exon-scaffold_206-1510915933:195199..195294Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:201841..202010TCONS_00051919-exon-scaffold_206-1491911889:201841..202010Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:201379..201498TCONS_00051919-exon-scaffold_206-1491911889:201379..201498Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:200639..200731TCONS_00051919-exon-scaffold_206-1491911889:200639..200731Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:199978..200088TCONS_00051919-exon-scaffold_206-1491911889:199978..200088Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:198123..198152TCONS_00051919-exon-scaffold_206-1491911889:198123..198152Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:195936..196001TCONS_00051919-exon-scaffold_206-1491911889:195936..196001Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:195694..195816TCONS_00051919-exon-scaffold_206-1491911889:195694..195816Clytia hemisphaericaexon
TCONS_00051919-exon-scaffold_206-1491911889:195199..195294TCONS_00051919-exon-scaffold_206-1491911889:195199..195294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:195199..202010 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (0.0000028627 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 2.8627e-06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800Sequence
Match NameE-valueIdentityDescription
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