TCONS_00051920 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051920
Unique NameTCONS_00051920
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051920 ID=TCONS_00051920|Name=TCONS_00051920|organism=Clytia hemisphaerica|type=transcript|length=1276bp
AAGTAAATATTATCACAACCTGAACTTGTATAAAACGGGATCTGACCTTG
TGCATCGCTTCACAAGGCTTTGTCGTGTTTACCTATCAACGTAAAcaaca
attatttttttatagataTATAATATCTTCTCTTGGATTTGTCGCTTATC
ATTTTACGCTTAACACTCAAAATGAGAACAagtatttttatcttttgtct
CCTATTTGGAGtaatCTTTGCCAAGTCATGCTTGGACGAGGTTAAAGAAT
TGGAAGCTAAACCACCTATGGTTGGCGCTTACAAACCCATCTGCCAAACC
AATGGTCTTTATGCTGAAACACAATACCACGCTAGTTACTATTTCTGTGT
CAACCCGAAAACTGGTGAAAAGATCTTGGGAACCGATGTTCGTTTCCGAA
AACCGTCATCATGCAAAACCACACcaTGTATGTTACAACGTCACCAGGGT
ATGTTGAACTCCAAGCAAGGAATGGTCGGTCATTTTACACCACAATGTGA
AGAAGACGGTTCTTTCAAGAAAGTTCAATGTCATGCTTCCACTGGCTTTT
GTTATTGTGTTGTACCTGAAACTGGAGCTAAAGTCGTCGGAACTGAAGTC
CGTGGAAAGCTAACCAACTGTGAAGCTACAGGTGTCAATAACGCCAAGAC
TTGCTTGAATCATTTGCAAGAATTAGATGCCAAACCAGCATTGTTGGGAG
CTTTCCGACCAGTCTGTCAAGCTAATGGACTTTACGCTGAAACTCAATGT
CATGGTTCCACAGGGTTTTGCTTCTGTGTTGTACCAGAAACTGGCAAAAA
GATTTTGGGAACTGAAATTCGTGGAAAACCAAAATCATGCAAAGCTACAC
CCTGTTTATTGGCACGTCACGAAGGATTAtcgaaatcacaaaaaatgatG
GTGGGTCATTTCACACCACAATGTGAAGAAGATGGTTCTTTCAAGAAAGT
TCAATGTCACGCTTCCACTGGCTTTTGTTATTGTGTTGTACCTGAAACTG
GAGCTAAAGTCGTCGGAACTGAAGTCCGTGGAAAGCCAACCAACTGTGAA
GCTACAGGTGTCAATAACGCCAAGACATGCTTGAAACATTTGCAAGAATT
AGATGCCAAACCAGCATTGTTGGGAGCTTTCCGACCAGTCTGTCAAGCTA
ATGGACTTTACGCTGAAACACAATGTCATGgTTCCACAGGATTTTGCTTC
TGTGTTGTACCAGAAACTGGCAAAAAGATTTTGGGAACTGAAATTCGTGG
AAAACCAAAATCATGCAGAGCTACAC
Run BLAST on NCBI

transcript from alignment at scaffold_206:195199..202051-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051920 ID=TCONS_00051920|Name=TCONS_00051920|organism=Clytia hemisphaerica|type=transcript|length=6853bp|location=Sequence derived from alignment at scaffold_206:195199..202051- (Clytia hemisphaerica)
AAGTAAATATTATCACAACCTGAACTTGTATAAAACGGGATCTGACCTTG
TGCATCGCTTCACAAGGCTTTGTCGTGTTTACCTATCAACGTAAACAACA
ATTATTTTTTTATAGATATATAATATCTTCTCTTGGATTTGTCGCTTATC
ATTTTACGCTTAACACTCAAAATGAGAACAAGTATTTTTATCTTTTGTCT
CCTATTTGGAGGTAAGTTAATACTTTTGTTCATTCGTTATTTAGTTTTCC
TTTGGTTTTCTTTCCTTTGGATCACTCGAATCTCAGCTCGAATATGTATC
ACTTTTACGCGAACATTTTGTTTTTGTTTTTTAATTTAGGCGAGAACTTG
TTTTGGCGTGGCAGTAACTGATTTAATTTTGGCGAGAACTAATTCGCTGG
CACTAGTTACCTTCGAATAGTGGGGAAATTTGTTTAACTCGAAATACACA
TATACAAGGAATTATAGTTTCAGTTTGATGTGGGATAATTTTGGTTTGAC
ATCTGTTGACATGGCTTACTTAGAAATTGAATGACTTGCTTTTTTATTTT
CAGTAATCTTTGCCAAGTCATGCTTGGACGAGGTTAAAGAATTGGAAGCT
AAACCACCTATGGTTGGCGCTTACAAACCCATCTGCCAAACCAATGGTCT
TTATGCTGAAACACAATACCACGGTAAGTCCTAAGATCGTGTTGGATGAT
CTGGTCTTGGATTGAATAATTGTCTGTTACATTTTTGTATTAATTTTTAC
TACACTTACTTAAAACAAAACGGTGACTTTGAGGTCAAAACAGTACACAT
ATCTTTCTTTTTTAGAACCAAAAGATACACGTTATTTTATAAGAACAATC
TGTATAAAAACATAAGACTTCGGTGGCCAAAATGTTAACCCAAATTTATC
TGGTCCCTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCAGGGGGTTAAAAATCAAAATGTCCAGGGGTAATGCATGA
AAAAAATAATATATCCTCCACCCCCCATGAACGGATTTTTTCTGGAAGAG
CCCATTTCTGGTCGATGTTTAGAAACTCCCATATTTTTATTTTGTCCAGT
TATGTTTTATGTGTTTCATTGTTTCAATGTTCATTGATTAGTTTTGATAA
TCAGGTAGGTCCATAAAAGTATGACTTGTTTTATTTCCGCTTCAAGCGAT
AACTTCGTTTTTTATTTCAGCTAGTTACTATTTCTGTGTCAACCCGAAAA
CTGGTGAAAAGATCTTGGGAACCGATGTTCGTTTCCGAAAACCGTCATCA
TGCAAAACCACACGTAAGAATGCTATTTCTTCATATAGAAAGAAGAAAGA
GCTATAGCCTGGAGATTCATGCTATTACTTCTTCTTTTTATATACTGATG
TTGACATGAAATAGCATGGTTCGGGTTAAGAGTTTGAATTTCCCAGATTC
TAATGACGGTTGAAAACACAACCAATCAAATTTTGTTATTCTGTCACTGG
TCACATTTTCTTAGAGAAAACGCAAGTTCCGAAATTTGGTTTTAATTTCA
GTAAGCGAGGACAGTGCTAAATTCGAATATCCCACTGTAAATTTTTTGAG
GTAGAAATCTGCCTCACAGCTCAAACCCGTCCTGTATATATCAGATTATA
AAAATCTCCTGTCTAGAATAGCTAGAGAAGAAGGAATCCACTATTCGTTA
TTAACCAAGTTTTTGTTTTTGCACTTTTGAGGACAGCGGAATTATTCAAT
CAATTTGGAATAACCCGCAATTTTGACAACACAAACTCGCTATTATTTGA
AATTTACCGGATATCATAATTCAAAATTAATAATTGTTCTAATGTTGTTC
AAATTATTTTCAGCATGTATGTTACAACGTCACCAGGGTATGTTGAACTC
CAAGCAAGGAATGGTCGGTCATTTTACACCACAATGTGAAGAAGACGGTT
CTTTCAAGAAAGTTCAATGTCATGGTATGTTGTAATTTAATCCAATCGAA
ATCTAAAATCCAATTCAAATTTCACCAATATCTAAGATTAGAGAAATGAT
TTATGTTTTTTTACCAGTGGTTAATTTGAATTTTCTAATGAAAAGATTTT
ACGTGTGAACATCCAATTGGGTCGACTTCTGAGATGGACTAGGGTTTTGC
ATGATGCAGATAGACTTCTTTTGGCTTCTAGGCCGAAAATCATACAATGC
TTATTAAACCTTAGAAATTTTCATTAATGACCTGTTTTCTTTATTTATGT
AATACTCTCGGGTACCTAATAGCCGCTCCCCCCCCCCCCCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCC
CCCCCTCCGCTTATTCCAATCCCCCCGGCTATTAGGTACCCGAGAGTATT
TACATATACTTTTGAGATATGAAAAAAAATAATTATTTTTCTTATACAGC
TTCCACTGGCTTTTGTTATTGTGTTGTACCTGAAACTGGAGCTAAAGTCG
TCGGAACTGAAGTCCGTGGAAAGCTAACCAACTGTGAAGCTACAGGTTAA
TTTCAACTTTATGTATTCTTATCATTGTTCACCCTATCTTAAAAAGCCTG
TTAACCGAAAAAAACCTTTTTCCTATATGCCTGATTGTTTACTCAAATTA
CTTTATATGTATTTTTTAGGTGTCAATAACGCCAAGACTTGCTTGAATCA
TTTGCAAGAATTAGATGCCAAACCAGCATTGTTGGGAGCTTTCCGACCAG
TCTGTCAAGCTAATGGACTTTACGCTGAAACTCAATGTCATGGTATATAC
CATTGCATAATTTTGTTTGAATTTTAAAGCCTCTCAACAACATTTTACAG
AGAGGAGGATTTCAATCTTTCATTAATTATCAGATCAAACAGACCTTTTA
GGACTGAATAAAGTCCGTTTTATGTATTATTTATTGAGGAGCATCGGCCG
AGTAGTCAAGGTGTCAGCATCTCAAACCAGGGGTTTGTGATTTGAAGCCC
CCCCTCATTCTAATGTTTCGTTAGGTCTTTTGATAGCCCTGGGGGGGGGG
GTACTAGGGTTAGAGGATGAGGGGTATGTGCGGATGGGACCTATTAAAAC
CGACCCTTAGAGAGACTGATTTTTGCTGAAAAGGTGACCCTTAGAGAGAC
TTTCTTGAAAAGTTTTCTTTGATTTTTGAAAATTTTTTACCCTTATTTTT
CACTCTAAATAAAAAAAAAATCCTAAAAATCGTTTTCCGACCCTTAGAGA
GACTAATTTAAATTTTTCTGATTTTTGCAACTCTTAAAGAGATTTTGTAA
GATGAAAAACCGACCCCTACCGTCTGCACATACCCAGCACCTATTTTTGC
CTAATAACCCCCCTCCTCTGATAAACAGCAGAGTCGACTGGCTGTGGATC
CAGTGAAATCAATCAAAAGGGAAAACGAACGAAAGTAAAAACAATTGAAC
GATTTCTAAAAGCCCTACATTACTGGGCTATCCACGTAAAATATCGGATC
AGTAATCATATTCGTCAACAATTTTGTTTTTTTGTGTTTGTAGGCTCCAC
AGGGTTTTGCTTCTGTGTTGTACCAGAAACTGGCAAAAAGATTTTGGGAA
CTGAAATTCGTGGAAAACCANTAGGTTCCACAGGGTTTTGCTTCTGTGTT
GTACCAGAAACTGGCAAAAAGATTTTGGGAACTGAAATTCGTGGAAAACC
AAAATCATGCAAAGCTACACGTGAGATGCGCTTCAATCTATTTTTCCTTG
TTTAATAGTTGTGTTCTAAAGATTCTTAGACACGAAAGTTTCATTTTATT
ATCATATTGTAAGGTTAACAATCCGTAATTCATAGGGCTAAACCTGCTTG
AGATTGAGGCTTTACCCCTGAGTTGTTTGAAAATAAAAGACAAATCAAGT
AAAAGAAATAATTTGAAAACTTACTGTATACCGTATTTTCTCTGTTCAGC
ACCACTTTCTTTAGAGGCCTGAAATTTACATCTCGTAAATGACATCTCGA
AAATGGAGGAAATTCATTCACATTTTTACGTTTGCAGACTAGAAAGTATA
ATTTATGACTAATTAGTTTTTGTTTTAACTTTCCAGCCTGTTTATTGGCA
CGTCACGAAGGATTATCGAAATCACAAAAAATGATGGTGGGTCATTTCAC
ACCACAATGTGAAGAAGATGGTTCTTTCAAGAAAGTTCAATGTCACGGTA
TGTTGTNACACCACAATGTGAAGAAGATGGTTCTTTCAAGAAAGTCCAAT
GTCATGGTATGTTGTTATTGTCATTCTGGTTGCTAATGATGAGCTATCCC
GTAGGGGGCGCACTCGGTCTAAAAACATTCGGGTCTTGAAATTGGACCCT
GGCAGTACAAAGAAGATTTAACCAAATTTGACCTTTACGGTGTATTTCCT
TGAAAGAATTTCGTCCATTTTTAAAGAAATAATAGTCAGATTTTCCAATG
TTCTGGCCAAGCATCTTCGTTTTTCTTTAATCTTTAAACCCTTTTAGTGC
AATTTTTCTAATTACGACCCTAAACTTTAGGAGTCTTGAAATAACACACC
CTTACAATTTTCTTATACAGCTTCCACTGGCTTTTGTTATTGTGTTGTAC
CTGAAACTGGAGCTAAAGTCGTCGGAACTGAAGTCCGTGGAAAGCCAACC
AACTGTGAAGCTACAGGTTGATTTCAATTATATATCTTCTTTTTATTTAT
CTTATCTTAAAAAAGCCTGTTAACCGAAAAAACTTATTTTATTTTGCCTG
ATTATTTACTCAAATTACTTTACATGTACTTTTAGGTGTCAATAACGCCA
AGACATGCTTGAAACATTTGCAAGAATTAGATGCCAAACCAGCATTGTTG
GGAGCTTTCCGACCAGTCTGTCAAGCTAATGGACTTTACGCTGAAACACA
ATGTCATGGTAAATACCATTGCGTAATTTTGTTTGAATTCAAACGTTTAT
GATAAAATTAAAGCCTCTCAACAACAGTTTACAGGGAGGAGGATTTTATC
ATTCATTATCAGATCAAGCAGATCTTTGACGAATGAATAAAGTCTGTTTT
ATGTATGATTTATTGAGGAGCATTGGCCGAGTAGTCAACCGTCGTCAGCT
CCTCAAACCAGGGGTTCGCGGTTTGATTTGAATCCCATCTCCTTCCAATG
TTCCGTTCTGTTTTTAGATAACAGAGCCGGTTGGCCATGGGCCCATTGAA
AATAATCGAATGACTTTCTAAATGTCCTAATTACTGAGCTATCCACGTAA
AATATTAACTATTGGATTAATAATCATTTTCCTGAAAAAATATTTTTTAT
TCTTTAGGTTCCACAGGATTTTGCTTCTGTGTTGTACCAGAAACTGGCAA
AAAGATTTTGGGAACTGAAATTCGTGGAAAACCAAAATCATGCAGAGCTA
CAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032858XLOC_032858Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051920-exon-scaffold_206-1575043694:201841..202051TCONS_00051920-exon-scaffold_206-1575043694:201841..202051Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1575043694:201379..201498TCONS_00051920-exon-scaffold_206-1575043694:201379..201498Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1575043694:200639..200731TCONS_00051920-exon-scaffold_206-1575043694:200639..200731Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1575043694:199978..200088TCONS_00051920-exon-scaffold_206-1575043694:199978..200088Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1575043694:198057..198152TCONS_00051920-exon-scaffold_206-1575043694:198057..198152Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1575043694:197810..197932TCONS_00051920-exon-scaffold_206-1575043694:197810..197932Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1575043694:196882..196977TCONS_00051920-exon-scaffold_206-1575043694:196882..196977Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1575043694:196405..196515TCONS_00051920-exon-scaffold_206-1575043694:196405..196515Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1575043694:195936..196031TCONS_00051920-exon-scaffold_206-1575043694:195936..196031Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1575043694:195694..195816TCONS_00051920-exon-scaffold_206-1575043694:195694..195816Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1575043694:195199..195294TCONS_00051920-exon-scaffold_206-1575043694:195199..195294Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1510915933:201841..202051TCONS_00051920-exon-scaffold_206-1510915933:201841..202051Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1510915933:201379..201498TCONS_00051920-exon-scaffold_206-1510915933:201379..201498Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1510915933:200639..200731TCONS_00051920-exon-scaffold_206-1510915933:200639..200731Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1510915933:199978..200088TCONS_00051920-exon-scaffold_206-1510915933:199978..200088Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1510915933:198057..198152TCONS_00051920-exon-scaffold_206-1510915933:198057..198152Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1510915933:197810..197932TCONS_00051920-exon-scaffold_206-1510915933:197810..197932Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1510915933:196882..196977TCONS_00051920-exon-scaffold_206-1510915933:196882..196977Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1510915933:196405..196515TCONS_00051920-exon-scaffold_206-1510915933:196405..196515Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1510915933:195936..196031TCONS_00051920-exon-scaffold_206-1510915933:195936..196031Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1510915933:195694..195816TCONS_00051920-exon-scaffold_206-1510915933:195694..195816Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1510915933:195199..195294TCONS_00051920-exon-scaffold_206-1510915933:195199..195294Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1491911889:201841..202051TCONS_00051920-exon-scaffold_206-1491911889:201841..202051Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1491911889:201379..201498TCONS_00051920-exon-scaffold_206-1491911889:201379..201498Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1491911889:200639..200731TCONS_00051920-exon-scaffold_206-1491911889:200639..200731Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1491911889:199978..200088TCONS_00051920-exon-scaffold_206-1491911889:199978..200088Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1491911889:198057..198152TCONS_00051920-exon-scaffold_206-1491911889:198057..198152Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1491911889:197810..197932TCONS_00051920-exon-scaffold_206-1491911889:197810..197932Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1491911889:196882..196977TCONS_00051920-exon-scaffold_206-1491911889:196882..196977Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1491911889:196405..196515TCONS_00051920-exon-scaffold_206-1491911889:196405..196515Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1491911889:195936..196031TCONS_00051920-exon-scaffold_206-1491911889:195936..196031Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1491911889:195694..195816TCONS_00051920-exon-scaffold_206-1491911889:195694..195816Clytia hemisphaericaexon
TCONS_00051920-exon-scaffold_206-1491911889:195199..195294TCONS_00051920-exon-scaffold_206-1491911889:195199..195294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:195199..202051 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.154201	0	0.125256	0	0.726224	0.219807	7.46513	6.90402	37.7932	22.2672	90.6945	129.549	732.637	725.257	850.958	1326.36	117.809	141.336	245.622	288.497	58.6267	54.2654	19.1009	21.5649	26.1447	18.1224	4.5938	7.81181	100.081	94.5872
Blast
[Close]
BLAST of TCONS_00051920 vs. Swiss-Prot (Human)
Match: SMOC1 (SPARC-related modular calcium-binding protein 1 OS=Homo sapiens GN=SMOC1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.795e-26
Identity = 83/262 (31.68%), Postives = 125/262 (47.71%), Query Frame = 1 
Query:  283 KPICQTNGLYAETQYHASYYFCVNPKTGEKILGTDVRFRKPSSCKT---TPCMLQRHQGMLNSKQGMVGHFTPQCEEDGSFKKVQCHASTGFCYCVVPETGAKVVGTEVRGKLTNCEATGVNNAKTCLNHLQELD-AKPALLGAFRPVCQANGLYAETQCHGSTGFCFCVVPETGKKILGTEIRGKPKSCKATPCLLARHEGLSKSQKM-MVGHFTPQCEEDGSFKKVQCHASTGFCYCVVPETGAKVVGTEVRGKPTNCEA 1053
            KPIC ++G   E+        C +P      LG   R R    CK    + C L+R Q +  +K+     F P+C EDGSF +VQCH  TG+C+CV P+ G  + G+ V+ K   C  +  +   +  N  ++ D +KP      +PV   + + A T           V+ ++  K+  T IR    S K   C   R   L ++Q+    G   P+C   G +K VQCH STG+C+CV+ +TG  + GT  R    +CE+
Sbjct:   53 KPICASDGRSYESMCEYQRAKCRDP-----TLGVVHRGR----CKDAGQSKCRLERAQALEQAKKPQEAVFVPECGEDGSFTQVQCHTYTGYCWCVTPD-GKPISGSSVQNKTPVCSGSVTDKPLSQGNSGRKDDGSKPTPTMETQPVFDGDEITAPT-----LWIKHLVIKDS--KLNNTNIRN---SEKVYSCDQERQSALEEAQQNPREGIVIPECAPGGLYKPVQCHQSTGYCWCVLVDTGRPLPGTSTRYVMPSCES 294
The following BLAST results are available for this feature:
BLAST of TCONS_00051920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMOC17.795e-2631.68SPARC-related modular calcium-binding protein 1 OS... [more]
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