TCONS_00051946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051946
Unique NameTCONS_00051946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051946 ID=TCONS_00051946|Name=TCONS_00051946|organism=Clytia hemisphaerica|type=transcript|length=2329bp
CAAACTGTAGGATTTCCTTGCCTTTGAATTCTGTTCTAATTTTCTAGAGT
AAATTGAAGAATTCAAACCCTAACCTATaacacaaaaacattaaaactaa
taattgaaaaaatctaaatctataaatttaaaaaaatgtaacaaAGTTTC
AACGGTTTTCTTCATCGTTTGTTTCTTTATCCACTTTGCTATTAAACGTT
CCGTAAAATGCATACAATAAAATACCGATTACCATCCAAACACCAAACCG
AACCCATGTTATTGTCgaaagttttaacatgagaAAGGTATTAGCGTAAA
TAGCAAGAATTGGTAGCGCGGGAACGCAAGGTGCCATGAAGCCATATTTA
GTACTTGATTGAGGCATTGAATAAATTACAGCCACGGAGGCTATTATCAA
GGTACCAAATATAATAAGTAAAGTTATGGTCCATATTTCTTTACGAACAA
GTTGATCAAATGCGAATAGAATGATACTATTGAATCCGAAAAACCATAAG
AAAAGACAGAGACAAGCACACGTGACTGCTCTCCCTGTGGCTAACGTTGG
CTCACGTCGACCTGGATATTGGTCATTTTGCATTGGTGTGTATGTACCAT
CATTGATTTGTttgaattcttttaatttttgttcgttttcttcttcctcA
TTTTCTGCTGAGTCAGGATTATGTGTTGGTGAATATGTATGTCCACCTTG
TTTCTGTTCGGGTAATTgtaagaaattttcattaaaagatGTCTCAAGCA
TGTTTTTCTCGTCACCACTCACTCGAGGTGTAACACTGGGCGTCCGCCCA
TATTGCGCCTCGTTATCATCATCTTCGCTACCAATGGTGCTTCCGTCATC
AGCTACCAGTGGTTTCATTATTGAATTATCTCCATAGTATTCATCAGGTT
GATACCTGAGGATCAAGACACATAAAGATACTAATGTGTATGCTAACAGA
GTTCCAATGGACATCATCTCCACAAGTTCTTCCAAATCGAATAGTAAAGC
AAAGAATGCGGTCATAATTCCCGGATAGATAGTCGCGTTGACCGGGACTT
CAGTCTTTTCATGAATCTTAGTGAACATATTAAAGAGGAGTCCATCTCTC
GCCATCGCGTATATAATACGTGGTAAGGGAAACAAATTACCTAACAAACT
TGAACTTAAACCACAAATAGCACCAATAGATATGACGTAATGTGCCCAAC
CTAAGCCTCGTTGTGCGAATGCGGCAGGGATGGGGGATAATTTATCCAGC
TCATCATAAGGTATCATCATAGTTATGACAGTAGACACACCAAAGTAACA
CGTGAAGATAATAACAAGAGACGCGACGATAGCGATTGGGATTGATTTAG
AAGGATTAGTTGCTTCTTCTCCAGTTGTTGCGATAATATCGAACCCGACA
AACGCATAAAAACAAGTGGCAGCTCCCGAcaaaacaccggacgcaccgta
CGGGAAGAATCCTTTCCCTTTGGTCCAATTCGTTGGCTCGATGTAAAACA
AACCGACAACGATAATGAAAATAACGACTATGATGTTAAAGATATTGAAC
ATGACCGTAAAGCGTGCAGACTCACGGACACCGAATGCTAACACTATTGT
CACGATAATAGTAAAAACAAAGGATAATATATCTGGGTAATCACCTAGAT
ACGGCGTGTTAAACGCACCGATATTCTCTAACGTCCAATTTCGTACGTGA
AAACCAATCGCGTAATCGAATGATCCCGATAACGCCGCCGCGTCAGCTGC
TGTCCCGATCATATACTCCAAAATCAAGTTCCATCCAATAAAAAACGCCC
ATATTTCTCCGACAGTTACGTAACTATACGTATACGCGCTACCGGTCGTC
TGCGGTACCCGTGATCCAAACTCTGCGTAACATAAACCAGACAGGATTGA
CGTAAGGGCAGCAATGGTAAATGATATAACAACGGCAGGTCCAGCGATGT
TAGCGGCAACTTGCCCCGTAACCACGTACGTACCGGCACCTAACGTGGCt
ccaattcccaaatgtataagtTGACTTGTACTCAGACATTTTGAGAGTGT
TTGTTGGGCAGTTGTTGATTTGGGGTTGATCTTCTTGCGTCGAAAGACAA
CACTGAACCATAAGGAAGTTAGAGCTGTGAAGCTCATTACTGTTTATGCG
GCAAACGTCGAAacaattcttttaattttaactCATACCTaagaaattaa
atgaaattaactATCAATGTCCCATATATTTGCAACTTCTCAATTTCATA
ACCAATTTGACTTGCTTTTAACTCATCGTTATGTGTTAAGGAAAAttaca
aattgaaaatttactttGGTTTGACTCAG
Run BLAST on NCBI

protein sequence of TCONS_00051946-protein

>TCONS_00051946-protein ID=TCONS_00051946-protein|Name=TCONS_00051946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=662bp
MSFTALTSLWFSVVFRRKKINPKSTTAQQTLSKCLSTSQLIHLGIGATLG
AGTYVVTGQVAANIAGPAVVISFTIAALTSILSGLCYAEFGSRVPQTTGS
AYTYSYVTVGEIWAFFIGWNLILEYMIGTAADAAALSGSFDYAIGFHVRN
WTLENIGAFNTPYLGDYPDILSFVFTIIVTIVLAFGVRESARFTVMFNIF
NIIVVIFIIVVGLFYIEPTNWTKGKGFFPYGASGVLSGAATCFYAFVGFD
IIATTGEEATNPSKSIPIAIVASLVIIFTCYFGVSTVITMMIPYDELDKL
SPIPAAFAQRGLGWAHYVISIGAICGLSSSLLGNLFPLPRIIYAMARDGL
LFNMFTKIHEKTEVPVNATIYPGIMTAFFALLFDLEELVEMMSIGTLLAY
TLVSLCVLILRYQPDEYYGDNSIMKPLVADDGSTIGSEDDDNEAQYGRTP
SVTPRVSGDEKNMLETSFNENFLQLPEQKQGGHTYSPTHNPDSAENEEEE
NEQKLKEFKQINDGTYTPMQNDQYPGRREPTLATGRAVTCACLCLFLWFF
GFNSIILFAFDQLVRKEIWTITLLIIFGTLIIASVAVIYSMPQSSTKYGF
MAPCVPALPILAIYANTFLMLKLSTITWVRFGVWMVIGILLYAFYGTFNS
KVDKETNDEENR
Run BLAST on NCBI

transcript from alignment at scaffold_206:78208..80536

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051946 ID=TCONS_00051946|Name=TCONS_00051946|organism=Clytia hemisphaerica|type=transcript|length=2329bp|location=Sequence derived from alignment at scaffold_206:78208..80536 (Clytia hemisphaerica)
CTGAGTCAAACCaaagtaaattttcaatttgtaaTTTTCCTTAACACATA
ACGATGAGTTAAAAGCAAGTCAAATTGGTTATGAAATTGAGAAGTTGCAA
ATATATGGGACATTGATagttaatttcatttaatttcttAGGTATGagtt
aaaattaaaagaattgtTTCGACGTTTGCCGCATAAACAGTAATGAGCTT
CACAGCTCTAACTTCCTTATGGTTCAGTGTTGTCTTTCGACGCAAGAAGA
TCAACCCCAAATCAACAACTGCCCAACAAACACTCTCAAAATGTCTGAGT
ACAAGTCAacttatacatttgggaattggaGCCACGTTAGGTGCCGGTAC
GTACGTGGTTACGGGGCAAGTTGCCGCTAACATCGCTGGACCTGCCGTTG
TTATATCATTTACCATTGCTGCCCTTACGTCAATCCTGTCTGGTTTATGT
TACGCAGAGTTTGGATCACGGGTACCGCAGACGACCGGTAGCGCGTATAC
GTATAGTTACGTAACTGTCGGAGAAATATGGGCGTTTTTTATTGGATGGA
ACTTGATTTTGGAGTATATGATCGGGACAGCAGCTGACGCGGCGGCGTTA
TCGGGATCATTCGATTACGCGATTGGTTTTCACGTACGAAATTGGACGTT
AGAGAATATCGGTGCGTTTAACACGCCGTATCTAGGTGATTACCCAGATA
TATTATCCTTTGTTTTTACTATTATCGTGACAATAGTGTTAGCATTCGGT
GTCCGTGAGTCTGCACGCTTTACGGTCATGTTCAATATCTTTAACATCAT
AGTCGTTATTTTCATTATCGTTGTCGGTTTGTTTTACATCGAGCCAACGA
ATTGGACCAAAGGGAAAGGATTCTTCCCGtacggtgcgtccggtgttttg
TCGGGAGCTGCCACTTGTTTTTATGCGTTTGTCGGGTTCGATATTATCGC
AACAACTGGAGAAGAAGCAACTAATCCTTCTAAATCAATCCCAATCGCTA
TCGTCGCGTCTCTTGTTATTATCTTCACGTGTTACTTTGGTGTGTCTACT
GTCATAACTATGATGATACCTTATGATGAGCTGGATAAATTATCCCCCAT
CCCTGCCGCATTCGCACAACGAGGCTTAGGTTGGGCACATTACGTCATAT
CTATTGGTGCTATTTGTGGTTTAAGTTCAAGTTTGTTAGGTAATTTGTTT
CCCTTACCACGTATTATATACGCGATGGCGAGAGATGGACTCCTCTTTAA
TATGTTCACTAAGATTCATGAAAAGACTGAAGTCCCGGTCAACGCGACTA
TCTATCCGGGAATTATGACCGCATTCTTTGCTTTACTATTCGATTTGGAA
GAACTTGTGGAGATGATGTCCATTGGAACTCTGTTAGCATACACATTAGT
ATCTTTATGTGTCTTGATCCTCAGGTATCAACCTGATGAATACTATGGAG
ATAATTCAATAATGAAACCACTGGTAGCTGATGACGGAAGCACCATTGGT
AGCGAAGATGATGATAACGAGGCGCAATATGGGCGGACGCCCAGTGTTAC
ACCTCGAGTGAGTGGTGACGAGAAAAACATGCTTGAGACatcttttaatg
aaaatttcttacAATTACCCGAACAGAAACAAGGTGGACATACATATTCA
CCAACACATAATCCTGACTCAGCAGAAAATgaggaagaagaaaacgaaca
aaaattaaaagaattcaaACAAATCAATGATGGTACATACACACCAATGC
AAAATGACCAATATCCAGGTCGACGTGAGCCAACGTTAGCCACAGGGAGA
GCAGTCACGTGTGCTTGTCTCTGTCTTTTCTTATGGTTTTTCGGATTCAA
TAGTATCATTCTATTCGCATTTGATCAACTTGTTCGTAAAGAAATATGGA
CCATAACTTTACTTATTATATTTGGTACCTTGATAATAGCCTCCGTGGCT
GTAATTTATTCAATGCCTCAATCAAGTACTAAATATGGCTTCATGGCACC
TTGCGTTCCCGCGCTACCAATTCTTGCTATTTACGCTAATACCTTtctca
tgttaaaactttcGACAATAACATGGGTTCGGTTTGGTGTTTGGATGGTA
ATCGGTATTTTATTGTATGCATTTTACGGAACGTTTAATAGCAAAGTGGA
TAAAGAAACAAACGATGAAGAAAACCGTTGAAACTttgttacattttttt
aaatttatagatttagattttttcaattattagttttaatgtttttgtgt
tATAGGTTAGGGTTTGAATTCTTCAATTTACTCTAGAAAATTAGAACAGA
ATTCAAAGGCAAGGAAATCCTACAGTTTG

Coding sequence (CDS) from alignment at scaffold_206:78208..80536

>TCONS_00051946 ID=TCONS_00051946|Name=TCONS_00051946|organism=Clytia hemisphaerica|type=CDS|length=1989bp|location=Sequence derived from alignment at scaffold_206:78208..80536 (Clytia hemisphaerica)
ATGAGCTTCACAGCTCTAACTTCCTTATGGTTCAGTGTTGTCTTTCGACG
CAAGAAGATCAACCCCAAATCAACAACTGCCCAACAAACACTCTCAAAAT
GTCTGAGTACAAGTCAacttatacatttgggaattggaGCCACGTTAGGT
GCCGGTACGTACGTGGTTACGGGGCAAGTTGCCGCTAACATCGCTGGACC
TGCCGTTGTTATATCATTTACCATTGCTGCCCTTACGTCAATCCTGTCTG
GTTTATGTTACGCAGAGTTTGGATCACGGGTACCGCAGACGACCGGTAGC
GCGTATACGTATAGTTACGTAACTGTCGGAGAAATATGGGCGTTTTTTAT
TGGATGGAACTTGATTTTGGAGTATATGATCGGGACAGCAGCTGACGCGG
CGGCGTTATCGGGATCATTCGATTACGCGATTGGTTTTCACGTACGAAAT
TGGACGTTAGAGAATATCGGTGCGTTTAACACGCCGTATCTAGGTGATTA
CCCAGATATATTATCCTTTGTTTTTACTATTATCGTGACAATAGTGTTAG
CATTCGGTGTCCGTGAGTCTGCACGCTTTACGGTCATGTTCAATATCTTT
AACATCATAGTCGTTATTTTCATTATCGTTGTCGGTTTGTTTTACATCGA
GCCAACGAATTGGACCAAAGGGAAAGGATTCTTCCCGtacggtgcgtccg
gtgttttgTCGGGAGCTGCCACTTGTTTTTATGCGTTTGTCGGGTTCGAT
ATTATCGCAACAACTGGAGAAGAAGCAACTAATCCTTCTAAATCAATCCC
AATCGCTATCGTCGCGTCTCTTGTTATTATCTTCACGTGTTACTTTGGTG
TGTCTACTGTCATAACTATGATGATACCTTATGATGAGCTGGATAAATTA
TCCCCCATCCCTGCCGCATTCGCACAACGAGGCTTAGGTTGGGCACATTA
CGTCATATCTATTGGTGCTATTTGTGGTTTAAGTTCAAGTTTGTTAGGTA
ATTTGTTTCCCTTACCACGTATTATATACGCGATGGCGAGAGATGGACTC
CTCTTTAATATGTTCACTAAGATTCATGAAAAGACTGAAGTCCCGGTCAA
CGCGACTATCTATCCGGGAATTATGACCGCATTCTTTGCTTTACTATTCG
ATTTGGAAGAACTTGTGGAGATGATGTCCATTGGAACTCTGTTAGCATAC
ACATTAGTATCTTTATGTGTCTTGATCCTCAGGTATCAACCTGATGAATA
CTATGGAGATAATTCAATAATGAAACCACTGGTAGCTGATGACGGAAGCA
CCATTGGTAGCGAAGATGATGATAACGAGGCGCAATATGGGCGGACGCCC
AGTGTTACACCTCGAGTGAGTGGTGACGAGAAAAACATGCTTGAGACatc
ttttaatgaaaatttcttacAATTACCCGAACAGAAACAAGGTGGACATA
CATATTCACCAACACATAATCCTGACTCAGCAGAAAATgaggaagaagaa
aacgaacaaaaattaaaagaattcaaACAAATCAATGATGGTACATACAC
ACCAATGCAAAATGACCAATATCCAGGTCGACGTGAGCCAACGTTAGCCA
CAGGGAGAGCAGTCACGTGTGCTTGTCTCTGTCTTTTCTTATGGTTTTTC
GGATTCAATAGTATCATTCTATTCGCATTTGATCAACTTGTTCGTAAAGA
AATATGGACCATAACTTTACTTATTATATTTGGTACCTTGATAATAGCCT
CCGTGGCTGTAATTTATTCAATGCCTCAATCAAGTACTAAATATGGCTTC
ATGGCACCTTGCGTTCCCGCGCTACCAATTCTTGCTATTTACGCTAATAC
CTTtctcatgttaaaactttcGACAATAACATGGGTTCGGTTTGGTGTTT
GGATGGTAATCGGTATTTTATTGTATGCATTTTACGGAACGTTTAATAGC
AAAGTGGATAAAGAAACAAACGATGAAGAAAACCGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032877XLOC_032877Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051946-proteinTCONS_00051946-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051946-exon-scaffold_206-1491911889:78208..80536TCONS_00051946-exon-scaffold_206-1491911889:78208..80536Clytia hemisphaericaexon
TCONS_00051946-exon-scaffold_206-1510915933:78208..80536TCONS_00051946-exon-scaffold_206-1510915933:78208..80536Clytia hemisphaericaexon
TCONS_00051946-exon-scaffold_206-1575043694:78208..80536TCONS_00051946-exon-scaffold_206-1575043694:78208..80536Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:78208..80536 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.167348	0.244786	0.0947399	0.0926882	3.11436	2.90684	11.6828	12.9313	5.95108	5.17044	7.56174	5.34973	4.98614	3.90673	3.21187	8.4335	4.34671	4.50674	4.09157	4.18846	2.13578	2.05984	2.76304	2.45967	2.91072	3.30331	0.619561	0.636723	0.315763	0.151394
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002293AA/rel_permease1
IPR029485CAT_C
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0015171amino acid transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0003333amino acid transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0003333 amino acid transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0015171 amino acid transmembrane transporter activity
Blast
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BLAST of TCONS_00051946 vs. Swiss-Prot (Human)
Match: S7A14 (Probable cationic amino acid transporter OS=Homo sapiens GN=SLC7A14 PE=2 SV=3)

HSP 1 Score: 481.871 bits (1239), Expect = 7.358e-158
Identity = 302/681 (44.35%), Postives = 406/681 (59.62%), Query Frame = -1 
Query:  161 WFSVVFRRKKINPKSTTAQQ---------TLSKCLSTSQLIHLGIGATLGAGTYVVTGQVAANIAGPAVVISFTIAALTSILSGLCYAEFGSRVPQTTGSAYTYSYVTVGEIWAFFIGWNLILEYMIGTAADAAALSGSFDYAIGFHVRNWTLENIGAFNTPYLGD--YPDILSFVFTIIVTIVLAFGVRESARFTVMXXXXXXXXXXXXXXVGLFYIEPTNWTKGKGFFPYGASGVLSGAATCFYAFVGFDIIATTGEEATNPSKSIPIAIVASLVIIFTCYFGVSTVITMMIPYDELDKLSPIPAAFAQRGLGWAHYVISIGAICGLSSSLLGNLFPLPRIIYAMARDGLLFNMFTKIHEKTEVPVNATIYPGIMTXXXXXXXXXXXLVEMMSIGTLLAYTLVSLCVLILRYQPDEYYGDNSIMKPLVADDGSTIGSEDDDNEAQYGRTPSVTPRVSGDE-----------KNMLETSFNENFLQLPEQKQGGHTYSPTHNPDSAXXXXXXXEQK--------LKEFKQINDGTYTPMQNDQYPGRRE-PTLATGRAVTCACLCLFLWFFGFNSIILFAFDQLVRKEXXXXXXXXXXXXXXIASVAVIYSMPQSSTKYGFMAPCVPALPILAIYANTFLMLKLSTITWVRFGVWMVIGILLYAFYGTFNSKVDKETNDE 2110
            W+++  R  +  P  +  +           L++ L+T  LI LG+G+ +G G YVV+G VA  +AGP V++SF IAA+ SILSG+CYAEFG RVP+TTGSAYTYSYVTVGE  AFFIGWNLILEY+IGTAA A+ALS  FD      +  W  +++G  N    G+  YPD+L+ +  +IVTI++A GV+ S  F  + N+ N+ V +FI++ GLF+I    W +G+ F P+G SGVL GAATCFYAF+GFDIIATTGEEA NP+ SIP AI ASLVI  T Y  VS ++T+M+PY  +D  SP+   F   G   A +V++IG++ GL+ SLLG+LFP+PR+IYAMA DGLLF     +   TE PV A I  G + A  ALL  L +L+EMMSIGTLLAYTLVS+CVL+LRYQP+     +  +K L  +          D E +     + +P   GDE           KN+     NE  +     K    TY+  H P+    +     +         +K  K I    YT       PG+ + PT ATG  VT   L LF+  F F S I+F  D +  +  W I L+++   LI   V VI   P++  K  +MAPC+P +P  A+  N +LMLKLSTITW+RF VW  +G+L+Y  YG +NS ++    +E
Sbjct:   19 WYAMHSRILRTKPVESMLEGTGTTTAHGTKLAQVLTTVDLISLGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSLANHTISRWMADSVGTLNGLGKGEESYPDLLALLIAVIVTIIVALGVKNSIGFNNVLNVLNLAVWVFIMIAGLFFINGKYWAEGQ-FLPHGWSGVLQGAATCFYAFIGFDIIATTGEEAKNPNTSIPYAITASLVICLTAYVSVSVILTLMVPYYTIDTESPLMEMFVAHGFYAAKFVVAIGSVAGLTVSLLGSLFPMPRVIYAMAGDGLLFRFLAHVSSYTETPVVACIVSGFLAALLALLVSLRDLIEMMSIGTLLAYTLVSVCVLLLRYQPES--DIDGFVKFLSEEHTKKKEGILADCEKE-----ACSPVSEGDEFSGPATNTCGAKNLPSLGDNEMLI----GKSDKSTYNVNH-PNYGTVDMTTGIEADESENIYLIKLKKLIGPHYYTMRIRLGLPGKMDRPTAATGHTVTICVLLLFILMFIFCSFIIFGSDYISEQSWWAILLVVLMVLLISTLVFVILQQPENPKKLPYMAPCLPFVPAFAMLVNIYLMLKLSTITWIRFAVWCFVGLLIYFGYGIWNSTLEISAREE 686
The following BLAST results are available for this feature:
BLAST of TCONS_00051946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S7A147.358e-15844.35Probable cationic amino acid transporter OS=Homo s... [more]
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