TCONS_00051949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051949
Unique NameTCONS_00051949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051949 ID=TCONS_00051949|Name=TCONS_00051949|organism=Clytia hemisphaerica|type=transcript|length=369bp
CTTTATTgtctttatattttgatttggaaaGTAAGAATTGTTAAGGCTGT
GGCGAAAGAGTTTATCCGCACGGTCATACTTTCGATTTTCAAATACGGAA
CATACGAAACTTAGAATACGGGCATTGTGAGATAACGGTGTTTAATAATC
CCGATCCTGCCACTCCATACTTATTTTTAATTCTCCAGCGGTCAAGATTG
GATGAATTACTTCTTCTCTTgttgtttcttcttcttctttttcatttcag
ttttcatttttatgggAACGCAATTGCGATCATCATATCCAGGTGAGACg
tgtattttccacattttccaaCGTCGTAATATCATAATGACACACATCCA
TTGGCGAGGGCGAGAATAT
Run BLAST on NCBI

transcript from alignment at scaffold_206:145461..145829

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051949 ID=TCONS_00051949|Name=TCONS_00051949|organism=Clytia hemisphaerica|type=transcript|length=369bp|location=Sequence derived from alignment at scaffold_206:145461..145829 (Clytia hemisphaerica)
ATATTCTCGCCCTCGCCAATGGATGTGTGTCATTATGATATTACGACGtt
ggaaaatgtggaaaatacacGTCTCACCTGGATATGATGATCGCAATTGC
GTTcccataaaaatgaaaactgaaatgaaaaagaagaagaagaaacaacA
AGAGAAGAAGTAATTCATCCAATCTTGACCGCTGGAGAATTAAAAATAAG
TATGGAGTGGCAGGATCGGGATTATTAAACACCGTTATCTCACAATGCCC
GTATTCTAAGTTTCGTATGTTCCGTATTTGAAAATCGAAAGTATGACCGT
GCGGATAAACTCTTTCGCCACAGCCTTAACAATTCTTACtttccaaatca
aaatataaagacAATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032880XLOC_032880Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051949-exon-scaffold_206-1491911889:145461..145829TCONS_00051949-exon-scaffold_206-1491911889:145461..145829Clytia hemisphaericaexon
TCONS_00051949-exon-scaffold_206-1510915933:145461..145829TCONS_00051949-exon-scaffold_206-1510915933:145461..145829Clytia hemisphaericaexon
TCONS_00051949-exon-scaffold_206-1575043694:145461..145829TCONS_00051949-exon-scaffold_206-1575043694:145461..145829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_206supercontigscaffold_206:145461..145829 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27137	0	2.13747	0.982495	2.29793	2.29881	3.07537	1.33443	1.59566	1.38868	1.48525	0	1.90516	2.32347	0.859069	0.358321	0.754503	1.87674	1.17855	1.39226	1.45206	0.627422	1.66869	0.924557	0.646694	2.44744	1.12301	0.728375	3.68779	4.05129
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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