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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051981 ID=TCONS_00051981|Name=TCONS_00051981|organism=Clytia hemisphaerica|type=transcript|length=2358bpRun BLAST on NCBI protein sequence of TCONS_00051981-protein >TCONS_00051981-protein ID=TCONS_00051981-protein|Name=TCONS_00051981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp QPQYINSKMAERKSMLQKGGYREPLSPISLSQAASRTPMRKKTSNMTAKTRun BLAST on NCBI transcript from alignment at scaffold_208:523..20465+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00051981 ID=TCONS_00051981|Name=TCONS_00051981|organism=Clytia hemisphaerica|type=transcript|length=19943bp|location=Sequence derived from alignment at scaffold_208:523..20465+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_208:523..20465+ >TCONS_00051981 ID=TCONS_00051981|Name=TCONS_00051981|organism=Clytia hemisphaerica|type=CDS|length=13878bp|location=Sequence derived from alignment at scaffold_208:523..20465+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00051981 vs. Swiss-Prot (Human)
Match: CDC20 (Cell division cycle protein 20 homolog OS=Homo sapiens GN=CDC20 PE=1 SV=2) HSP 1 Score: 389.808 bits (1000), Expect = 8.336e-126 Identity = 189/389 (48.59%), Postives = 262/389 (67.35%), Query Frame = 3
Query: 360 NLNG-EIEKTGARILQMKIKAPQTKEG-EVATKMLYTKSKPTPAKFKSTRHIPSVADKILDAPEIVDDYYLNLLDWGQNGLIAVPLYNAIYLWNSESGTVEELFGESPITDDNIMVTSVKWITEGMHIAVGMSNGNIELWDAAVNKRVRSMGGHPTRVGSLDWNQHILTSGARSGSIFNHDVRVASHHVSSFLHHTQEICGLQWSPNGKLLASGGNDNVLNVWDMASTSNGNATTNDAGVNEVRTPLHSLCEHMAAVKAVSWCPWQRNVLASGGGTVDRHIRIWNAQTGTCLNSLDTMNQISGILWSDTYKEIICSHA---NQMTIWKYPSMTRETELTGHTGRILNITSSPNGVFVASAGADETLRLWKCFEADQKKTRPAKKDDSSR 1511
NLNG ++E+ A+IL++ K EG + K+LY++ + K+ R+IPS+ D+ILDAPEI +DYYLNL+DW ++AV L N++YLW++ SG + +L + ++SV WI EG ++AVG S+ ++LWD KR+R+M H RVGSL WN +IL+SG+RSG I +HDVRVA HHV++ H+QE+CGL+W+P+G+ LASGGNDN++NVW A G PL + +H AVKAV+WCPWQ NVLA+GGGT DRHIRIWN +G CL+++D +Q+ ILWS YKE+I H NQ+ IWKYP+M + EL GHT R+L++T SP+G VASA ADETLRLW+CFE D + R +K +++
Sbjct: 119 NLNGFDVEE--AKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQ---MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG------------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAK 490 The following BLAST results are available for this feature:
BLAST of TCONS_00051981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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