TCONS_00051991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051991
Unique NameTCONS_00051991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051991 ID=TCONS_00051991|Name=TCONS_00051991|organism=Clytia hemisphaerica|type=transcript|length=1478bp
aaataagttaGTTGTAATTGAGGTTGTTTGAAGATATTCAAAAGATGGCA
TCAAAATGGGGTGGTGGCAAGCAGAAAATAAAAGACAGAGACCTGGAtgc
tgaatttgaaaagtttttgaatgaGTCATTGTCTGATGAATCCTTAGCTT
CACCAAGGCGCTCTTTAACATCGAtgacaacaaaacaaaaagctaAAGGA
GCGTTACCCTCGCCTAATGAACAACAGAAGTTCGATAAGCCATGGTGGGC
GACAAGTGAAGATGATGTAACAGCCTCtgaaaatgcaaacaaaaagaaat
gGATCAAAAGCAAAGAAGATACTATAGATGAGGTAGATGGTATAGATGCT
CCAACAAAACAGACCAATAACCCTCTTGCAATGAGCAGAGACAGTTTGGA
TGTGAATAGCAGTCGTCCAGGAACAGCTCTCGATACAATTCTCAGTGAAT
CTGAGCCAAGttaTTCAGAACCAGTGAAAACAGAAACTGATCAAGAACCA
GATGGTGTTGATGCTGGGGGAACACAGTATGAAGAAGATTTTACAGGTAG
TACAAACTCCCAATCCAGTGTATCTGGGAACACTGTCAACCCTTCCTCGA
CAACTCATAACCAAGAAATGGGTATGGAAACACTTGAAGAAATGAAGGAT
AAAGATTTGTTCTTCTCacaacttgaaaaagaaaaacaagatgATATTGA
TTATGGAGAATTGAACCGCAAATTTGACGAAGAAGAGTCAATGACAAACG
AAGGTATGAGTGTCCTTGGTTTACAACCTTACAGACCTCCTCATTATGAT
GACAGTGGGAGTGGAAGTGGAAGTGAAGTTGATGATCAGAAAGTTGATTA
CACGAAAGAAAGCCCAAGTAAATCTCTCCAGTCTCGTGATACTGAAACTC
AGAGAGAAACATCACAGACAAATTCATCCGTACAATCATCACCCACAAGA
AAAGAGAGAAGCTACTCGGAAAAATCAGATGTTGATTCTTTCTTTAGAAG
AGAAGATGAACAAGTTGAACAGAAAGCTGATGAACAATTGAACTTAAACG
AACCTTCCCCGGCAAAGaCGAAGAAGCCAGAAGCTGTCCCTTCACTATTG
TCAAAAGTTTCTTTGATGGAATCTCTGGACTCGACTGCTGGATTTAATCT
TGCTGAAAAGCTTGCACAAAGAAACAAAGAATTCACTGGGAAAGGTAGAC
agagaaagaaattgaaaatttactttaaaaatGATTCGAAAACCACATTC
TTTGCCTAGACATGATGGCAGAATACAATGAAAAACTGAATATTGGTTAA
AAGTGCATAGCGAGTTTAAACAAAATTGTTTGTTTCCTAATAATAAAATA
TCATTGGTCGTGAAGGTACATCACATAACTTTCTATggcaaagaaaaaat
tatgtttataCATCGTGCCAAACGTTATTTGCAATCAGAGTTAGAAACCC
TCTCCTTCCAATGTCCTgctcagttcat
Run BLAST on NCBI

transcript from alignment at scaffold_208:70109..74757-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051991 ID=TCONS_00051991|Name=TCONS_00051991|organism=Clytia hemisphaerica|type=transcript|length=4649bp|location=Sequence derived from alignment at scaffold_208:70109..74757- (Clytia hemisphaerica)
AAATAAGTTAGTTGTAATTGAGGTTGTTTGAAGATATTCAAAAGATGGCA
TCAAAATGGGGTGGTGGCAAGCAGAAAATAAAAGACAGAGACCTGGATGC
TGAATTTGAAAAGTTTTTGAATGAGGTACGTATTGTCTTCATTTTTTCGA
CAAGATAATGGAGCAGAATAATAATTGATTTCATTGATTCTCACCAACAA
AAAACTTTTGCTTTCAGTGTTGAATCTTTTCTGTCTGTGAACGGAAATCT
GTCCAGTTGATATTTTTCACTTACATTATATTGTAAGCCTTGGAAAAAAA
AATTGTAAATGTTTCGCCTAGTTTTGACCTTTCTGTCTGTATTTACCAAA
GGTGCTTACCAACTTTGCTCTACATTTTAGTCATTGTCTGATGAATCCTT
AGCTTCACCAAGGCGCTCTTTAACATCGATGACAACAAAACAAAAAGCTA
AAGGAGCGTTACCCTCGCCTAATGAACAACAGAAGTTCGATAAGCCATGG
TGGGCGACAAGTGAAGATGATGTAACAGCCTCTGAAAATGCAAACAAAAA
GAAATGGATCAAAAGCAAAGAAGATACTATAGTGAGTAACTTTGAAAGAT
AAGATGGTGCTTTAATTGCTGGTGAAAGTTAATGATACAAGAGATATATG
ACAATTGACCTTTCTTCATTTTTACATAAGTGTTCCCGTTTCATATCAGA
CACATATTTCACATCAGGACAGTGTCTGATAGTGTATTGTTATATTATGT
TGATATAGGCAAAAAAATGTTTTTTTCCCTCTTTCTGACAAAATCTTGCT
CCACATCCATGTCAATCCAATGTGAAAAAGCTTGTGAATTAAAATTGATG
AGTAAGCAAACGAAATCGCTTTTATTTAGAAACAAAACCTTTAATGTGTG
TTTACCAAAACTAACTTGTTATCTTTTTCAGGATGAGGTAGATGGTATAG
ATGCTCCAACAAAACAGACCAATAACCCTCTTGCAATGAGCAGAGACAGT
TTGGATGGTAATTCACTTTTCATCTACTCTATCATTGTATTTGACAAGTT
TTCCTGATAGCCTGTTTCCTGTGGACAACAAGTTGATCCTTTACTAACAA
CAACCTTTCGAATATTTTGTATTAGAGAGATGTCAATTTGAATTGAACTT
AAAAATGTAATTCTGTGTTTGTTTTTAGTGAATAGCAGTCGTCCAGGAAC
AGCTCTCGATACAATTCTCAGTGAATCTGAGCCAAGGTATGATTTCTGTT
GACTGAATTATTTTTAAGGATACAAGTCTATAGAGAACTTACTGCTGTAT
ATTGTGTCTACTTTACATTTTCTCATGTAGACCTCGATTAACTTCATGTT
ATTTTAAAGATATATTTTTTTTATGAAATAGAAAGTTGAAGTGCCTTTAT
GCTGACGAAGCAGAAAAAAAAGAGAATTGCCCAAAATTTGTGCTCGCGAG
TCTGAATGGGGAGAAAGTGGTCCTTATATTAATGCTATTTCAGCAAATTA
TAGGAGATACATAAAATAATGTATATATGTTTAAATAACTTTTTTCTTCA
GTTATTCAGAACCAGTGAAAACAGAAACTGATCAAGAACCAGATGGTGTT
GATGCTGGGGGAACACAGTATGAAGAAGATTTTACAGGTTGGTTTTGTTT
ATTTTAATTTGTTTTATTTATCCTTTAGTTTTTGTGATCCCTTCTGATCC
CTTTGCTTTTTCTTTACATATCTTTTGAGTCGTATTTGATCCTTTATAAC
TACTCTGTATAATTCTAGATTGTGGTAATCCATTAACAAAGACAACTTAT
CCCTCTCCATTTATTTTCTTTCCACTATTATATCTTTTTTCTATGCTTTG
TTTTTCTCTATCTGCTTTTTGCCTTTCCTCTTTTTTGACAAAATCAACGT
CAAAACAATCGAAAACAATTGAGTGGTTATTAAAAAGATTAAAACATTCT
TTATATCTTATTAACTCTCTCTTAATAATTTAATCTCTTGATAACTTATA
TTATTGATCATTGTCTGAATAATCTCCCAAGCTGTTAGACAAGGTACGGT
GTTCATATTAGAAATAGCAAATACTTCACCATTAGCAATGATGGACATTT
CCTTTCATGACTTTCAGGTAGTACAAACTCCCAATCCAGTGTATCTGGGA
ACACTGTCAACCCTTCCTCGACAACTCATAACCAAGAAATGGGTATGGAA
ACACTTGAAGAAATGAAGGATAAAGATTTGTTCTTCTCACAACTTGAAAA
AGAAAAACAAGATGATATTGATTATGGAGAATTGAACCGCAAATTTGACG
AAGAAGAGTCAATGTAATTATTCACACTTTGTTGTTTTAACTCGATTCTA
TTTTTCCATAAAGATGAGTAAAGGTAACGCGTACACTTGGAGTTGAACAA
CCAGAAACCTTGAATGGTGAAATTTCTTGACACAACTCCGATGTGATCGA
GTCTTCTGATTGGTAAGAGAATTTTAACTGAGCTCAAAGAATCTGCCTGC
TTTATATCCTGTTCCATAAATTTCCATACAGGGGGGAGGGTAGACGAACC
TTTTCAAATGAAAAACAAATTACTTAAAAAAGTGTAGATACCCCCTGGAA
AATGGCAAAATTTGCAAAAGAACCCTTGGAAAAAATTATTTTTGTGTCTT
AAAGTGAGGGTGAATGAACTAAAATCAGTTGTTCACCCCCTGGAAATTCT
AGAATAACTTTTTACCCCCTGGAAAAATGAAAAAATACTTCTTTAGACCC
CCTGGAAATGTTCATCCACCCCCTGTATGGTCATAAAATGGAATTTTTCA
CTAATGTCCTATTACTTTTCACCATTATCTTTGATTATCTTTAAGGACAA
ACGAAGGTATGAGTGTCCTTGGTTTACAACCTTACAGACCTCCTCATTAT
GATGACAGTGGGAGTGGAAGTGGAAGTGAAGTTGATGATCAGAAAGTTGA
TTACACGAAAGGTAATTATTAAAAGGCTTTATTAAACAAATTGATTTAGA
GTTTACTTTTCAAAATTCAATTTTGGGTTTACAAATTTTTCTCAACTTCA
TCAGTGGAGCTAGAACCTCAGAATGTCTGTCTGTGTATCTGTACGTCTGT
CTGTCACCTCAAAACTTTGGGACAGGTTTAATTTTTTCAAAATTTTTGTT
TCAAGGGTTAAAAGGTTTAGCCCAAAACGAGGCTTTAAAAAAATGTCTTG
CATGAAAAATTTTCTGTCAATGTTTACAATTGGGCCTACAAGTAATTTAA
AAGATACTGAAGTTGAGCCAGTGCAGTTAGCACGTTCGACAGTTTATGTT
ATCAGAAATTAGCAGAAGCAGTTCAGGTCGATATAATTTCAAAATTTTCA
TGTAATATGACTGGCTCCCTGGTAACTTCTGGGCCTACTATTCTAGTACC
CTTCATTGTTTTGACAAATAAAATTATGAAATTTATTAAAGACTCATATT
CAACATGCCAATATAGATATTAAATTGAATATGATGTGTGATTTTATATT
GTTTTTGTTTTTCCTTCCTTAGCAGAAAGCCCAAGTAAATCTCTCCAGTC
TCGTGATACTGAAACTCAGAGAGAAACATCACAGACAAATTCATCCGTAC
AATCATCACCCACAAGAAAAGAGAGAAGCTACTCGGAAAAATCAGATGTT
GATTCTTTCTTTAGAAGAGAAGATGAACAAGTTGAACAGAAAGCTGATGA
ACAATTGAACTTAAACGAACCTTCCCCGGCAAAGGTAATTTTGTAGTAAA
GATTTTACAATAGGTGCTGGTGAAAAATCTAATAGTTTTATATCTCGAAG
TTTTTAAAGCCTTCTTCACGAACAGTTCTCTTTTAAAACCGCTCGTCGTA
AACGGTTTCCCGTTTGCAATGAATCATAAATGATATCCTTTTTTATGATA
TAAAAAGGAGGCCCGCCTTTTTTGCTTACACTTCAGAATAATCAATAAGG
GGCGTGGGCGTGGGCGTGGCAGTGGGAGAAAGTTGTTCTTTGTTTTTTTT
AAAATGCCTTGTAAGCCAATACTTGGCGATTACGTTAAATGGTGTCCTTC
AAGTTACTTTAGTTTTTTATTTGACTTTTTTTTCAGACGAAGAAGCCAGA
AGCTGTCCCTTCACTATTGTCAAAAGGTATTGGCACTTTGTTTCGTAGCT
AGGTCTTGGTCCAAATTAGGTTTTATTTAGTTTTAAAGCATCCTTGACAT
TAAGAAGTACATTTTAACAGCCTCCATAATATTGCATACCATTTCATAAT
ATTACCCTACACGTTTTTACCTCTGCAGTTTCTTTGATGGAATCTCTGGA
CTCGACTGCTGGATTTAATCTTGCTGAAAAGCTTGCACAAAGAAACAAAG
AATTCACTGGGAAAGGTAGACAGAGAAAGAAATTGAAAATTTACTTTAAA
AATGATTCGAAAACCACATTCTTTGCCTAGACATGATGGCAGAATACAAT
GAAAAACTGAATATTGGTTAAAAGTGCATAGCGAGTTTAAACAAAATTGT
TTGTTTCCTAATAATAAAATATCATTGGTCGTGAAGGTACATCACATAAC
TTTCTATGGCAAAGAAAAAATTATGTTTATACATCGTGCCAAACGTTATT
TGCAATCAGAGTTAGAAACCCTCTCCTTCCAATGTCCTGCTCAGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032910XLOC_032910Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051991-exon-scaffold_208-1575043694:74633..74757TCONS_00051991-exon-scaffold_208-1575043694:74633..74757Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1575043694:74177..74377TCONS_00051991-exon-scaffold_208-1575043694:74177..74377Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1575043694:73751..73826TCONS_00051991-exon-scaffold_208-1575043694:73751..73826Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1575043694:73522..73579TCONS_00051991-exon-scaffold_208-1575043694:73522..73579Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1575043694:73121..73206TCONS_00051991-exon-scaffold_208-1575043694:73121..73206Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1575043694:72445..72640TCONS_00051991-exon-scaffold_208-1575043694:72445..72640Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1575043694:71797..71912TCONS_00051991-exon-scaffold_208-1575043694:71797..71912Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1575043694:71024..71232TCONS_00051991-exon-scaffold_208-1575043694:71024..71232Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1575043694:70632..70671TCONS_00051991-exon-scaffold_208-1575043694:70632..70671Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1575043694:70109..70479TCONS_00051991-exon-scaffold_208-1575043694:70109..70479Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1510915933:74633..74757TCONS_00051991-exon-scaffold_208-1510915933:74633..74757Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1510915933:74177..74377TCONS_00051991-exon-scaffold_208-1510915933:74177..74377Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1510915933:73751..73826TCONS_00051991-exon-scaffold_208-1510915933:73751..73826Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1510915933:73522..73579TCONS_00051991-exon-scaffold_208-1510915933:73522..73579Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1510915933:73121..73206TCONS_00051991-exon-scaffold_208-1510915933:73121..73206Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1510915933:72445..72640TCONS_00051991-exon-scaffold_208-1510915933:72445..72640Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1510915933:71797..71912TCONS_00051991-exon-scaffold_208-1510915933:71797..71912Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1510915933:71024..71232TCONS_00051991-exon-scaffold_208-1510915933:71024..71232Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1510915933:70632..70671TCONS_00051991-exon-scaffold_208-1510915933:70632..70671Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1510915933:70109..70479TCONS_00051991-exon-scaffold_208-1510915933:70109..70479Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1491911889:74633..74757TCONS_00051991-exon-scaffold_208-1491911889:74633..74757Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1491911889:74177..74377TCONS_00051991-exon-scaffold_208-1491911889:74177..74377Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1491911889:73751..73826TCONS_00051991-exon-scaffold_208-1491911889:73751..73826Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1491911889:73522..73579TCONS_00051991-exon-scaffold_208-1491911889:73522..73579Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1491911889:73121..73206TCONS_00051991-exon-scaffold_208-1491911889:73121..73206Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1491911889:72445..72640TCONS_00051991-exon-scaffold_208-1491911889:72445..72640Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1491911889:71797..71912TCONS_00051991-exon-scaffold_208-1491911889:71797..71912Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1491911889:71024..71232TCONS_00051991-exon-scaffold_208-1491911889:71024..71232Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1491911889:70632..70671TCONS_00051991-exon-scaffold_208-1491911889:70632..70671Clytia hemisphaericaexon
TCONS_00051991-exon-scaffold_208-1491911889:70109..70479TCONS_00051991-exon-scaffold_208-1491911889:70109..70479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_208supercontigscaffold_208:70109..74757 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.400435	0.291649	6.57571	6.27134	2.50412	1.78601	0.23271	0.444399	0.460675	2.93703e-05	0.0377583	0.102925	0.0703526	0.0507157	0	0.0447386	0	0	0.0501107	0.0843329	0	0.0645689	0	0.281151	0.00867509	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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