|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052005 ID=TCONS_00052005|Name=TCONS_00052005|organism=Clytia hemisphaerica|type=transcript|length=1545bp
CTGTCTGctaaattttacagaatagaaaaattcaaactggtctttatttt
attaaactttgaaaggaccccagtatcaaaacgtacgtggtacgtctctc
gacctgtatatatgacgtacgtggtacgtctctcggcttctaaaggttaa
aagaaaaataattttcctgaatttttcaaaagctCAATCAAAACCAATTG
AATAACTACACTTTCGCCTCGATTATTCTTTTTGTTTCCGCCAGGTGGGC
CTCTCGCCAACTCTTCGTCGATTTGTTTACCATAATAATATTAATATGCT
GAAAACTTCATGCATGTCGCCCTgaaggaaagaagaaagatgaattgtga
aatcaaaaaaatctttaaaatcttttcTCGAAACACCATCTGCGAAATTT
AACTTAAACTTAAATTTTCTAATCGACTGCGGTCGAACAATAATGATTTT
TGAATTCTCCGTTTCAGTGCTGGCAGTGCTGGACTGCCACGTTGGCCTCT
CCCTCCTTCGTTGGTTTGCTGTCAGTTATGATTGGCTTTCAATAGTTTCA
TAACTATCAAATTTAAGATTCTCAAAACGCCCATTTTCATAACAAAGCTA
TAAACCATATCATCTTTTGGGTTCCAGCAAACCTTTTTTCTTGGAATGAG
AAATGTATCCAGATTTAGGATTGTTTTCACTCAACAAAGTCACTTTTTGG
TCTGACATATTGAAGAAGAAAGACTTTGATATCTGTAAGAGTCTGTGAAA
CATTGTGGGGAGTATCTGCCGAGTGTGCTGTGTGAAAGGTAGTCAAAGTT
ATCTCTCGACCTCTGTCTCCAAAAGTTTTCTCTGTCTATTTCACCATCTT
GACCTAAGAAGTTTGGTTTTACCATGAAGGGGTGTTCTGGCTAGCCTGTA
ACAGGTTCCCAAATCATGTCTCTATTTATAGGTAGCATTATCAGTATTGA
ATGGTCCTCTAGGTTATAAAAAAGCCAATTCAGTTGCCTTTTGATCGACT
GTCATCAGCTGTTCAATATCCACGTACGATTTGTCTCTTTCGTTTTCATC
TTTTTATATCACTAAATTGAACTTGTATTTTGTTTTCGGTCCGATTGTTG
TACAAGCGAACTTTGATGCTGTTGACCCTgagaaatgatggaatcaaatc
TATCATGTATCATCGGTACCTATGTAACATCGAGTGTGATTAATTACATg
ttggaaacagatatttccGTCCGTCTAAGGAAAAATTATGCGGTAAACGA
AGCAtaagttctcaacttcagttgagctacaatctgacaatgtctgcgtg
tctgtctgtctgtcacaaaaactttagggcagcctggagactttcaaaat
gcttggatttggctgaaatttggcacacttgttccttgggtgaatatctg
ggggtggttttttcatttgaaaattttgatttttggagcctggggacgat
tttttcgccaaaacgaggctaaaactttgggtcagcctggagacttcaaa
aattctaGTGAATTTTCACGGTTAAGAGTTATATATTATCTGCAC Run BLAST on NCBI transcript from alignment at scaffold_208:40008..41552 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052005 ID=TCONS_00052005|Name=TCONS_00052005|organism=Clytia hemisphaerica|type=transcript|length=1545bp|location=Sequence derived from alignment at scaffold_208:40008..41552 (Clytia hemisphaerica)
GTGCAGATAATATATAACTCTTAACCGTGAAAATTCACtagaatttttga
agtctccaggctgacccaaagttttagcctcgttttggcgaaaaaatcgt
ccccaggctccaaaaatcaaaattttcaaatgaaaaaaccacccccagat
attcacccaaggaacaagtgtgccaaatttcagccaaatccaagcatttt
gaaagtctccaggctgccctaaagtttttgtgacagacagacagacacgc
agacattgtcagattgtagctcaactgaagttgagaacttaTGCTTCGTT
TACCGCATAATTTTTCCTTAGACGGACggaaatatctgtttccaacATGT
AATTAATCACACTCGATGTTACATAGGTACCGATGATACATGATAgattt
gattccatcatttctcAGGGTCAACAGCATCAAAGTTCGCTTGTACAACA
ATCGGACCGAAAACAAAATACAAGTTCAATTTAGTGATATAAAAAGATGA
AAACGAAAGAGACAAATCGTACGTGGATATTGAACAGCTGATGACAGTCG
ATCAAAAGGCAACTGAATTGGCTTTTTTATAACCTAGAGGACCATTCAAT
ACTGATAATGCTACCTATAAATAGAGACATGATTTGGGAACCTGTTACAG
GCTAGCCAGAACACCCCTTCATGGTAAAACCAAACTTCTTAGGTCAAGAT
GGTGAAATAGACAGAGAAAACTTTTGGAGACAGAGGTCGAGAGATAACTT
TGACTACCTTTCACACAGCACACTCGGCAGATACTCCCCACAATGTTTCA
CAGACTCTTACAGATATCAAAGTCTTTCTTCTTCAATATGTCAGACCAAA
AAGTGACTTTGTTGAGTGAAAACAATCCTAAATCTGGATACATTTCTCAT
TCCAAGAAAAAAGGTTTGCTGGAACCCAAAAGATGATATGGTTTATAGCT
TTGTTATGAAAATGGGCGTTTTGAGAATCTTAAATTTGATAGTTATGAAA
CTATTGAAAGCCAATCATAACTGACAGCAAACCAACGAAGGAGGGAGAGG
CCAACGTGGCAGTCCAGCACTGCCAGCACTGAAACGGAGAATTCAAAAAT
CATTATTGTTCGACCGCAGTCGATTAGAAAATTTAAGTTTAAGTTAAATT
TCGCAGATGGTGTTTCGAgaaaagattttaaagatttttttgatttcaca
attcatctttcttctttccttcAGGGCGACATGCATGAAGTTTTCAGCAT
ATTAATATTATTATGGTAAACAAATCGACGAAGAGTTGGCGAGAGGCCCA
CCTGGCGGAAACAAAAAGAATAATCGAGGCGAAAGTGTAGTTATTCAATT
GGTTTTGATTGagcttttgaaaaattcaggaaaattatttttcttttaac
ctttagaagccgagagacgtaccacgtacgtcatatatacaggtcgagag
acgtaccacgtacgttttgatactggggtcctttcaaagtttaataaaat
aaagaccagtttgaatttttctattctgtaaaatttagCAGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052005-exon-scaffold_208-1491911889:40008..41552 | TCONS_00052005-exon-scaffold_208-1491911889:40008..41552 | Clytia hemisphaerica | exon |
| TCONS_00052005-exon-scaffold_208-1510915933:40008..41552 | TCONS_00052005-exon-scaffold_208-1510915933:40008..41552 | Clytia hemisphaerica | exon |
| TCONS_00052005-exon-scaffold_208-1575043694:40008..41552 | TCONS_00052005-exon-scaffold_208-1575043694:40008..41552 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_208 | supercontig | scaffold_208:40008..41552 . |
Blast
The following BLAST results are available for this feature:
|
