TCONS_00052081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052081
Unique NameTCONS_00052081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length994

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052081 ID=TCONS_00052081|Name=TCONS_00052081|organism=Clytia hemisphaerica|type=transcript|length=994bp
GATTGCTCTATCATGACACAAAAGAGGGTTATTGTCATGCAAATGAAGCC
CATTCTTTCTCACTGCAAATGAAATTTAGATAATAAATAGGGAACTTTTG
AAGGTTTTAAAATCAGTTTTCACTAATTCAGTAAGTGATTCAGCTGTTAT
CAAAATGGTCAGAATTGTGCTGCTTGTCGTATTTCTTGTCATTGCTTCTG
ATATACAAGGAAGAGTACAAGAAAAACGTATTATCCATGGAACCGAGGCT
AAACCAGGTGCATGGCCTTGGGTCGTCTTACTGCAAATAAAATCACAAGG
CAAAACAAGTAACTGTGGTGGCACTATTTTGTCCAAGACTTGGatAATGA
CAGCCGCTCATTGCTTTAAAAGTAAACCTGCTGCTTCAGATATCCTGGTA
GTAGCCGGTGCACAAAATATCAAAGTTCATGAAGAGTCACAACAAAGAAT
TACGGCTAAAAGATATGTTGTGAACCCAGGATATAATCCCCCCGCTAAAG
AAGCAGACATTGCTTTGATCGAACTATCGACTCCCTTGAAATTCAATAAA
CGAGTTGAACAAGCTCGTATTCAAGCAAAAGACGAGTATCCAAGTCTGGA
AAAGACTTGTTTTATCGCTGGCTGGGGTCGAACCAGCGTTGATCCAATTG
TTAGACCTGACACCTTACAAGAAGCACAACTCCCAATCCTTCCAGAACGT
TTAGCCTTTGAAGAATTTATCTATGCAGGATTTAAGGACGGTGACACGAA
ACCTAACGCATGTTATGGTGATTCTGGTGGTCCATTGATGTGTAAAACAA
CCTTTCTTAGAAGATGGGTTGTTCAAGGACCAATAAGTCATTCGAGTGTA
GGAGATTGTATGTATGATACTGCAGTTATACCAGTGGCCAAGTATTTGAG
CTGGGTTAAACAATTCGTTAAAGATCTGAAGACTCAGAATTGATTAATAT
GacatgaaatgaaaatgaaccTACAGTCATATGATTGTTTATAC
Run BLAST on NCBI

protein sequence of TCONS_00052081-protein

>TCONS_00052081-protein ID=TCONS_00052081-protein|Name=TCONS_00052081-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MVRIVLLVVFLVIASDIQGRVQEKRIIHGTEAKPGAWPWVVLLQIKSQGK
TSNCGGTILSKTWIMTAAHCFKSKPAASDILVVAGAQNIKVHEESQQRIT
AKRYVVNPGYNPPAKEADIALIELSTPLKFNKRVEQARIQAKDEYPSLEK
TCFIAGWGRTSVDPIVRPDTLQEAQLPILPERLAFEEFIYAGFKDGDTKP
NACYGDSGGPLMCKTTFLRRWVVQGPISHSSVGDCMYDTAVIPVAKYLSW
VKQFVKDLKTQN
Run BLAST on NCBI

transcript from alignment at scaffold_21:78754..81550-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052081 ID=TCONS_00052081|Name=TCONS_00052081|organism=Clytia hemisphaerica|type=transcript|length=2797bp|location=Sequence derived from alignment at scaffold_21:78754..81550- (Clytia hemisphaerica)
GATTGCTCTATCATGACACAAAAGAGGGTTATTGTCATGCAAATGAAGCC
CATTCTTTCTCACTGCAAATGAAATTTAGATAATAAATAGGGAACTTTTG
AAGGTTTTAAAATCAGTTTTCACTAATTCAGTAAGTGATTCAGCTGTTAT
CAAAATGGTCAGAATTGTGCTGCTTGTCGTATTTCTTGTCATTGCTTCTG
GTAAGTTCATACAACCTTTGTAATTATTTGACATTTTCAACGGATACGAT
CTAATAAATCATTCTCTATCCTAGGCATCTGACGAGTAGACGTTTTTTTA
TAAGAACAATTTTATAAAAACAAGATGCTGAAAATCGATCAAAATCTTGA
ACCTTAGAACAAATTAAGAACAATCTGGCAATCCTTTAATATATAATTGA
ACACGTTTAGGTTTCTTTTGGTATAAGTTTTACCTTTCACGAAAATTAAT
TTCTTATTTTGAAGCTTATGAGTTGGGAAAACATAAGTTCGAATCTTCAA
GATTATTATTTTTTGGCTTAATTCTTTAGATATACAAGGAAGAGTACAAG
AAAAACGTATTATCCATGGAACCGAGGCTAAACCAGGTGCATGGCCTTGG
GTCGTCTTACTGCAAATAAAATCACAAGGCAAAACAAGTAACTGTGGTGG
CACTATTTTGTCCAAGACTTGGGTATGTCGTAAGCTTAAAAATTCTAATT
ATAAAACCCAAAAAATTATGGTTTGAAATTATTACACTTACATTCCCGGA
AAAAGGTTGTAGACTTTTCAAAAATACAGGAAAAATTTCAAAATAAGCTC
TGAAAACCCATTTTTACCAGGGCCAATGTTGTATTTATTGGATTTGGAGG
GTTGGGTGACAAGTCCAGAAGCCAAATCCACTCGACATCGAAGGAAATGC
CATTCGTGTGCCTGAAGTTCACCCATTTTCAAGTATTTGGAAGTCTGAAT
ATCACAAGGACTAAAGCCATAGGGATTGCTAGCAAGCCTGTATGTGTCTT
CTGCCAAATAACCACTTGTGGTTCATTTGGGGAATGTCCAAAGTGTTAAA
AGGGCTTTTTTTTGGCACTATTGAGTAATTTTTGAAAAGTCTACAGACCT
TTTGTCCGGGATTGTAGAAATTGGCACATAATGAGAGTTATCGTTGAACC
TAGTTTTAATTGGTGGGGGAAAGAGACGACCTAGTCAAGGAACCAATGCC
TTCATCTATAATTAACTTAACACTGCATTTTCTCTTTTGGAATTTATGAA
TTTTGTATATGAATTTTAGAAAATTTCTGTATACTTTCTTGAAACTTTAA
ACTTCGCTAATTTTGAATATGAATTCAGAATTTTCGTACCCAGACGGCAC
ACGACGTCAAAGCAACGTCCATTTGACATTCATAACGTCCAAATAACGTT
ATTTGAACGTTAAAACGACATTGTGTGCCAGTTGGGTATCTTCCTGGAAA
TATAAGTTACAGCCAAAATCAAAATTTTTTCATAGATAATGACAGCCGCT
CATTGCTTTAAAAGTAAACCTGCTGCTTCAGATATCCTGGTAGTAGCCGG
TGCACAAAATATCAAAGTTCATGAAGAGTCACAACAAAGAATTACGGCTA
AAAGATATGTTGTGAACCCAGGATATAATCCCCCCGCTAAAGAAGCAGAC
ATTGCTTTGATCGAACTATCGACTCCCTTGAAATTCAATAAACGAGTTGA
ACAAGCTCGTATTCAAGCAAAAGACGAGTATCCAAGTCTGGAAAAGACTT
GTTTTATCGCTGGTAAGGCCTTGGTATTTAGGTTATTTTAAGACCAACAT
TTTAACTTTTCCCATTGTCCATTGAGGCTGAGTTAAAGTCAGAATTTTAC
TTTGTCAGACGATTGAGAAAAAGTTTGATTCACTAGATATAAATTGGCAT
TATATTATGGCTCACTCTCGAATTTCTCCTGAAAAGTACGCAATAACTAC
AATTGACGCTCTCGATTTCGATTTTCAAGGAGAATTAGATTTTCATCGAA
TAAGCAAGCGTATCGAATGTTTATAAGAGTTTTTTGTTCACGGTGACTTT
CAATATTATCGAATGATAGAGCGCATCGAATAGTAGAACGTCGGAAACAA
TCAAAAACAAATCGTAAAAATTTTACTTACGCGCTTAAAAAAAAGAAAGA
AAGAATCGTGTTTTTATTCTTACGGTATATTCTAAGGTTAGGATCCAACC
CAGCCTAAATCTAGCATGTGATGCATACCTCGAGTAAAGATTGGGCATTT
ATTTGAAAACTTTTAGCGTTACTGGGGTATGATTGGCAATTTACAGGTAA
GATGCTCTAAAAATTGGCATTCTTAGTTTCAGTTGGCAAATTCCGTGGTA
TTCTTAGCATATTCTTAATTTTTGCCCAATTTCATCATAAATATTCTTAT
AAAGTATATTCTTTTTTGGATAGGCTGGGGTCGAACCAGCGTTGATCCAA
TTGTTAGACCTGACACCTTACAAGAAGCACAACTCCCAATCCTTCCAGAA
CGTTTAGCCTTTGAAGAATTTATCTATGCAGGATTTAAGGACGGTGACAC
GAAACCTAACGCATGTTATGGTGATTCTGGTGGTCCATTGATGTGTAAAA
CAACCTTTCTTAGAAGATGGGTTGTTCAAGGACCAATAAGTCATTCGAGT
GTAGGAGATTGTATGTATGATACTGCAGTTATACCAGTGGCCAAGTATTT
GAGCTGGGTTAAACAATTCGTTAAAGATCTGAAGACTCAGAATTGATTAA
TATGACATGAAATGAAAATGAACCTACAGTCATATGATTGTTTATAC

Coding sequence (CDS) from alignment at scaffold_21:78754..81550-

>TCONS_00052081 ID=TCONS_00052081|Name=TCONS_00052081|organism=Clytia hemisphaerica|type=CDS|length=3156bp|location=Sequence derived from alignment at scaffold_21:78754..81550- (Clytia hemisphaerica)
GCTGGGGTCGAACCAGCGTTGATCCAATTGTTAGACCTGACACCTTACAA
GAAGCACAACTCCCAATCCTTCCAGAACGTTTAGCCTTTGAAGAATTTAT
CTATGCAGGATTTAAGGACGGTGACACGAAACCTAACGCATGTTATGGTG
ATTCTGGTGGTCCATTGATGTGTAAAACAACCTTTCTTAGAAGATGGGTT
GTTCAAGGACCAATAAGTCATTCGAGTGTAGGAGATTGTATGTATGATAC
TGCAGTTATACCAGTGGCCAAGTATTTGAGCTGGGTTAAACAATTCGTTA
AAGATCTGAAGACTCAGAATTGAATAATGACAGCCGCTCATTGCTTTAAA
AGTAAACCTGCTGCTTCAGATATCCTGGTAGTAGCCGGTGCACAAAATAT
CAAAGTTCATGAAGAGTCACAACAAAGAATTACGGCTAAAAGATATGTTG
TGAACCCAGGATATAATCCCCCCGCTAAAGAAGCAGACATTGCTTTGATC
GAACTATCGACTCCCTTGAAATTCAATAAACGAGTTGAACAAGCTCGTAT
TCAAGCAAAAGACGAGTATCCAAGTCTGGAAAAGACTTGTTTTATCGCTG
ATATACAAGGAAGAGTACAAGAAAAACGTATTATCCATGGAACCGAGGCT
AAACCAGGTGCATGGCCTTGGGTCGTCTTACTGCAAATAAAATCACAAGG
CAAAACAAGTAACTGTGGTGGCACTATTTTGTCCAAGACTTGGATGGTCA
GAATTGTGCTGCTTGTCGTATTTCTTGTCATTGCTTCTGGCTGGGGTCGA
ACCAGCGTTGATCCAATTGTTAGACCTGACACCTTACAAGAAGCACAACT
CCCAATCCTTCCAGAACGTTTAGCCTTTGAAGAATTTATCTATGCAGGAT
TTAAGGACGGTGACACGAAACCTAACGCATGTTATGGTGATTCTGGTGGT
CCATTGATGTGTAAAACAACCTTTCTTAGAAGATGGGTTGTTCAAGGACC
AATAAGTCATTCGAGTGTAGGAGATTGTATGTATGATACTGCAGTTATAC
CAGTGGCCAAGTATTTGAGCTGGGTTAAACAATTCGTTAAAGATCTGAAG
ACTCAGAATTGAATAATGACAGCCGCTCATTGCTTTAAAAGTAAACCTGC
TGCTTCAGATATCCTGGTAGTAGCCGGTGCACAAAATATCAAAGTTCATG
AAGAGTCACAACAAAGAATTACGGCTAAAAGATATGTTGTGAACCCAGGA
TATAATCCCCCCGCTAAAGAAGCAGACATTGCTTTGATCGAACTATCGAC
TCCCTTGAAATTCAATAAACGAGTTGAACAAGCTCGTATTCAAGCAAAAG
ACGAGTATCCAAGTCTGGAAAAGACTTGTTTTATCGCTGATATACAAGGA
AGAGTACAAGAAAAACGTATTATCCATGGAACCGAGGCTAAACCAGGTGC
ATGGCCTTGGGTCGTCTTACTGCAAATAAAATCACAAGGCAAAACAAGTA
ACTGTGGTGGCACTATTTTGTCCAAGACTTGGATGGTCAGAATTGTGCTG
CTTGTCGTATTTCTTGTCATTGCTTCTGGCTGGGGTCGAACCAGCGTTGA
TCCAATTGTTAGACCTGACACCTTACAAGAAGCACAACTCCCAATCCTTC
CAGAACGTTTAGCCTTTGAAGAATTTATCTATGCAGGATTTAAGGACGGT
GACACGAAACCTAACGCATGTTATGGTGATTCTGGTGGTCCATTGATGTG
TAAAACAACCTTTCTTAGAAGATGGGTTGTTCAAGGACCAATAAGTCATT
CGAGTGTAGGAGATTGTATGTATGATACTGCAGTTATACCAGTGGCCAAG
TATTTGAGCTGGGTTAAACAATTCGTTAAAGATCTGAAGACTCAGAATTG
AATAATGACAGCCGCTCATTGCTTTAAAAGTAAACCTGCTGCTTCAGATA
TCCTGGTAGTAGCCGGTGCACAAAATATCAAAGTTCATGAAGAGTCACAA
CAAAGAATTACGGCTAAAAGATATGTTGTGAACCCAGGATATAATCCCCC
CGCTAAAGAAGCAGACATTGCTTTGATCGAACTATCGACTCCCTTGAAAT
TCAATAAACGAGTTGAACAAGCTCGTATTCAAGCAAAAGACGAGTATCCA
AGTCTGGAAAAGACTTGTTTTATCGCTGATATACAAGGAAGAGTACAAGA
AAAACGTATTATCCATGGAACCGAGGCTAAACCAGGTGCATGGCCTTGGG
TCGTCTTACTGCAAATAAAATCACAAGGCAAAACAAGTAACTGTGGTGGC
ACTATTTTGTCCAAGACTTGGATGGTCAGAATTGTGCTGCTTGTCGTATT
TCTTGTCATTGCTTCTGGCTGGGGTCGAACCAGCGTTGATCCAATTGTTA
GACCTGACACCTTACAAGAAGCACAACTCCCAATCCTTCCAGAACGTTTA
GCCTTTGAAGAATTTATCTATGCAGGATTTAAGGACGGTGACACGAAACC
TAACGCATGTTATGGTGATTCTGGTGGTCCATTGATGTGTAAAACAACCT
TTCTTAGAAGATGGGTTGTTCAAGGACCAATAAGTCATTCGAGTGTAGGA
GATTGTATGTATGATACTGCAGTTATACCAGTGGCCAAGTATTTGAGCTG
GGTTAAACAATTCGTTAAAGATCTGAAGACTCAGAATTGAATAATGACAG
CCGCTCATTGCTTTAAAAGTAAACCTGCTGCTTCAGATATCCTGGTAGTA
GCCGGTGCACAAAATATCAAAGTTCATGAAGAGTCACAACAAAGAATTAC
GGCTAAAAGATATGTTGTGAACCCAGGATATAATCCCCCCGCTAAAGAAG
CAGACATTGCTTTGATCGAACTATCGACTCCCTTGAAATTCAATAAACGA
GTTGAACAAGCTCGTATTCAAGCAAAAGACGAGTATCCAAGTCTGGAAAA
GACTTGTTTTATCGCTGATATACAAGGAAGAGTACAAGAAAAACGTATTA
TCCATGGAACCGAGGCTAAACCAGGTGCATGGCCTTGGGTCGTCTTACTG
CAAATAAAATCACAAGGCAAAACAAGTAACTGTGGTGGCACTATTTTGTC
CAAGACTTGGATGGTCAGAATTGTGCTGCTTGTCGTATTTCTTGTCATTG
CTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032986XLOC_032986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052081-exon-scaffold_21-1575043694:81351..81550TCONS_00052081-exon-scaffold_21-1575043694:81351..81550Clytia hemisphaericaexon
TCONS_00052081-exon-scaffold_21-1575043694:80879..81021TCONS_00052081-exon-scaffold_21-1575043694:80879..81021Clytia hemisphaericaexon
TCONS_00052081-exon-scaffold_21-1575043694:79789..80065TCONS_00052081-exon-scaffold_21-1575043694:79789..80065Clytia hemisphaericaexon
TCONS_00052081-exon-scaffold_21-1575043694:78754..79127TCONS_00052081-exon-scaffold_21-1575043694:78754..79127Clytia hemisphaericaexon
TCONS_00052081-exon-scaffold_21-1510915933:81351..81550TCONS_00052081-exon-scaffold_21-1510915933:81351..81550Clytia hemisphaericaexon
TCONS_00052081-exon-scaffold_21-1510915933:80879..81021TCONS_00052081-exon-scaffold_21-1510915933:80879..81021Clytia hemisphaericaexon
TCONS_00052081-exon-scaffold_21-1510915933:79789..80065TCONS_00052081-exon-scaffold_21-1510915933:79789..80065Clytia hemisphaericaexon
TCONS_00052081-exon-scaffold_21-1510915933:78754..79127TCONS_00052081-exon-scaffold_21-1510915933:78754..79127Clytia hemisphaericaexon
TCONS_00052081-exon-scaffold_21-1491911889:81351..81550TCONS_00052081-exon-scaffold_21-1491911889:81351..81550Clytia hemisphaericaexon
TCONS_00052081-exon-scaffold_21-1491911889:80879..81021TCONS_00052081-exon-scaffold_21-1491911889:80879..81021Clytia hemisphaericaexon
TCONS_00052081-exon-scaffold_21-1491911889:79789..80065TCONS_00052081-exon-scaffold_21-1491911889:79789..80065Clytia hemisphaericaexon
TCONS_00052081-exon-scaffold_21-1491911889:78754..79127TCONS_00052081-exon-scaffold_21-1491911889:78754..79127Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052081-proteinTCONS_00052081-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:78754..81550 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.406751	0.264431	0.716403	0.500634	0.426632	0.722422	2.90524	3.5902	5.30995	2.75399	3.61726	2.34775	0.710449	1.06131	34.8582	37.712	1.49554	0.591166	0.6726	0.351914	0.13109	0	0.207277	0.376889	0.873421	0.129918	3.91315	2.96257	0.0501625	0.0511076
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR033116TRYPSIN_SER
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
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BLAST of TCONS_00052081 vs. Swiss-Prot (Human)
Match: CEL2A (Chymotrypsin-like elastase family member 2A OS=Homo sapiens GN=CELA2A PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.415e-32
Identity = 76/249 (30.52%), Postives = 121/249 (48.59%), Query Frame = 2 
Query:  227 RIIHGTEAKPGAWPWVVLLQIKSQGK-TSNCGGTILSKTWIMTAAHCFKSKPAASDILVVAGAQNIKVHEESQQRITAKRYVVNPGYNPP--AKEADIALIELSTPLKFNKRVEQARIQAKDEYPSLEKTCFIAGWGRTSVDPIVRPDTLQEAQLPILPERLAFE----------EFIYAGFKDGDTKPNACYGDSGGPLMCKTTFLRRWVVQGPISHSSVGDCMY---DTAVIPVAKYLSWVKQFVKD 925
            R++ G EA+P +WPW V LQ  S GK    CGG++++ +W++TAAHC  S   +    V  G  N+ V E     ++  + VV+  +N    +K  DIAL++L+ P+    +++ A +            C++ GWGR   +  V PD LQ+ +L ++                   I AG   GD   ++C GDSGGPL C+ +   RW V G +S  S   C Y    +    V+ Y+ W+   + +
Sbjct:   28 RVVGGEEARPNSWPWQVSLQYSSNGKWYHTCGGSLIANSWVLTAAHCISS---SRTYRVGLGRHNLYVAESGSLAVSVSKIVVHKDWNSNQISKGNDIALLKLANPVSLTDKIQLACLPPAGTILPNNYPCYVTGWGRLQTNGAV-PDVLQQGRLLVVDYATCSSSAWWGSSVKTSMICAG---GDGVISSCNGDSGGPLNCQASD-GRWQVHGIVSFGSRLGCNYYHKPSVFTRVSNYIDWINSVIAN 268
The following BLAST results are available for this feature:
BLAST of TCONS_00052081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CEL2A5.415e-3230.52Chymotrypsin-like elastase family member 2A OS=Hom... [more]
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