TCONS_00052086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052086
Unique NameTCONS_00052086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052086 ID=TCONS_00052086|Name=TCONS_00052086|organism=Clytia hemisphaerica|type=transcript|length=1495bp
atttagaatccgaaaaataagaaaatggtATTCAAATTCAAAGAGCCAAT
TGTGGACAAAGGATTATGTTGGTTAATGTTAGCTATGGTCTTTACCATAT
ACTTCGTTCTGATTGGGACATTTTTTTCCTATGGTGTTTGGCTGCCAAGA
GTTATGGAAGAATTTAATTGTAATCAAGAACAAGCTGCCTGGGTTGCTTC
GATTGCAACTGGTCTACTTGTACTATTGGCACTACCTTCAGACCTGGCAT
GTCATTACTTTGGTGTATTCAACATGTCAATATGCGGATCATTGTTGTGT
GGCATTGGCATGATCATATCATCTTATCTCCAGAACATTTATCATCTCTA
TTTATCATTTGGGGTTTTGATGGGGATTGGCTCCTCATTATTGTATACAC
CAACCTTGGTGATGATGGGTAGATGGTTCCACAAATATCAAGCTCTGTCA
ACAACTATTGTAATGGTTGGAGCACCATCAGGATCTTTAGTATTCAATAT
CATCACAGAGAAAATCATGCAGAATTTCAAACTACGTTCGGTTATGGTTG
TCTATGGGATATGTTTGATGTGTATTACACTTGTCTGTTCGTTCGGATAT
ATGCCGTTTAGTCCAACTTTCATAGAAAAGAGGTCAAATATTGAGAACAA
AGAAGAGGCAAAAGGACAAGACTCATTGGAAATTGGCAGTGGATTTGAAT
TCAGAGCGTCGCTGTTAAAGAATGAAGCATATTGGCTTTACAATGTATCT
CGATTCTTCTCAGTTCTCGCCCACTACGTTCCAATGTTTCACCTTATCAA
ATATGCGATGACGATGGGGATTAGTAGTTCAACAGCCAGTATCATGTTAG
CTGTTTGGTCTGGAAGTAATTTCATTGGTCGATTAGGATTTGGTATTTTT
GCTTCCAAATACCGCTCAAAGGTCCCTATCACCTATCAGATAGTGCTATT
TATGACGAGCTTGGTGTGCGCTGCGGCCTTTTTCGCTGAAACCGCCTGGA
GTCTTTTCCTCTATTGCTTCATATATGGGGTATGCGAGGGCGCTATAGTT
GGTATAGCCAGTATTCTAACCATTGATTTAACTTGTTTACGAGATTTGGG
AGCAGCTTGGGGTATACAACAAACTATCAATGGCATTCCAACCATTGCTG
GCCCTGTTCTGATTGGTGCAATGAACGATGCCAATTTGTTccgtccaaat
ttcatgtttatctTTACCGGTGGTACGTTTCTTGTCAGTACTGTATTCAT
GCATTTAGCAAGAACTATTCACAATAGAAGAAATAAAATATCTaaagaag
aagaacatcaaTCACAAATCGAATGAAATTGCGATAAGCAAGAACATCAA
CGAATAAGAACTCAGAAAACAAAACCAGCTGATTCCTTGCTGAGAAAAAg
gcccaattttttatttttttaatagtAAAATATAGTAAAACATAGTAACT
TTTTGAATATCTTAACTTGTTATTCACTGAAAAAGCATAataaaa
Run BLAST on NCBI

protein sequence of TCONS_00052086-protein

>TCONS_00052086-protein ID=TCONS_00052086-protein|Name=TCONS_00052086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=433bp
MVFKFKEPIVDKGLCWLMLAMVFTIYFVLIGTFFSYGVWLPRVMEEFNCN
QEQAAWVASIATGLLVLLALPSDLACHYFGVFNMSICGSLLCGIGMIISS
YLQNIYHLYLSFGVLMGIGSSLLYTPTLVMMGRWFHKYQALSTTIVMVGA
PSGSLVFNIITEKIMQNFKLRSVMVVYGICLMCITLVCSFGYMPFSPTFI
EKRSNIENKEEAKGQDSLEIGSGFEFRASLLKNEAYWLYNVSRFFSVLAH
YVPMFHLIKYAMTMGISSSTASIMLAVWSGSNFIGRLGFGIFASKYRSKV
PITYQIVLFMTSLVCAAAFFAETAWSLFLYCFIYGVCEGAIVGIASILTI
DLTCLRDLGAAWGIQQTINGIPTIAGPVLIGAMNDANLFRPNFMFIFTGG
TFLVSTVFMHLARTIHNRRNKISKEEEHQSQIE
Run BLAST on NCBI

transcript from alignment at scaffold_21:158097..163533-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052086 ID=TCONS_00052086|Name=TCONS_00052086|organism=Clytia hemisphaerica|type=transcript|length=5437bp|location=Sequence derived from alignment at scaffold_21:158097..163533- (Clytia hemisphaerica)
ATTTAGAATCCGAAAAATAAGAAAATGGTATTCAAATTCAAAGAGCCAAT
TGTGGACAAAGGATTATGTTGGTTAATGTTAGCTATGGTCTTTACCATAT
ACTTCGTTCTGATTGGGACATTTTTTTCCTATGGTGTTTGGCTGCCAAGA
GTTATGGAAGAATTTAATTGTAATCAAGAACAAGCTGGTAAGAATGATAT
CTCTTTATTGTTAGAAAGATATTTCAGATATTTGGTCTATAAAGTAAGTA
GTAAGTTTGTGAGCGCAGTCGAGGGCGAAGGCTCCCTTTTCTCTAGCTGT
CTACGCAAATCTAGGGGAGGGTGCTACTCCTTCCCTTGTATTACTCCACT
TACCTTTGATCCGTCTCCTTAATTGTTGAACATCAAGCAGAGAGGCATCA
CGAGTACTACTTTGGGAATCTTTGGTATGACCCGGCTGGGGGTTGAACCC
AATGAAGTATAAGCCCGAAGGGCTAGAAGTCAATCTCTTTGGTAGGATTT
GAAGCCAACAAATCCTACCAAAGTTGCGCGGCCTTGAGCCTCCCGCCTGG
TTTTTACACAAATGATTGAAACTAAAATTTACCGCTTAATTTCGAAAAAT
ATATCACTCAAAAACAAAGGAATTGCTAGATTCAATCCGTCATCAAAAAT
ACGGCGCATATTTTAAGGCTTCAATTTTTCTTGTCTGAGAAAGGTTAGAG
ATTGACCTCTAGCCCTTCGGGCTTGAAACTCAATGGTTGAACCCACAACC
TTGCACACCGTAGCTCAACCTTCATGCTACGGCCGCTAGCATGAAAGATA
TAAAGGTTATTCAAAAATCTTAAGCAAAATCCACCCCCTCCTTTATAGAT
GTCCCTCCTTTGTAGATGCACTTTCTCTTTAATGCACTCATCTTTTTAGA
AATCTAACCCTCCTTGGATGAACTAGCGTAAATCTGTGAAGGGTTCAGTA
ATTTAAAACCACAGTTTCCATAATAATTAATAAACGCAACTGGAAAATCC
TCAGTTTAGTATAATCACCATTTGTCATTAAAGTTGAGAGGCATTCTTAG
TTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
AAATGTTTTTGAAAGTTCCCTTTTTTGTCTTAATTCTGCTGTATTAGCCT
CCTTTTCAAACATTTTCCACCCAGGACATTTTTATTCCAAACCCCCCGCT
TATTAAATTTTGAGATTTTTTTCAACCCCCCGGCTATTAGGTACCCGAGA
GTACAAGATTACTTCCATTTTACAATTAATTTATGTGGTAAGGATAGCAC
TTAGTCAGTCAATTTCTATTTCTACATCCTCGCAAGAGCCCCCATAGATA
TCATGCATATCTTTGAAAAATTCCAAATCACGCATCACGACTCAAATCAC
GATCACGTTTTGACCCCTGATCACGCAAAAAAATTCCAAATCACGTAATC
ACGCTAGAAAAGAGTCCCTAACACGTCATCACGCAAACGGCTTGGGGGGC
CTTTCGCAACACAAGAAAGGGTTGGATTAGCAAAAGAAAATCCTTATACT
TAGCTGACCTTTCAAAATGAAAGTCCTAAATTTTCTAAGATAAAGAAATT
CATTCATTTTATTAAGCTTTCACTGAAAGATTTTAAAGCTGCTATTTTAC
GTTTGTAAAAAGTGTGAACATACCATGCAGGGGGCGGGGTACAGAGGCAG
GGTACTAACCCATAGGGTACTAACTTGATTTTTTACGAAAATTTTGTTTA
GTACCACCCACCCATATTTAGTACCGGGTACTACTTCATTTTTGCTGTAA
AAAATAGAGACACCAACCCTAAAATCTTAAATTTTACAGATTAGACCAAG
AGAGGGGTACTATTGTTCGTTTTTCAGACTGAAAATTGACAGATAATTCA
AGCAAACTATCAATGATGGAGTCAGAAGCTTTTGTCCTTTGATTTTCATC
GCACACTTCTTAACCATTTTGGAAGTTTTGTCTTCAAAAAAATCAAAAAA
TTTCTCAAAAGAGTAAAAAGAATTGTCGATTAAAAAAGATTTCAAATAAA
AAAAATCAATATTTGGAAAAAGTCAAAATATTTCAACAAACTACTTTTTT
TATTGAAAAACAGCAAAATTCTGTGAAAAAGTACCCAAATAGTATCCTGT
ACTTGCTTGAAGAGTGAAAAATATACACCCCCACCCCCAAAGTAGTACCG
GGTACTAACTTTTTTGAAATGCAAAAATAGACACCACCACCTGGCTATGG
GTCAGTACCCTGTGTCTGTAACCCCACCCTGTACCATGAGGTTTCAAAGA
ATATTAAAGCTAACAAGTGACTTATATGGACATACCTGACATATCAACAG
AAAACATGAAATTTATAATAAACAAGACGTCAAACAATCTCGGAAAACCA
CTTTTTATTACCGGATCGGTCGACCGGAAAAAATGTTTTTCTTGTTATCA
TGAAAATTTGACCCCATTACATTTTGGAATTACTATTTTGCTTCATTGTG
CAAAAAATCTACATAATCCTATTAGCTAATATCGAGAAAAGCTAATAACG
AACGAATGAACGAACAAGCACTGGTTAATTTATTGGTAGGTCCAAAAACT
ATTTCAAAATCAGACAGAAGATTTCCATACGGATTAGCGATACAACCCTG
TATATCATCAACCTCAACCAAGTGTAACAGTGAACTCTCCAGAAAATACA
ATGACTCTCTCGACAATTTGGCAAGGGATAAGAATTTTCTTTAAATTAGA
GAAGGTTCGAATTACAGAGAGTAATTCAAACCACTTTCCACCTGAGGGGA
CCAATTTTTTAGTTCGAGTTACAGAAATACTTAAATAATAGAGTTTCGAA
TTAGAGAGGGTAATCCTACAATTAGAAAAGAAGATCTGATGTAAGTCTAA
CTCTCTTTATTAACCCAAGTAAAAATTCTGTATGTAGACTTTGAGTATCA
GTGCACCAATAAGCCAAAACAAAACAACAAGCCTGTAAACCTTTGTGTTC
AATTTTTAGCCTGGGTTGCTTCGATTGCAACTGGTCTACTTGTACTATTG
GCACTACCTTCAGACCTGGCATGTCATTACTTTGGTGTATTCAACATGTC
AATATGCGGATCATTGTTGTGTGGCATTGGCATGATCATATCATCTTATC
TCCAGAACATTTATCATCTCTATTTATCATTTGGGGTTTTGATGGGGATT
GGCTCCTCATTATTGTATACACCAACCTTGGTGATGATGGGTAGATGGTT
CCACAAATATCAAGCTCTGTCAACAACTATTGTAATGGTTGGAGCACCAT
CAGGATCTTTAGTATTCAATATCATCACAGAGAAAATCATGCAGAATTTC
AAACTACGTTCGGTTATGGTTGTCTATGGGATATGTTTGATGTGTATTAC
ACTTGTCTGTTCGTTCGGATATATGCCGTTTAGTCCAACTTTCATAGAAA
AGAGGTCAAATATTGAGAACAAAGAAGAGGCAAAAGGACAAGACTCATTG
GAAATTGGCAGTGGATTTGAATTCAGAGCGTCGCTGTTAAAGAATGAAGC
ATATTGGCTTTACAATGTATCTCGATTCTTCTCAGTTCTCGCCCACTACG
TTCCAATGTTTCACCTTGTAAGTTTTTAACACAATTTTTCTACAGTGAAA
TTCCCATAACTCCAACACGCAGATAGGCCACATTTCCAACGGGATTGTTT
TATTTAAAGGCTTGTATGGGATATATAGTAATGGGCCAGTGTTAGTAATC
CTCTATACAAGTTGAAAAAGATAAGTAAGCGTCAAAATAAGGTTAGCAAA
AATGTATTTATTTAAAAGTTTTATTTTAATTTGGTTACATATCCTTTTTA
GGTTTTCCAAAATATTGATTCAGGGTTTTATCTGCGATTTCCTCTAAAAT
TTAACCTTGAAAATTATTTACTTTCACTTTAAGATCAAATATGCGATGAC
GATGGGGATTAGTAGTTCAACAGCCAGTATCATGTTAGCTGTTTGGTCTG
GAAGTAATTTCATTGGTCGATTAGGATTTGGTATTTTTGCTTCCAAATAC
CGCTCAAAGGTCCCTATCACCTATCAGATAGTGCTATTTATGACGAGCTT
GGTGTGCGCTGCGGCCTTTTTCGCTGAAACCGCCTGGAGTCTTTTCCTCT
ATTGCTTCATATATGGGGTATGCGAGGGCGCTATAGTTGGTATAGCCAGT
ATTCTAACCATTGATTTAACTTGTTTACGAGATTTGGGAGCAGCTTGGGG
TATACAACAAACTATCAATGGCATTCCAACCATTGCTGGCCCTGTTCTGA
TTGGTAAGTGATTGTGTTATTATACTGTGTTGTGCGAAGTGAGAAGGGGT
TGTGGGTAGTAGGTTTTTGAGGTGATTGGGTATGCCTGAGCTAAAAAATC
GAAAATTGACTCTTTAAGAGAAATAAAATAGAACCTTAGTGTGCTTAAGT
ATGACTTTCTGAGAGATTTTTCTCAAAGTTTGTTTAACAATAAATCTTGG
TCTAAAAATTACTGAAATCGTAGCCAGAGTGTCAGGCATGATGTATAACC
TCCGTTCAACAGGTTTTCGCTACACCTATATAAACATGAATAAATACCAT
AACACATATTTTTCATTCTCTCAAGAACTTTATATCAAAGACCACATACG
GCATTAATAAAATATTTTTCTCTTTTAAATAGGTGCAATGAACGATGCCA
ATTTGTTCCGTCCAAATTTCATGTTTATCTTTACCGGTGGTACGTTTCTT
GTCAGTACTGTATTCATGCATTTAGCAAGAACTATTCACAATAGAAGAAA
TAAAATATCTAAAGAAGAAGAACATCAATCACAAATCGAATGAAATTGCG
TAAGTATTCCCTTGTTCGGTAGAGGTGCATTTCTATTCAATTTTAGTGAA
ATTTCATGAGGAAAATATATTTTTTTAAATCCTAAAGAAAACTGATAATC
CAAGTTCGGATTCGAAGGGAAGTATCGACGTACTGAAGATTGAACCTCCT
CAAAAGGTGGTATAGGATTATTTCAGTACAAGAAAACAAATACATTGACA
AAGATTTTATAAGGAACACTCGTAAACCTATCAACATTCTGCAATATTTG
AACTTTTGCACCTATTATCTTTAGGATAAGCAAGAACATCAACGAATAAG
AACTCAGAAAACAAAACCAGCTGATTCCTTGCTGAGAAAAAGGCCCAATT
TTTTATTTTTTTAATAGTAAAATATAGTAAAACATAGTAACTTTTTGAAT
ATCTTAACTTGTTATTCACTGAAAAAGCATAATAAAA

Coding sequence (CDS) from alignment at scaffold_21:158097..163533-

>TCONS_00052086 ID=TCONS_00052086|Name=TCONS_00052086|organism=Clytia hemisphaerica|type=CDS|length=5208bp|location=Sequence derived from alignment at scaffold_21:158097..163533- (Clytia hemisphaerica)
GTGCAATGAACGATGCCAATTTGTTCCGTCCAAATTTCATGTTTATCTTT
ACCGGTGGTACGTTTCTTGTCAGTACTGTATTCATGCATTTAGCAAGAAC
TATTCACAATAGAAGAAATAAAATATCTAAAGAAGAAGAACATCAATCAC
AAATCGAATGAATCAAATATGCGATGACGATGGGGATTAGTAGTTCAACA
GCCAGTATCATGTTAGCTGTTTGGTCTGGAAGTAATTTCATTGGTCGATT
AGGATTTGGTATTTTTGCTTCCAAATACCGCTCAAAGGTCCCTATCACCT
ATCAGATAGTGCTATTTATGACGAGCTTGGTGTGCGCTGCGGCCTTTTTC
GCTGAAACCGCCTGGAGTCTTTTCCTCTATTGCTTCATATATGGGGTATG
CGAGGGCGCTATAGTTGGTATAGCCAGTATTCTAACCATTGATTTAACTT
GTTTACGAGATTTGGGAGCAGCTTGGGGTATACAACAAACTATCAATGGC
ATTCCAACCATTGCTGGCCCTGTTCTGATTGCCTGGGTTGCTTCGATTGC
AACTGGTCTACTTGTACTATTGGCACTACCTTCAGACCTGGCATGTCATT
ACTTTGGTGTATTCAACATGTCAATATGCGGATCATTGTTGTGTGGCATT
GGCATGATCATATCATCTTATCTCCAGAACATTTATCATCTCTATTTATC
ATTTGGGGTTTTGATGGGGATTGGCTCCTCATTATTGTATACACCAACCT
TGGTGATGATGGGTAGATGGTTCCACAAATATCAAGCTCTGTCAACAACT
ATTGTAATGGTTGGAGCACCATCAGGATCTTTAGTATTCAATATCATCAC
AGAGAAAATCATGCAGAATTTCAAACTACGTTCGGTTATGGTTGTCTATG
GGATATGTTTGATGTGTATTACACTTGTCTGTTCGTTCGGATATATGCCG
TTTAGTCCAACTTTCATAGAAAAGAGGTCAAATATTGAGAACAAAGAAGA
GGCAAAAGGACAAGACTCATTGGAAATTGGCAGTGGATTTGAATTCAGAG
CGTCGCTGTTAAAGAATGAAGCATATTGGCTTTACAATGTATCTCGATTC
TTCTCAGTTCTCGCCCACTACGTTCCAATGTTTCACCTTATGGTATTCAA
ATTCAAAGAGCCAATTGTGGACAAAGGATTATGTTGGTTAATGTTAGCTA
TGGTCTTTACCATATACTTCGTTCTGATTGGGACATTTTTTTCCTATGGT
GTTTGGCTGCCAAGAGTTATGGAAGAATTTAATTGTAATCAAGAACAAGC
TGGTGCAATGAACGATGCCAATTTGTTCCGTCCAAATTTCATGTTTATCT
TTACCGGTGGTACGTTTCTTGTCAGTACTGTATTCATGCATTTAGCAAGA
ACTATTCACAATAGAAGAAATAAAATATCTAAAGAAGAAGAACATCAATC
ACAAATCGAATGAATCAAATATGCGATGACGATGGGGATTAGTAGTTCAA
CAGCCAGTATCATGTTAGCTGTTTGGTCTGGAAGTAATTTCATTGGTCGA
TTAGGATTTGGTATTTTTGCTTCCAAATACCGCTCAAAGGTCCCTATCAC
CTATCAGATAGTGCTATTTATGACGAGCTTGGTGTGCGCTGCGGCCTTTT
TCGCTGAAACCGCCTGGAGTCTTTTCCTCTATTGCTTCATATATGGGGTA
TGCGAGGGCGCTATAGTTGGTATAGCCAGTATTCTAACCATTGATTTAAC
TTGTTTACGAGATTTGGGAGCAGCTTGGGGTATACAACAAACTATCAATG
GCATTCCAACCATTGCTGGCCCTGTTCTGATTGCCTGGGTTGCTTCGATT
GCAACTGGTCTACTTGTACTATTGGCACTACCTTCAGACCTGGCATGTCA
TTACTTTGGTGTATTCAACATGTCAATATGCGGATCATTGTTGTGTGGCA
TTGGCATGATCATATCATCTTATCTCCAGAACATTTATCATCTCTATTTA
TCATTTGGGGTTTTGATGGGGATTGGCTCCTCATTATTGTATACACCAAC
CTTGGTGATGATGGGTAGATGGTTCCACAAATATCAAGCTCTGTCAACAA
CTATTGTAATGGTTGGAGCACCATCAGGATCTTTAGTATTCAATATCATC
ACAGAGAAAATCATGCAGAATTTCAAACTACGTTCGGTTATGGTTGTCTA
TGGGATATGTTTGATGTGTATTACACTTGTCTGTTCGTTCGGATATATGC
CGTTTAGTCCAACTTTCATAGAAAAGAGGTCAAATATTGAGAACAAAGAA
GAGGCAAAAGGACAAGACTCATTGGAAATTGGCAGTGGATTTGAATTCAG
AGCGTCGCTGTTAAAGAATGAAGCATATTGGCTTTACAATGTATCTCGAT
TCTTCTCAGTTCTCGCCCACTACGTTCCAATGTTTCACCTTATGGTATTC
AAATTCAAAGAGCCAATTGTGGACAAAGGATTATGTTGGTTAATGTTAGC
TATGGTCTTTACCATATACTTCGTTCTGATTGGGACATTTTTTTCCTATG
GTGTTTGGCTGCCAAGAGTTATGGAAGAATTTAATTGTAATCAAGAACAA
GCTGGTGCAATGAACGATGCCAATTTGTTCCGTCCAAATTTCATGTTTAT
CTTTACCGGTGGTACGTTTCTTGTCAGTACTGTATTCATGCATTTAGCAA
GAACTATTCACAATAGAAGAAATAAAATATCTAAAGAAGAAGAACATCAA
TCACAAATCGAATGAATCAAATATGCGATGACGATGGGGATTAGTAGTTC
AACAGCCAGTATCATGTTAGCTGTTTGGTCTGGAAGTAATTTCATTGGTC
GATTAGGATTTGGTATTTTTGCTTCCAAATACCGCTCAAAGGTCCCTATC
ACCTATCAGATAGTGCTATTTATGACGAGCTTGGTGTGCGCTGCGGCCTT
TTTCGCTGAAACCGCCTGGAGTCTTTTCCTCTATTGCTTCATATATGGGG
TATGCGAGGGCGCTATAGTTGGTATAGCCAGTATTCTAACCATTGATTTA
ACTTGTTTACGAGATTTGGGAGCAGCTTGGGGTATACAACAAACTATCAA
TGGCATTCCAACCATTGCTGGCCCTGTTCTGATTGCCTGGGTTGCTTCGA
TTGCAACTGGTCTACTTGTACTATTGGCACTACCTTCAGACCTGGCATGT
CATTACTTTGGTGTATTCAACATGTCAATATGCGGATCATTGTTGTGTGG
CATTGGCATGATCATATCATCTTATCTCCAGAACATTTATCATCTCTATT
TATCATTTGGGGTTTTGATGGGGATTGGCTCCTCATTATTGTATACACCA
ACCTTGGTGATGATGGGTAGATGGTTCCACAAATATCAAGCTCTGTCAAC
AACTATTGTAATGGTTGGAGCACCATCAGGATCTTTAGTATTCAATATCA
TCACAGAGAAAATCATGCAGAATTTCAAACTACGTTCGGTTATGGTTGTC
TATGGGATATGTTTGATGTGTATTACACTTGTCTGTTCGTTCGGATATAT
GCCGTTTAGTCCAACTTTCATAGAAAAGAGGTCAAATATTGAGAACAAAG
AAGAGGCAAAAGGACAAGACTCATTGGAAATTGGCAGTGGATTTGAATTC
AGAGCGTCGCTGTTAAAGAATGAAGCATATTGGCTTTACAATGTATCTCG
ATTCTTCTCAGTTCTCGCCCACTACGTTCCAATGTTTCACCTTATGGTAT
TCAAATTCAAAGAGCCAATTGTGGACAAAGGATTATGTTGGTTAATGTTA
GCTATGGTCTTTACCATATACTTCGTTCTGATTGGGACATTTTTTTCCTA
TGGTGTTTGGCTGCCAAGAGTTATGGAAGAATTTAATTGTAATCAAGAAC
AAGCTGGTGCAATGAACGATGCCAATTTGTTCCGTCCAAATTTCATGTTT
ATCTTTACCGGTGGTACGTTTCTTGTCAGTACTGTATTCATGCATTTAGC
AAGAACTATTCACAATAGAAGAAATAAAATATCTAAAGAAGAAGAACATC
AATCACAAATCGAATGAATCAAATATGCGATGACGATGGGGATTAGTAGT
TCAACAGCCAGTATCATGTTAGCTGTTTGGTCTGGAAGTAATTTCATTGG
TCGATTAGGATTTGGTATTTTTGCTTCCAAATACCGCTCAAAGGTCCCTA
TCACCTATCAGATAGTGCTATTTATGACGAGCTTGGTGTGCGCTGCGGCC
TTTTTCGCTGAAACCGCCTGGAGTCTTTTCCTCTATTGCTTCATATATGG
GGTATGCGAGGGCGCTATAGTTGGTATAGCCAGTATTCTAACCATTGATT
TAACTTGTTTACGAGATTTGGGAGCAGCTTGGGGTATACAACAAACTATC
AATGGCATTCCAACCATTGCTGGCCCTGTTCTGATTGCCTGGGTTGCTTC
GATTGCAACTGGTCTACTTGTACTATTGGCACTACCTTCAGACCTGGCAT
GTCATTACTTTGGTGTATTCAACATGTCAATATGCGGATCATTGTTGTGT
GGCATTGGCATGATCATATCATCTTATCTCCAGAACATTTATCATCTCTA
TTTATCATTTGGGGTTTTGATGGGGATTGGCTCCTCATTATTGTATACAC
CAACCTTGGTGATGATGGGTAGATGGTTCCACAAATATCAAGCTCTGTCA
ACAACTATTGTAATGGTTGGAGCACCATCAGGATCTTTAGTATTCAATAT
CATCACAGAGAAAATCATGCAGAATTTCAAACTACGTTCGGTTATGGTTG
TCTATGGGATATGTTTGATGTGTATTACACTTGTCTGTTCGTTCGGATAT
ATGCCGTTTAGTCCAACTTTCATAGAAAAGAGGTCAAATATTGAGAACAA
AGAAGAGGCAAAAGGACAAGACTCATTGGAAATTGGCAGTGGATTTGAAT
TCAGAGCGTCGCTGTTAAAGAATGAAGCATATTGGCTTTACAATGTATCT
CGATTCTTCTCAGTTCTCGCCCACTACGTTCCAATGTTTCACCTTATGGT
ATTCAAATTCAAAGAGCCAATTGTGGACAAAGGATTATGTTGGTTAATGT
TAGCTATGGTCTTTACCATATACTTCGTTCTGATTGGGACATTTTTTTCC
TATGGTGTTTGGCTGCCAAGAGTTATGGAAGAATTTAATTGTAATCAAGA
ACAAGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032989XLOC_032989Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052086-exon-scaffold_21-1575043694:163347..163533TCONS_00052086-exon-scaffold_21-1575043694:163347..163533Clytia hemisphaericaexon
TCONS_00052086-exon-scaffold_21-1575043694:159767..160374TCONS_00052086-exon-scaffold_21-1575043694:159767..160374Clytia hemisphaericaexon
TCONS_00052086-exon-scaffold_21-1575043694:159081..159450TCONS_00052086-exon-scaffold_21-1575043694:159081..159450Clytia hemisphaericaexon
TCONS_00052086-exon-scaffold_21-1575043694:158535..158701TCONS_00052086-exon-scaffold_21-1575043694:158535..158701Clytia hemisphaericaexon
TCONS_00052086-exon-scaffold_21-1575043694:158097..158259TCONS_00052086-exon-scaffold_21-1575043694:158097..158259Clytia hemisphaericaexon
TCONS_00052086-exon-scaffold_21-1510915933:163347..163533TCONS_00052086-exon-scaffold_21-1510915933:163347..163533Clytia hemisphaericaexon
TCONS_00052086-exon-scaffold_21-1510915933:159767..160374TCONS_00052086-exon-scaffold_21-1510915933:159767..160374Clytia hemisphaericaexon
TCONS_00052086-exon-scaffold_21-1510915933:159081..159450TCONS_00052086-exon-scaffold_21-1510915933:159081..159450Clytia hemisphaericaexon
TCONS_00052086-exon-scaffold_21-1510915933:158535..158701TCONS_00052086-exon-scaffold_21-1510915933:158535..158701Clytia hemisphaericaexon
TCONS_00052086-exon-scaffold_21-1510915933:158097..158259TCONS_00052086-exon-scaffold_21-1510915933:158097..158259Clytia hemisphaericaexon
TCONS_00052086-exon-scaffold_21-1491911889:163347..163533TCONS_00052086-exon-scaffold_21-1491911889:163347..163533Clytia hemisphaericaexon
TCONS_00052086-exon-scaffold_21-1491911889:159767..160374TCONS_00052086-exon-scaffold_21-1491911889:159767..160374Clytia hemisphaericaexon
TCONS_00052086-exon-scaffold_21-1491911889:159081..159450TCONS_00052086-exon-scaffold_21-1491911889:159081..159450Clytia hemisphaericaexon
TCONS_00052086-exon-scaffold_21-1491911889:158535..158701TCONS_00052086-exon-scaffold_21-1491911889:158535..158701Clytia hemisphaericaexon
TCONS_00052086-exon-scaffold_21-1491911889:158097..158259TCONS_00052086-exon-scaffold_21-1491911889:158097..158259Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052086-proteinTCONS_00052086-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:158097..163533 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.368027	0.581642	9.10071	9.01049	4.25505	4.56766	0.55298	1.32131	0	0	0.698394	0.719119	0.204869	0.171593	0	0	0.885048	0.644143	1.60542	2.27581	0	0	33.9435	25.8689	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00052086 vs. Swiss-Prot (Human)
Match: MOT2 (Monocarboxylate transporter 2 OS=Homo sapiens GN=SLC16A7 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.369e-25
Identity = 101/472 (21.40%), Postives = 197/472 (41.74%), Query Frame = 1 
Query:   55 DKGLCWLMLAMVFTIYFVLIGTFFSYG------VWLPRVMEEFNCNQEQAAWVASIATGXXXXXXXXXXXACHYFGVFNMSICGSLLCGIGMIISSYLQNIYHLYLSFGVLMGIGSSLLYTPTLVMMGRWFHKYQALSTTIVMVGAPSGSLVFNIITEKIMQNFKLRSVMVVYGICLMCITLVCSFGYMPFSPTFIEKRSNIENKEEAKGQDSL------------EIGSGFEFRASLLKNEAYWLYNVSRFFSVLAHYVPMFHLIKYAMTMGISSSTASIMLAVWSGSNFIGRLGFGIFA-SKY-RSKVPITYQIVLFMTSLVCAAAFFAETAWSLFLYCFIYGVCEGAIVGIASILTIDLTCLRDLGAAWGIQQTINGIPTIAGPVLIGAMNDANLFRPNFMFIFTGGTFLVSTVFMHLARTIHNRRNKISKEEEHQSQIE*NCD---KQEHQRIRTQKTKPADSLLRKR 1401
            D G  W+++   F      I   FSY       V+   + + F+    + AW++SI   ++      S +  + +G   + I G LLC +GM+++S+  ++  LYL+ G + G+G +    P L ++G++F++ + ++  + M G+P          + +   F  +   ++ G  L+   +  S    P  P   +  S  +NK      DS             ++    +F  SL K+  + +Y        L  + P+  L  YA   GI   +A+ +L+V +  +   R   G+ A SKY R ++   +   +    +       A+   SL LY   +G+  G++  +     +DL       +A G+   +   P + GP L G + D       +M++  G   + ++V++ +   I+ R     ++EE+  Q     +   K +H      K   A S+  +R
Sbjct:   15 DGGWGWIVVGAAF------ISIGFSYAFPKAVTVFFKEIQQIFHTTYSEIAWISSIMLAVMYAGGPVSSVLVNKYGSRPVVIAGGLLCCLGMVLASFSSSVVQLYLTMGFITGLGLAFNLQPALTIIGKYFYRKRPMANGLAMAGSPVFLSSLAPFNQYLFNTFGWKGSFLILGSLLLNACVAGSL-MRPLGPN--QTTSKSKNKTGKTEDDSSPKKIKTKKSTWEKVNKYLDF--SLFKHRGFLIYLSGNVIMFLGFFAPIIFLAPYAKDQGIDEYSAAFLLSVMAFVDMFARPSVGLIANSKYIRPRIQYFFSFAIMFNGVCHLLCPLAQDYTSLVLYAVFFGLGFGSVSSVLFETLMDLVGAPRFSSAVGLVTIVECGPVLLGPPLAGKLVDLT-GEYKYMYMSCGAIVVAASVWLLIGNAINYRLLAKERKEENARQKTRESEPLSKSKHSEDVNVKVSNAQSVTSER 474
The following BLAST results are available for this feature:
BLAST of TCONS_00052086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MOT21.369e-2521.40Monocarboxylate transporter 2 OS=Homo sapiens GN=S... [more]
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