TCONS_00052101 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052101
Unique NameTCONS_00052101
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052101 ID=TCONS_00052101|Name=TCONS_00052101|organism=Clytia hemisphaerica|type=transcript|length=533bp
AACGGCCCGACTTTCAGAGGCAAAAAAGACAACAACATTAGCTGGACAGT
CGGAAATCAATATTAAAAAACCAAGATTACAAGTAATTACAAGTAATCGA
GTAGTATTCAATACATAGTCATGATTCAATACATTTTGTTGTTCAGTCGC
CAGGGCAAActtagacttcaaaaatggtatCATGCCATTCCCTTGAAAGA
CAAGAAGAAGATCACCAGAGATTTGACAACAATGATTCTATCTAGGAAAC
CAAAAATGTGCAGTTTTCTTGAATACAAAGATTTAAAAGTTGTTTACAAA
AGATATGCTAGTTTGTTTTTCTGTGTTGCTATTGAAAGAGGAGACAACGA
ACTGTTATCACTAGAAATCATTCATCGATACGTTGAAATCCTAGATAAAT
ATTTTGGAAATGTAAGTAGGTGTTTTTATACCAAAGCAAGCTGTAGTTTA
ATGTTGTATATATTATGTCGCTTTACTTATCGATTGATTGTAAAAATTAA
TTGCCTtgctaattatttttttttgattttagt
Run BLAST on NCBI

protein sequence of TCONS_00052101-protein

>TCONS_00052101-protein ID=TCONS_00052101-protein|Name=TCONS_00052101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MIQYILLFSRQGKLRLQKWYHAIPLKDKKKITRDLTTMILSRKPKMCSFL
EYKDLKVVYKRYASLFFCVAIERGDNELLSLEIIHRYVEILDKYFGNVSR
CFYTKASCSLMLYILCRFTYRLIVKINCLANYFFLIL
Run BLAST on NCBI

transcript from alignment at scaffold_21:267548..271632-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052101 ID=TCONS_00052101|Name=TCONS_00052101|organism=Clytia hemisphaerica|type=transcript|length=4085bp|location=Sequence derived from alignment at scaffold_21:267548..271632- (Clytia hemisphaerica)
AACGGCCCGACTTTCAGAGGCAAAAAAGACAACAACATTAGCTGGACAGT
CGGGTGTATAAGATAAAAACTGCAATTATTGCTCTTTTAGGAAATTATTG
CAGAAAACGGCAATTTTTTTAACGATGAAATGCTGAATCAGCAAAATGTG
TTCTCCTTTTAAGGGCAAAGATTTCAGATGTGTTTGAAAATAGTAAAATT
GCATTGAGAAAAAGGTTTTTCGGTTTTTTAAAACTAAGTGATTTTTTCAA
TTTTTCGTTGCTTAATAACATGAAAAGTTCTAAAATAATAAGTTAAAAGA
TCCTGCATCAATGCCGAAACACAGCCAGAAAGAGATAACAAAACCCCCGT
TGTAAATTTGTTTACATATGACTCGATTTTGCTACCTGCATTTCTAACAA
AAAACAGTTGAAAAAAAAAAACTATAACGAGGCACAGTGGGCCTACTTAT
CGCGAGGGTGTCAAATACCACGTGTTCAATAAAAAAATCAACTTTTATTT
GCAACAGCAATAATTGCCGAAAACGGCAATTTTCATTTATTTACTTTTTT
ATTTTTCTGCTGATTCAGCATTTCATCGTTAAAAAAATTGCCGTTTTCGG
CAATAATTTCCGAAAAGAACAATAATTGCAGTATTTATCTTAAACACCCG
ACTGCTGGAGGCATGCAGTTTCTGTCAATTTTCTCAGGATCTAGAAGGAA
TTTTGAATAGAAATTTTAGTATGTTATCTAATAACTATATTCTCCATATG
AGAATGCAGTCCGCTTGCTTACGCTCACTTCGCTAAAGCCGTAAGGACCA
ATCTACATGGCGCGGACATAGTATGAATTTTCAAGGATGGCTTTATAGGG
GGGATGGGCAATTTTCCAGTTAAAATGGGGGTTTGAGCTTATAGGGGGGA
TCAAATAAAAATGGGGGGGATAGTAACTTTTTGGTTAAAAAATTTTTTTT
TATGTTATATGTTGATTTAAGTCAATAAAATTTAATATCACATAAATTAT
ATGATGGGGGCTCGGACCCCTGTAAATGGTGCGGGATCAAAAAATTTTAA
AAATAGGGGAGATACCTTTATAAGGGGGATGAAATATTAATGGGGGGTTC
AGACCCCTCTGCACACTATGGCGGAGCAATTCTGAAGCAAAAATAGGATA
GTCCTCCACTTGCTAGAGCTTTCTGTTATTACATGAAAACATGAAAAAGA
AGAAAACAGAGGCAAGTTCATTTTTCAATGTTCATGGACTCTGGTGTAAT
CTTTGAATGTTTTAAATGGTTTTAGATCTTGTAAGGCTGCTTTTTATTAA
TTTTTGTTTTGCTGCCCTGGATTGGCTAGGAAAGTTTTGGAAACATGGGT
TTGCACTTTCATTCTCTAGGGATACCAAGCTCTATAATTTTAATACTTTG
TATGTTGAGGTAAATTTAGTTTTCTCTAAAATTTTGAGCTTGGATATCTA
GGCTAGATTTCAGCCACTTGGCAATTTTGAACTTTCTTTATCGCACCGAG
TAGGCTTTTAAATCAAGGGGGGGTTTCAGGGGGTACCCGATTCCGCAATT
CCGCCAATTTTTTCTTCAATTTCCGTCAAACCGTCTTAAATTGAACCAAA
ATTCCGTCACCGAAAATTCCTTTGAAATTCAATATTTTTGTCGCAAATTT
TGAATATCTTTTACCAATTCCGAAATTCCGCAAATTTTTTTGCTAAATTC
CGCTTTTCCGCACTAAAATTGTCTAATTTTCCGTCTCCGTCAGAGAACCC
AATTTCCGTAATTCCGTCTAAATTTTTGCCAAATTCCGCCACTCTGTCCG
AAAAAAGGGCCGATTCCGCTCCTCCGCCAACCATGAAACCCCCCCTGATC
AAGGTGGGCATTCTCTAATTCTCCAATCGGGGTTCCGGTCATTTTGAATT
AAAACAAAAAAGTTAAAAAGGGCGCGCTATCAGTATGAAAGTTATCATGA
CATGTTATGAGCTATGATCAACTTGGTGGAGTTATCAAAACAAATTTGTT
GTCAAAGAGATTTAACAGTAAGTGAAAATACAGGCCAGATATCAACAGTC
CCATGTTTCGACCAATCGTCCCAAGTTAGAGCAGTTGACGGTAGTATTGA
TGTTTTCCTAATTTATGTATTTAAGACTTCCTTGGATTCCTGATTTTTGT
AAAAGCTAAAATTTGTCATTTCAGAAATCAATATTAAAAAACCAAGATTA
CAAGTAATTACAAGTAATCGAGTAGTATTCAATACATAGTCATGGTAAGC
TTTTTTTAACTTTTTTATTTTTGATAAGATTGCTGATTACAGATTAGCTG
TATACTATAAACAATATTTTATAGTTAAGAAACCATGACTCTATTCTATT
TGATTGAGATGCAGGAGGCTCTAAGGTCCATTTTGGCAACTATAGACGCA
TTCATTATGACCCTTTGTGTCATTTAAAATGACTTTTTGGACCCAGTAAT
TATGGTGTACTGCTCTTGTTTATGTAAGGTATTTTTTGCAAAAAATTAAT
TTGTGACTCATCTTAAAATAAAAAGATTAAGGACTTGGTGTTTTTTTTTA
GTTTAGGTAACTGTTAGCATTTTCAGGCTAAATAAATAAATGGTAGCTTT
TAATTTTGACTGTGATTTGAAATATTTAATCTAACTGTGTTTCTTTCTTT
ATATATTTTAGATTCAATACATTTTGTTGTTCAGTCGCCAGGGCAAACTT
AGACTTCAAAAATGGTATCATGCCATTCCCTTGAAAGACAAGAAGAAGAT
CACCAGAGATTTGACAACAATGATTCTATCTAGGAAACCAAAAATGTGCA
GTTTTCTTGAATACAAAGATTTAAAAGTTGTTTACAAAAGGTAAGTAAGA
GTTTAGCTTTCACTTGTGAAACTTTCTTAAAAAACTTATTGATTAAAATT
TACATAATGCACAAGCTAGATACACTGAAAAACCAATGTCCCTACTTCAA
TGATAGTGTCTATTCAAATTCATTTTCAATACCTTAAACTTTAGTTAATT
TGAAATAAAACTCTAATGTAGATGTACTTTTAGTATTATATCATGTTGAT
AATTTAATAGAACTAGTACTATACTGAACAAAATGAACAATGTTATATAT
AGTTAAATTTGATCAAGACAATTACCTATCCTATTTTTGTGAAAAAAGTT
CCTCTCTCTCAATTCTGTCAATTTCTTCTACGGCAAGAGCTCTTTTTGTT
ACCCAATGCATGTTATGTTTCGAAATTTTGTCAGAAGTGGACATTTCTTT
TTCTGAATCAACTCGTCTCATATAACACACCAATTTATTGACTGTTTATT
TTGTTNGCTTCTAGTTAATTTGAAATAAAACTCTAATGTAGATGTACTTT
TAGTATTATATCATGTTGATAATTTAATAGAACTAGTACTAGTACTGAAT
AAAATGAACAATGTTATAGTTAAATTTGATCAAGACAATTACCTATCCTA
TTTTTCTGAAAAAAATTCCTCTCTCTCAATTCTGTCAATTTCTTCTACGG
CAAGAGCTCTTTTTGTTACCCAATGCATGTTATGTTTCGAAATTTTGTCA
GAAGTGGACATTTCTTTTTCTGAATCAACTCGTCTCATATAACACACCAA
TTTATTGACTGTTTATTTTGTTTTTATTGTTTTTGAATGAGTTGTTACTC
TATATTATTGTAAATGATTGAAATTTGATATGAAGTTATTTGGATTAACA
TTAAATCCTCAAAATATTTGCTTTTTAAAAAATGATTCGAAAAGTTCTTT
TCTCCACATATCTCAAACACATCTCGGATGATACAACCCATCATACAGTT
TAGTGATCCTGTGCCATTTATGGTGCTCAAAACTTCTTCACAATTATTTT
TCAGATATGCTAGTTTGTTTTTCTGTGTTGCTATTGAAAGAGGAGACAAC
GAACTGTTATCACTAGAAATCATTCATCGATACGTTGAAATCCTAGATAA
ATATTTTGGAAATGTAAGTAGGTGTTTTTATACCAAAGCAAGCTGTAGTT
TAATGTTGTATATATTATGTCGCTTTACTTATCGATTGATTGTAAAAATT
AATTGCCTTGCTAATTATTTTTTTTTGATTTTAGT

Coding sequence (CDS) from alignment at scaffold_21:267548..271632-

>TCONS_00052101 ID=TCONS_00052101|Name=TCONS_00052101|organism=Clytia hemisphaerica|type=CDS|length=1233bp|location=Sequence derived from alignment at scaffold_21:267548..271632- (Clytia hemisphaerica)
ATATGCTAGTTTGTTTTTCTGTGTTGCTATTGAAAGAGGAGACAACGAAC
TGTTATCACTAGAAATCATTCATCGATACGTTGAAATCCTAGATAAATAT
TTTGGAAATGTAAGTAGGTGTTTTTATACCAAAGCAAGCTGTAGTTTAAT
GTTGTATATATTATGTCGCTTTACTTATCGATTGATTGTAAAAATTAATT
GCCTTGCTAATTATTTTTTTTTGATTTTAATTCAATACATTTTGTTGTTC
AGTCGCCAGGGCAAACTTAGACTTCAAAAATGGTATCATGCCATTCCCTT
GAAAGACAAGAAGAAGATCACCAGAGATTTGACAACAATGATTCTATCTA
GGAAACCAAAAATGTGCAGTTTTCTTGAATACAAAGATTTAAAAGTTGTT
TACAAAAGATGATATGCTAGTTTGTTTTTCTGTGTTGCTATTGAAAGAGG
AGACAACGAACTGTTATCACTAGAAATCATTCATCGATACGTTGAAATCC
TAGATAAATATTTTGGAAATGTAAGTAGGTGTTTTTATACCAAAGCAAGC
TGTAGTTTAATGTTGTATATATTATGTCGCTTTACTTATCGATTGATTGT
AAAAATTAATTGCCTTGCTAATTATTTTTTTTTGATTTTAATTCAATACA
TTTTGTTGTTCAGTCGCCAGGGCAAACTTAGACTTCAAAAATGGTATCAT
GCCATTCCCTTGAAAGACAAGAAGAAGATCACCAGAGATTTGACAACAAT
GATTCTATCTAGGAAACCAAAAATGTGCAGTTTTCTTGAATACAAAGATT
TAAAAGTTGTTTACAAAAGATGATATGCTAGTTTGTTTTTCTGTGTTGCT
ATTGAAAGAGGAGACAACGAACTGTTATCACTAGAAATCATTCATCGATA
CGTTGAAATCCTAGATAAATATTTTGGAAATGTAAGTAGGTGTTTTTATA
CCAAAGCAAGCTGTAGTTTAATGTTGTATATATTATGTCGCTTTACTTAT
CGATTGATTGTAAAAATTAATTGCCTTGCTAATTATTTTTTTTTGATTTT
AATTCAATACATTTTGTTGTTCAGTCGCCAGGGCAAACTTAGACTTCAAA
AATGGTATCATGCCATTCCCTTGAAAGACAAGAAGAAGATCACCAGAGAT
TTGACAACAATGATTCTATCTAGGAAACCAAAAATGTGCAGTTTTCTTGA
ATACAAAGATTTAAAAGTTGTTTACAAAAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032992XLOC_032992Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052101-proteinTCONS_00052101-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052101-exon-scaffold_21-1575043694:271580..271632TCONS_00052101-exon-scaffold_21-1575043694:271580..271632Clytia hemisphaericaexon
TCONS_00052101-exon-scaffold_21-1575043694:269389..269458TCONS_00052101-exon-scaffold_21-1575043694:269389..269458Clytia hemisphaericaexon
TCONS_00052101-exon-scaffold_21-1575043694:268793..268971TCONS_00052101-exon-scaffold_21-1575043694:268793..268971Clytia hemisphaericaexon
TCONS_00052101-exon-scaffold_21-1575043694:267548..267778TCONS_00052101-exon-scaffold_21-1575043694:267548..267778Clytia hemisphaericaexon
TCONS_00052101-exon-scaffold_21-1510915933:271580..271632TCONS_00052101-exon-scaffold_21-1510915933:271580..271632Clytia hemisphaericaexon
TCONS_00052101-exon-scaffold_21-1510915933:269389..269458TCONS_00052101-exon-scaffold_21-1510915933:269389..269458Clytia hemisphaericaexon
TCONS_00052101-exon-scaffold_21-1510915933:268793..268971TCONS_00052101-exon-scaffold_21-1510915933:268793..268971Clytia hemisphaericaexon
TCONS_00052101-exon-scaffold_21-1510915933:267548..267778TCONS_00052101-exon-scaffold_21-1510915933:267548..267778Clytia hemisphaericaexon
TCONS_00052101-exon-scaffold_21-1491911889:271580..271632TCONS_00052101-exon-scaffold_21-1491911889:271580..271632Clytia hemisphaericaexon
TCONS_00052101-exon-scaffold_21-1491911889:269389..269458TCONS_00052101-exon-scaffold_21-1491911889:269389..269458Clytia hemisphaericaexon
TCONS_00052101-exon-scaffold_21-1491911889:268793..268971TCONS_00052101-exon-scaffold_21-1491911889:268793..268971Clytia hemisphaericaexon
TCONS_00052101-exon-scaffold_21-1491911889:267548..267778TCONS_00052101-exon-scaffold_21-1491911889:267548..267778Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:267548..271632 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
143.115	132.299	157.579	140.582	27.3182	22.1706	39.5588	39.5385	53.6105	51.8899	41.3796	38.7236	27.0179	21.3274	25.7414	27.2241	60.3353	56.955	22.4652	28.8676	60.8753	59.9537	81.4817	85.0364	20.8089	26.5456	112.309	89.2531	38.5268	40.2433
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022775AP_mu_sigma_su
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
Blast
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BLAST of TCONS_00052101 vs. Swiss-Prot (Human)
Match: AP1S2 (AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.875e-47
Identity = 71/97 (73.20%), Postives = 87/97 (89.69%), Query Frame = 1 
Query:  124 IQYILLFSRQGKLRLQKWYHAIPLKDKKKITRDLTTMILSRKPKMCSFLEYKDLKVVYKRYASLFFCVAIERGDNELLSLEIIHRYVEILDKYFGNV 414
            +Q++LLFSRQGKLRLQKWY  +  K+KKKITR+L   +L+RKPKMCSFLE++DLK+VYKRYASL+FC AIE  DNEL++LEIIHRYVE+LDKYFG+V
Sbjct:    1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSV 97
The following BLAST results are available for this feature:
BLAST of TCONS_00052101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP1S26.875e-4773.20AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP... [more]
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