TCONS_00052104 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052104
Unique NameTCONS_00052104
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052104 ID=TCONS_00052104|Name=TCONS_00052104|organism=Clytia hemisphaerica|type=transcript|length=424bp
TTCGTATCTTCACAGCTCTTGTTCCTTATTCGATCTTCCAGCATTCAATC
TTTACTTGAGAGTCTCTTTGTTTTAAGTGGTCTCAAAGACTCTTAGAAta
ctttcaaaaatcttttgagCCTTCTTAAACCAAAGTTTATTGATATCATT
GTTACACGATAGCTGCAGATATACAGAAGTTGAATCGGGATTTTGGTGAT
CGAATTCAATCTTGACTTTATCCATCTCCTCAATTTTAACAAGATGCATC
TCATGATCTACTGAATTTGTTCGTGGTACGAACATGTTTCGCCAACTCGA
TTTCCGggtcttgttttgttttgtgatTGCAATGTCTAATGAAGTCATCA
ACAAAGCTTCGATGAGTTCAGGATCGCCTTCTTGAACTCTGTATTTTAAG
ATGATATCTTCGCAATAAATTGTC
Run BLAST on NCBI

protein sequence of TCONS_00052104-protein

>TCONS_00052104-protein ID=TCONS_00052104-protein|Name=TCONS_00052104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
TIYCEDIILKYRVQEGDPELIEALLMTSLDIAITKQNKTRKSSWRNMFVP
RTNSVDHEMHLVKIEEMDKVKIEFDHQNPDSTSVYLQLSCNNDINKLWFK
KAQKIFESILRVFETT
Run BLAST on NCBI

transcript from alignment at scaffold_21:91878..92301

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052104 ID=TCONS_00052104|Name=TCONS_00052104|organism=Clytia hemisphaerica|type=transcript|length=424bp|location=Sequence derived from alignment at scaffold_21:91878..92301 (Clytia hemisphaerica)
GACAATTTATTGCGAAGATATCATCTTAAAATACAGAGTTCAAGAAGGCG
ATCCTGAACTCATCGAAGCTTTGTTGATGACTTCATTAGACATTGCAatc
acaaaacaaaacaagaccCGGAAATCGAGTTGGCGAAACATGTTCGTACC
ACGAACAAATTCAGTAGATCATGAGATGCATCTTGTTAAAATTGAGGAGA
TGGATAAAGTCAAGATTGAATTCGATCACCAAAATCCCGATTCAACTTCT
GTATATCTGCAGCTATCGTGTAACAATGATATCAATAAACTTTGGTTTAA
GAAGGctcaaaagatttttgaaagtaTTCTAAGAGTCTTTGAGACCACTT
AAAACAAAGAGACTCTCAAGTAAAGATTGAATGCTGGAAGATCGAATAAG
GAACAAGAGCTGTGAAGATACGAA

Coding sequence (CDS) from alignment at scaffold_21:91878..92301

>TCONS_00052104 ID=TCONS_00052104|Name=TCONS_00052104|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_21:91878..92301 (Clytia hemisphaerica)
ACAATTTATTGCGAAGATATCATCTTAAAATACAGAGTTCAAGAAGGCGA
TCCTGAACTCATCGAAGCTTTGTTGATGACTTCATTAGACATTGCAatca
caaaacaaaacaagaccCGGAAATCGAGTTGGCGAAACATGTTCGTACCA
CGAACAAATTCAGTAGATCATGAGATGCATCTTGTTAAAATTGAGGAGAT
GGATAAAGTCAAGATTGAATTCGATCACCAAAATCCCGATTCAACTTCTG
TATATCTGCAGCTATCGTGTAACAATGATATCAATAAACTTTGGTTTAAG
AAGGctcaaaagatttttgaaagtaTTCTAAGAGTCTTTGAGACCACTTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032995XLOC_032995Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052104-proteinTCONS_00052104-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052104-exon-scaffold_21-1491911889:91878..92301TCONS_00052104-exon-scaffold_21-1491911889:91878..92301Clytia hemisphaericaexon
TCONS_00052104-exon-scaffold_21-1510915933:91878..92301TCONS_00052104-exon-scaffold_21-1510915933:91878..92301Clytia hemisphaericaexon
TCONS_00052104-exon-scaffold_21-1575043694:91878..92301TCONS_00052104-exon-scaffold_21-1575043694:91878..92301Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:91878..92301 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.63645	1.19167	0.139053	0.17224	0	0	0	0	0.0936997	0	0.371623	0.634837	0	0	1.59544	0.700378	0	0.688042	0.177167	0.474352	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052104 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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