|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052106 ID=TCONS_00052106|Name=TCONS_00052106|organism=Clytia hemisphaerica|type=transcript|length=1246bp
tcggattttgcttaaaaaggctTGGAGTGTGTTACACAATCCGTTCAGGT
TAAATAATCTTGAAAAGCGTTAAGGATTTAatgtaaaattgaatttttct
tcattttttagtctagaaattaaatcaaatttcagaaaaagatGGCCACC
ATTCAAGATTATGAAAGTTTTGATTGCGATGCTGATTGTGAGGCTTTAAA
CGGAGCTATGGAAGGACTGGGAACGAATGAAGACATGATCACCGAAACAA
TAACAAAACGTTCGAATGCTCAACGTCTTGAAGTCAAAGAGAGATTTCCA
CAAATGTTTGGAAAGAGATTGGAAGATGCTCTTAAAGATGAATTGGGTGG
AAACTACGAAGATGTTGTTTTAGCTTTGTTTAAATCACCAGTTGACCTTG
ATGCGTCTGAATTACATGATGCTATTAAGGGAGCTGGCACTAGTGAAGGA
GTTCTGATTGAAATCTTGTGTTCACGAACCAATGAGGAGATTGCTAGCAT
CAAAGAAGCATACACCAATCTGTACGATGCTGATTTATTGGAGGATATTG
AAAGCGATACGTCTGGAGCATTTGGTAAATTGATGTTTTCTTTAGCTCAA
GGTTGCCGTAATGAAGATGAGGAACTTGACCAGGATTTGGCAGCTGAAGA
TGCTCAAGCATTGGTAGACGCTGGTGAAGCACAATGGGGTACCGATGAAT
CAAGATTCAATGTGGTGTTAGCTTCAAGAAGTTACTGGCATTTGATCCAT
GTATTTGATCTGTATGAGACCCTGTCAgagaagaaaattgaagaagcgAT
TGAAAGCGAAATGAGTGGCGATGTTAAAGAAGCCATGTTAGCAATTGTCA
AATGTGTGTATGACAAAACACAATACTTCTGCGAACGTATTTACAATTCA
ATGAAGGGGGCTGGCACTGATGACCGTACCTTGATTCGGCTCGTCGTCTC
CAGATCTGAAATTGATCTAGCAACGATTCAAGATTACTTTGCTGGAAAAT
ATGAACAGACTGTATCAGAATTCATTGAAGATGATTGTGGTGGTGATTAT
AAAAGAGCTCTACTTCATCTTTGCGCTGGTAATAATTAGATAATTTTTCc
taaattatgtttttttcgaaaaaataaaacttgttaTTTATAATTAGCAT
TTGGAtaattgaaaatagaaaaaagataATGACCAACATACAACATAGTA
GATTCTCTTTTTCTATGTATTGCTTTTAATTACATTTGATTCCTGG Run BLAST on NCBI protein sequence of TCONS_00052106-protein >TCONS_00052106-protein ID=TCONS_00052106-protein|Name=TCONS_00052106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MATIQDYESFDCDADCEALNGAMEGLGTNEDMITETITKRSNAQRLEVKE
RFPQMFGKRLEDALKDELGGNYEDVVLALFKSPVDLDASELHDAIKGAGT
SEGVLIEILCSRTNEEIASIKEAYTNLYDADLLEDIESDTSGAFGKLMFS
LAQGCRNEDEELDQDLAAEDAQALVDAGEAQWGTDESRFNVVLASRSYWH
LIHVFDLYETLSEKKIEEAIESEMSGDVKEAMLAIVKCVYDKTQYFCERI
YNSMKGAGTDDRTLIRLVVSRSEIDLATIQDYFAGKYEQTVSEFIEDDCG
GDYKRALLHLCAGNN Run BLAST on NCBI transcript from alignment at scaffold_21:145598..146843 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052106 ID=TCONS_00052106|Name=TCONS_00052106|organism=Clytia hemisphaerica|type=transcript|length=1246bp|location=Sequence derived from alignment at scaffold_21:145598..146843 (Clytia hemisphaerica)
CCAGGAATCAAATGTAATTAAAAGCAATACATAGAAAAAGAGAATCTACT
ATGTTGTATGTTGGTCATtatcttttttctattttcaattaTCCAAATGC
TAATTATAAAtaacaagttttattttttcgaaaaaaacataatttagGAA
AAATTATCTAATTATTACCAGCGCAAAGATGAAGTAGAGCTCTTTTATAA
TCACCACCACAATCATCTTCAATGAATTCTGATACAGTCTGTTCATATTT
TCCAGCAAAGTAATCTTGAATCGTTGCTAGATCAATTTCAGATCTGGAGA
CGACGAGCCGAATCAAGGTACGGTCATCAGTGCCAGCCCCCTTCATTGAA
TTGTAAATACGTTCGCAGAAGTATTGTGTTTTGTCATACACACATTTGAC
AATTGCTAACATGGCTTCTTTAACATCGCCACTCATTTCGCTTTCAATcg
cttcttcaattttcttctcTGACAGGGTCTCATACAGATCAAATACATGG
ATCAAATGCCAGTAACTTCTTGAAGCTAACACCACATTGAATCTTGATTC
ATCGGTACCCCATTGTGCTTCACCAGCGTCTACCAATGCTTGAGCATCTT
CAGCTGCCAAATCCTGGTCAAGTTCCTCATCTTCATTACGGCAACCTTGA
GCTAAAGAAAACATCAATTTACCAAATGCTCCAGACGTATCGCTTTCAAT
ATCCTCCAATAAATCAGCATCGTACAGATTGGTGTATGCTTCTTTGATGC
TAGCAATCTCCTCATTGGTTCGTGAACACAAGATTTCAATCAGAACTCCT
TCACTAGTGCCAGCTCCCTTAATAGCATCATGTAATTCAGACGCATCAAG
GTCAACTGGTGATTTAAACAAAGCTAAAACAACATCTTCGTAGTTTCCAC
CCAATTCATCTTTAAGAGCATCTTCCAATCTCTTTCCAAACATTTGTGGA
AATCTCTCTTTGACTTCAAGACGTTGAGCATTCGAACGTTTTGTTATTGT
TTCGGTGATCATGTCTTCATTCGTTCCCAGTCCTTCCATAGCTCCGTTTA
AAGCCTCACAATCAGCATCGCAATCAAAACTTTCATAATCTTGAATGGTG
GCCatctttttctgaaatttgatttaatttctagactaaaaaatgaagaa
aaattcaattttacatTAAATCCTTAACGCTTTTCAAGATTATTTAACCT
GAACGGATTGTGTAACACACTCCAagcctttttaagcaaaatccga Coding sequence (CDS) from alignment at scaffold_21:145598..146843 >TCONS_00052106 ID=TCONS_00052106|Name=TCONS_00052106|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_21:145598..146843 (Clytia hemisphaerica)
CTAATTATTACCAGCGCAAAGATGAAGTAGAGCTCTTTTATAATCACCAC
CACAATCATCTTCAATGAATTCTGATACAGTCTGTTCATATTTTCCAGCA
AAGTAATCTTGAATCGTTGCTAGATCAATTTCAGATCTGGAGACGACGAG
CCGAATCAAGGTACGGTCATCAGTGCCAGCCCCCTTCATTGAATTGTAAA
TACGTTCGCAGAAGTATTGTGTTTTGTCATACACACATTTGACAATTGCT
AACATGGCTTCTTTAACATCGCCACTCATTTCGCTTTCAATcgcttcttc
aattttcttctcTGACAGGGTCTCATACAGATCAAATACATGGATCAAAT
GCCAGTAACTTCTTGAAGCTAACACCACATTGAATCTTGATTCATCGGTA
CCCCATTGTGCTTCACCAGCGTCTACCAATGCTTGAGCATCTTCAGCTGC
CAAATCCTGGTCAAGTTCCTCATCTTCATTACGGCAACCTTGAGCTAAAG
AAAACATCAATTTACCAAATGCTCCAGACGTATCGCTTTCAATATCCTCC
AATAAATCAGCATCGTACAGATTGGTGTATGCTTCTTTGATGCTAGCAAT
CTCCTCATTGGTTCGTGAACACAAGATTTCAATCAGAACTCCTTCACTAG
TGCCAGCTCCCTTAATAGCATCATGTAATTCAGACGCATCAAGGTCAACT
GGTGATTTAAACAAAGCTAAAACAACATCTTCGTAGTTTCCACCCAATTC
ATCTTTAAGAGCATCTTCCAATCTCTTTCCAAACATTTGTGGAAATCTCT
CTTTGACTTCAAGACGTTGAGCATTCGAACGTTTTGTTATTGTTTCGGTG
ATCATGTCTTCATTCGTTCCCAGTCCTTCCATAGCTCCGTTTAAAGCCTC
ACAATCAGCATCGCAATCAAAACTTTCATAATCTTGAATGGTGGCCat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052106-exon-scaffold_21-1491911889:145598..146843 | TCONS_00052106-exon-scaffold_21-1491911889:145598..146843 | Clytia hemisphaerica | exon |
| TCONS_00052106-exon-scaffold_21-1510915933:145598..146843 | TCONS_00052106-exon-scaffold_21-1510915933:145598..146843 | Clytia hemisphaerica | exon |
| TCONS_00052106-exon-scaffold_21-1575043694:145598..146843 | TCONS_00052106-exon-scaffold_21-1575043694:145598..146843 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:145598..146843 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005544 | calcium-dependent phospholipid binding |
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005544 |
calcium-dependent phospholipid binding |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
BLAST of TCONS_00052106 vs. Swiss-Prot (Human)
Match: ANX13 (Annexin A13 OS=Homo sapiens GN=ANXA13 PE=1 SV=3) HSP 1 Score: 264.233 bits (674), Expect = 2.089e-84 Identity = 150/305 (49.18%), Postives = 208/305 (68.20%), Query Frame = 1
Query: 163 ESFDCDADCEALNGAMEGLGTNEDMITETITKRSNAQRLEVKERFPQMFGKRLEDALKDELGGNYEDVVLALFKSPVDLDASELHDAIKGAGTSEGVLIEILCSRTNEEIASIKEAYTNLYDADLLEDIESDTSGAFGKLMFSLAQGCRNXXXXXXXXXXXXXXXXXVDAGEAQWGTDESRFNVVLASRSYWHLIHVFDLYETLXXXXXXXXXXXXMSGDVKEAMLAIVKCVYDKTQYFCERIYNSMKGAGTDDRTLIRLVVSRSEIDLATIQDYFAGKYEQTVSEFIEDDCGGDYKR---ALLH 1068
+ FD D D + LN A +G+GTNE I E ++ R++ +R ++K+++ +GK LE+ LK EL GN+E LAL P + A +L A+KG GT E VLIE+LC+RTN+EI +IKEAY L+D L D++ DTSG K++ SL Q RNE +++D+DLA +DA+ L DAGE +WGTDE FN VLA RSY L F Y+ L K IEEAIE E SGD+++A L +V+C D YF ER+Y SMKGAGTD+ TLIR+VV+R+E+DL I+ F KY++++S+ + D GD+++ ALLH
Sbjct: 12 QGFDVDRDAKKLNKACKGMGTNEAAIIEILSGRTSDERQQIKQKYKATYGKELEEVLKSELSGNFEKTALALLDRPSEYAARQLQKAMKGLGTDESVLIEVLCTRTNKEIIAIKEAYQRLFDRSLESDVKGDTSGNLKKILVSLLQANRNEGDDVDKDLAGQDAKDLYDAGEGRWGTDELAFNEVLAKRSYKQLRATFQAYQILIGKDIEEAIEEETSGDLQKAYLTLVRCAQDCEDYFAERLYKSMKGAGTDEETLIRIVVTRAEVDLQGIKAKFQEKYQKSLSDMVRSDTSGDFRKLLVALLH 316
The following BLAST results are available for this feature:
|
