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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052112 ID=TCONS_00052112|Name=TCONS_00052112|organism=Clytia hemisphaerica|type=transcript|length=1089bp
TCTTGATGGAAAATAAAAAGCCCGTAattatgtgaaagaaaaaccttgta
tctttcagaatttttaaacagaatctgaatatctttattggttcgactgt
gaaagtaatttttgtaaattataCATTTgggtttttttccaaaaggtgaa
aattttgtgataacagtcatcaaattttttttttcttcctgcaagtttgt
gtcatgatggagaacatctgtaccaactTTTATGGCCATAGCTtttctag
ataaaaaataatcgagggtggtccCACTGGggcttcaaaaataaaaaaag
cttggggtttgtccgctaattggaaGGTCCAcaaattgagtgtccgcctt
ttagaaacgtGTTTACGAGAATTTGACTAGGAATTGGTCGGGTAAAATAG
AATTGTTCGCTAATCAGAGATGTCCGCCTTTCAAAGTCCGTTAattggag
gttttactgtattAAAAAAGTGATTAGTTATGGCTTTCCCTCGCCACAAA
GCTGGCGAATAAATTTACCAACATCATTGTAACGAAGTGATTGACCAGTG
CAGACATTATAGAATTGTCGAATAGTGTAGTCTGGGTTCCATTGGTTGAT
CAGCTCCAATAATTGATTTGTTGGATTTTCTCTCCCATATACATATTGAT
GCGATGCTTCGATTTCTGTTTTCTCGTGTTCATCGAACCATTTTTCGTAG
GTATCATAGACAAGTTGCCAGCCATTTTGGTGACTTAAAGCCCTAGCTAT
ATCATCAGTCTCAAGATCACTGAGTGTGTCTAGAGCCTTATCCTTTCGTA
AGTTGAGATGTTGTAACTCGACCAAGCCAAGATCCACACATGATTGTTGT
AATTTACCCCAAGTCAGGTCTGGTAATTTAGGTTTCAATTTGAccaaaaa
ctttttattatgaataaaagaaatattatttttcatgtCTTCTAACTGGT
CGTTTCTTTCTGTGAAAACTCCTTGGCCTACCTTATACCATCTACAACCT
TTCTCCAGGAAATTTGCCAGCTCTCTTTTGTGGGCAGCCTTTTTGAATAC
GTCTTGTAGTAAGTAGTTTGATTGTAATGTAGGCGCTAC Run BLAST on NCBI transcript from alignment at scaffold_210:70027..71170+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052112 ID=TCONS_00052112|Name=TCONS_00052112|organism=Clytia hemisphaerica|type=transcript|length=1144bp|location=Sequence derived from alignment at scaffold_210:70027..71170+ (Clytia hemisphaerica)
TCTTGATGGAAAATAAAAAGCCCGTAattatgtgaaagaaaaaccttgta
tctttcagaatttttaaacagaatctgaatatctttattggttcgactgt
gaaagtaatttttgtaaattataCATTTgggtttttttccaaaaggtgaa
aattttgtgataacagtcatcaaattttttttttcttcctgcaagtttgt
gtcatgatggagaacatctgtaccaactTTTATGGCCATAGCTtttctag
ataaaaaataatcgagggtggtccCACTGGggcttcaaaaataaaaaaag
cttggggtttgtccgctaattggaaGGTCCAcaaattgagtgtccgcctt
ttagaaacgtGTTTACGAGAATTTGACTAGGAATTGGTCGGGTAAAATAG
AATTGTTCGCTAATCAGAGATGTCCGCCTTTCAAAGTCCGTTAattggag
gttttactgtattAAAAAAGTGATTAGTTATGGCTTTCCCTCGCCACAAA
GCTGGCGAATAAATTTACCAACATCATTGTAACGAAGTGATTGACCAGTG
CAGACATTATAGAATTGTCGAATAGTGTAGTCTGGGTTCCATTGGTTGAT
CAGCTCCAATAATTGATTTGTTGGATTTTCTCTCCCATATACATATTGAT
GCGATGCTTCGATTTCTGTTTTCTCGTGTTCATCGAACCATTTTTCGTAG
GTATCATAGACAAGTTGCCAGCCATTTTGGTGACTTAAAGCCCTAGCTAT
ATCATCAGTCTCAAGATCACTGAGTGTGTCTAGAGCCTTATCCTTTCGTA
AGTTGAGATGTTGTAACTCGACCAAGCCAAGATCCACACATGATTGTTGT
AATACACCCCAAGTCAGGNAATTCGACCAAGCCAAGATCCACACATGATT
GTTGTAATTTACCCCAAGTCAGGTCTGGTAATTTAGGTTTCAATTTGAcc
aaaaactttttattatgaataaaagaaatattatttttcatgtCTTCTAA
CTGGTCGTTTCTTTCTGTGAAAACTCCTTGGCCTACCTTATACCATCTAC
AACCTTTCTCCAGGAAATTTGCCAGCTCTCTTTTGTGGGCAGCCTTTTTG
AATACGTCTTGTAGTAAGTAGTTTGATTGTAATGTAGGCGCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052112-exon-scaffold_210-1491911889:70027..70865 | TCONS_00052112-exon-scaffold_210-1491911889:70027..70865 | Clytia hemisphaerica | exon |
| TCONS_00052112-exon-scaffold_210-1510915933:70027..70865 | TCONS_00052112-exon-scaffold_210-1510915933:70027..70865 | Clytia hemisphaerica | exon |
| TCONS_00052112-exon-scaffold_210-1575043694:70027..70865 | TCONS_00052112-exon-scaffold_210-1575043694:70027..70865 | Clytia hemisphaerica | exon |
| TCONS_00052112-exon-scaffold_210-1491911889:70921..71170 | TCONS_00052112-exon-scaffold_210-1491911889:70921..71170 | Clytia hemisphaerica | exon |
| TCONS_00052112-exon-scaffold_210-1510915933:70921..71170 | TCONS_00052112-exon-scaffold_210-1510915933:70921..71170 | Clytia hemisphaerica | exon |
| TCONS_00052112-exon-scaffold_210-1575043694:70921..71170 | TCONS_00052112-exon-scaffold_210-1575043694:70921..71170 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_210 | supercontig | scaffold_210:70027..71170 + |
Blast
The following BLAST results are available for this feature:
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