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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052115 ID=TCONS_00052115|Name=TCONS_00052115|organism=Clytia hemisphaerica|type=transcript|length=1209bp
CAGAATTGAAGTATGCTTCTAATAACGTTAATTTTGACAAACATTGTTTT
GGTACAATCTCAATGGTATTTGGgtgaagaaaaacaacaaaacacaacAA
ATCTTGATACAAAGGATGCTTCAAAACCTGTTCTTGTAACATCACCAGTC
GAGTGTATTTTGAAATGCAAGAGAAAAGGAATGGACAATTTCTATGTTAA
GGATAAAAATGAATGTTTCTGTTTGAAGAGTCAAGACCAGGCGATTAATT
CAGATGGAGAATCAATGCAAGGAATCGTTTATAAACAAtattGTAACGAA
GAAACATACGGTGATTCAAACCCATTGGTCATTAAAGATAAGAAGAAACT
AAAGATTCGCAAAGCTACCTCCACAACACCAGTTCTTCAGTGGGCTGATT
TGCACATTTATCGGTTGGACGTCAAAGCTGGGGAGCATCGGCTAGGCGAT
ATATTCATATTTACGGAATTGGATAACACAATGTCTGGCAATTATGTCGT
TAGCCCAGTTAACCCCAGCGATAACGATATATTCAAAGTACCAATCTCTT
ACGAAAAGTTCTGGATGCTTGGTGATAGTGCATTTTGGAGGCCAACTTGC
CCAGCTGGGTATGCTCGATTTGGAATCTTAGGCACGGTACAGGGAAAAAG
GCCTGTCGACGGTGACATCTATTGTGTCAAAGAGGAGTATACTTTGGAAG
GTTCAATTGAATGGGAACTTCTCTGGAAATGGGACCGTGATGCTTCGAAC
AGAGCAAAGATTTTTAAAGGAAAGTCTGGGCAGCCCGAAAAAACAGTGGA
TTTGATCACAGTTTTGGTAGCCCTGAAGAATATCCATCAAAGTCCATCGC
AAAAATACCACTTTTTGTTGAAAGAATTTATTGTTGAGGAAAATTAAAAC
ATACATAATATTAACCCATCGGGCAGGTCACACAGCACTTAAATTCGAGG
CCAACTTCTATAAATTGACAAAGCATCCCAATGCATATTATGCGagatgt
tttaaaaagataccATTTGTGATACGAATATATAAACAGACATGTTTAAT
TTGAAATTCGTTAAAAACAAAGCCATCGTACGGGGAAACTGTAACTTGTT
TTAAATGAGGATTTTGAGTAGGGCGTCGGGCGGAAGTGACTTTTAATTAA
CACAGAAGCGTAAAACAGTGTGAATTGATTGTTAAACTAACAGACAATGG
TATGGTGAC Run BLAST on NCBI protein sequence of TCONS_00052115-protein >TCONS_00052115-protein ID=TCONS_00052115-protein|Name=TCONS_00052115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
MLLITLILTNIVLVQSQWYLGEEKQQNTTNLDTKDASKPVLVTSPVECIL
KCKRKGMDNFYVKDKNECFCLKSQDQAINSDGESMQGIVYKQYCNEETYG
DSNPLVIKDKKKLKIRKATSTTPVLQWADLHIYRLDVKAGEHRLGDIFIF
TELDNTMSGNYVVSPVNPSDNDIFKVPISYEKFWMLGDSAFWRPTCPAGY
ARFGILGTVQGKRPVDGDIYCVKEEYTLEGSIEWELLWKWDRDASNRAKI
FKGKSGQPEKTVDLITVLVALKNIHQSPSQKYHFLLKEFIVEEN Run BLAST on NCBI transcript from alignment at scaffold_210:160412..162829+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052115 ID=TCONS_00052115|Name=TCONS_00052115|organism=Clytia hemisphaerica|type=transcript|length=2418bp|location=Sequence derived from alignment at scaffold_210:160412..162829+ (Clytia hemisphaerica)
CAGAATTGAAGTATGCTTCTAATAACGTTAATTTTGACAAACATTGTTTT
GGTACAATCTCAATGGTATTTGGgtgaagaaaaacaacaaaacacaacAA
ATCTTGATACAAAGGATGCTTCAAAACCTGTTCTTGTAACATCACCAGTC
GAGTGTATTTTGAAATGCAAGAGAAAAGGAATGGACAATTTCTATGTTAA
GGATAAAAATGAATGTTTCTGTTTGAAGAGTCAAGACCAGGCGATTAATT
CAGATGGAGAATCAATGCAAGGAATCGTTTATAAACAAGTAAGTACATGC
TTCTTTTTGTAttagaatagtgtactttggatgagggtcaatcccggggg
gggggacagtcaggcaaattgaccgacgggtatgtgcggcggttaagggt
atgtttttcaaaatatcataaatgcactgcaagggtggacttttgataaa
tgcactgtaagggtggaaatttcagcaaatctgggaaaaatttcaaattt
ttgctcgaaaatgttgattttttttgctctaaaagagtttaaaatttgaa
aaaatgcactgtaagggtatgaatttcaccgatttttttctgcactgtaa
ggctgcgattctaaaagccaattttttcgccgcacataccgtcagttggt
aaacccactgcccccccccccggggggtcAATTATTCTTAATGTATCTTT
AATTTCTTAGACTGTTTTATACAAACACGAAAAATGATCATTTTAAAGAG
TTTGAGACTTTTGAGTGCACATTGGGAGCTAAAATTAAAATTCTgcttca
aacttttttctgtTAACCGAATAGAAAGTGACTTTATTCTTATCATAATC
TGTGAAActtagagggtattcttagggtattcttagggtattcttacgat
ttggccaattttcactttatataaggtattcttacaaaaaatcattatgc
aaaatatcagaaaaaaaataatgagccaacCTCGAGAAAAAATGGTAACA
GatgaacggacgaacaaacaaaAGGTTAAAATAAAGGACATCCGTGGTAG
GTCTAAAAACAGCGGGTAAGCCAAggtaaaaattataattgcttAATGTT
AACGGGTccttaatttcaaaacaaaggctgaatgaAGTCTAAACCAGATT
TTACCAACttaaagtcatcttttaaaagaatactCTGAAACAAAAGtggt
gtttaaaaaaaaagtctttcGGAGAAGAGACAACTTCTTTTTCCTCGAAA
AcgtatatttgaaaaatatttgattttttttcagtattGTAACGAAGAAA
CATACGGTGATTCAAACCCATTGGTCATTAAAGGTCAGTATTTTAAACCG
TTTTCCGAAGATATATAAATTCACATGTATGGTTGATTACAAAATTATCA
CAAGATGATCCAACGGCAAATAATTCAACCCGGGAACTCCTTAAAACTCA
TCGGATCAGGCGAAAACCAGCTTTGACTTGCCCAAAATGCTCGAAGAGTT
AAAAATGCTTGATATTCAGCCAATCGGATTTTGCTTGCTTTTTTAGATAA
GAAGAAACTAAAGATTCGCAAAGCTACCTCCACAACACCAGTTCTTCAGT
GGGCTGATTTGCACATTTATCGGTTGGACGTCAAAGCTGGGGAGCATCGG
CTAGGCGATATATTCATATTTACGGAATTGGATAACACAATGTCTGGCAA
TTATGTCGTTAGCCCAGTTAACCCCAGCGATAACGATATATTCAAAGTAC
CAATCTCTTACGAAAAGTTCTGGATGCTTGGTGATAGTGCATTTTGGAGG
CCAACTTGCCCAGCTGGGTATGCTCGATTTGGAATCTTAGGCACGGTACA
GGGAAAAAGGCCTGTCGACGGTGACATCTATTGTGTCAAAGAGGAGTATA
CTTTGGAAGGTTCAATTGAATGGGAACTTCTCTGGAAATGGGACCGTGAT
GCTTCGAACAGAGCAAAGATTTTTAAAGGAAAGTCTGGGCAGCCCGAAAA
AACAGTGGATTTGATCACAGTTTTGGTAGCCCTGAAGAATATCCATCAAA
GTCCATCGCAAAAATACCACTTTTTGTTGAAAGAATTTATTGTTGAGGAA
AATTAAAACATACATAATATTAACCCATCGGGCAGGTCACACAGCACTTA
AATTCGAGGCCAACTTCTATAAATTGACAAAGCATCCCAATGCATATTAT
GCGagatgttttaaaaagataccATTTGTGATACGAATATATAAACAGAC
ATGTTTAATTTGAAATTCGTTAAAAACAAAGCCATCGTACGGGGAAACTG
TAACTTGTTTTAAATGAGGATTTTGAGTAGGGCGTCGGGCGGAAGTGACT
TTTAATTAACACAGAAGCGTAAAACAGTGTGAATTGATTGTTAAACTAAC
AGACAATGGTATGGTGAC Coding sequence (CDS) from alignment at scaffold_210:160412..162829+ >TCONS_00052115 ID=TCONS_00052115|Name=TCONS_00052115|organism=Clytia hemisphaerica|type=CDS|length=2655bp|location=Sequence derived from alignment at scaffold_210:160412..162829+ (Clytia hemisphaerica)
ATGCTTCTAATAACGTTAATTTTGACAAACATTGTTTTGGTACAATCTCA
ATGGTATTTGGgtgaagaaaaacaacaaaacacaacAAATCTTGATACAA
AGGATGCTTCAAAACCTGTTCTTGTAACATCACCAGTCGAGTGTATTTTG
AAATGCAAGAGAAAAGGAATGGACAATTTCTATGTTAAGGATAAAAATGA
ATGTTTCTGTTTGAAGAGTCAAGACCAGGCGATTAATTCAGATGGAGAAT
CAATGCAAGGAATCGTTTATAAACAAtattGTAACGAAGAAACATACGGT
GATTCAAACCCATTGGTCATTAAAGATAAGAAGAAACTAAAGATTCGCAA
AGCTACCTCCACAACACCAGTTCTTCAGTGGGCTGATTTGCACATTTATC
GGTTGGACGTCAAAGCTGGGGAGCATCGGCTAGGCGATATATTCATATTT
ACGGAATTGGATAACACAATGTCTGGCAATTATGTCGTTAGCCCAGTTAA
CCCCAGCGATAACGATATATTCAAAGTACCAATCTCTTACGAAAAGTTCT
GGATGCTTGGTGATAGTGCATTTTGGAGGCCAACTTGCCCAGCTGGGTAT
GCTCGATTTGGAATCTTAGGCACGGTACAGGGAAAAAGGCCTGTCGACGG
TGACATCTATTGTGTCAAAGAGGAGTATACTTTGGAAGGTTCAATTGAAT
GGGAACTTCTCTGGAAATGGGACCGTGATGCTTCGAACAGAGCAAAGATT
TTTAAAGGAAAGTCTGGGCAGCCCGAAAAAACAGTGGATTTGATCACAGT
TTTGGTAGCCCTGAAGAATATCCATCAAAGTCCATCGCAAAAATACCACT
TTTTGTTGAAAGAATTTATTGTTGAGGAAAATTAAATGCTTCTAATAACG
TTAATTTTGACAAACATTGTTTTGGTACAATCTCAATGGTATTTGGgtga
agaaaaacaacaaaacacaacAAATCTTGATACAAAGGATGCTTCAAAAC
CTGTTCTTGTAACATCACCAGTCGAGTGTATTTTGAAATGCAAGAGAAAA
GGAATGGACAATTTCTATGTTAAGGATAAAAATGAATGTTTCTGTTTGAA
GAGTCAAGACCAGGCGATTAATTCAGATGGAGAATCAATGCAAGGAATCG
TTTATAAACAAtattGTAACGAAGAAACATACGGTGATTCAAACCCATTG
GTCATTAAAGATAAGAAGAAACTAAAGATTCGCAAAGCTACCTCCACAAC
ACCAGTTCTTCAGTGGGCTGATTTGCACATTTATCGGTTGGACGTCAAAG
CTGGGGAGCATCGGCTAGGCGATATATTCATATTTACGGAATTGGATAAC
ACAATGTCTGGCAATTATGTCGTTAGCCCAGTTAACCCCAGCGATAACGA
TATATTCAAAGTACCAATCTCTTACGAAAAGTTCTGGATGCTTGGTGATA
GTGCATTTTGGAGGCCAACTTGCCCAGCTGGGTATGCTCGATTTGGAATC
TTAGGCACGGTACAGGGAAAAAGGCCTGTCGACGGTGACATCTATTGTGT
CAAAGAGGAGTATACTTTGGAAGGTTCAATTGAATGGGAACTTCTCTGGA
AATGGGACCGTGATGCTTCGAACAGAGCAAAGATTTTTAAAGGAAAGTCT
GGGCAGCCCGAAAAAACAGTGGATTTGATCACAGTTTTGGTAGCCCTGAA
GAATATCCATCAAAGTCCATCGCAAAAATACCACTTTTTGTTGAAAGAAT
TTATTGTTGAGGAAAATTAAATGCTTCTAATAACGTTAATTTTGACAAAC
ATTGTTTTGGTACAATCTCAATGGTATTTGGgtgaagaaaaacaacaaaa
cacaacAAATCTTGATACAAAGGATGCTTCAAAACCTGTTCTTGTAACAT
CACCAGTCGAGTGTATTTTGAAATGCAAGAGAAAAGGAATGGACAATTTC
TATGTTAAGGATAAAAATGAATGTTTCTGTTTGAAGAGTCAAGACCAGGC
GATTAATTCAGATGGAGAATCAATGCAAGGAATCGTTTATAAACAAtatt
GTAACGAAGAAACATACGGTGATTCAAACCCATTGGTCATTAAAGATAAG
AAGAAACTAAAGATTCGCAAAGCTACCTCCACAACACCAGTTCTTCAGTG
GGCTGATTTGCACATTTATCGGTTGGACGTCAAAGCTGGGGAGCATCGGC
TAGGCGATATATTCATATTTACGGAATTGGATAACACAATGTCTGGCAAT
TATGTCGTTAGCCCAGTTAACCCCAGCGATAACGATATATTCAAAGTACC
AATCTCTTACGAAAAGTTCTGGATGCTTGGTGATAGTGCATTTTGGAGGC
CAACTTGCCCAGCTGGGTATGCTCGATTTGGAATCTTAGGCACGGTACAG
GGAAAAAGGCCTGTCGACGGTGACATCTATTGTGTCAAAGAGGAGTATAC
TTTGGAAGGTTCAATTGAATGGGAACTTCTCTGGAAATGGGACCGTGATG
CTTCGAACAGAGCAAAGATTTTTAAAGGAAAGTCTGGGCAGCCCGAAAAA
ACAGTGGATTTGATCACAGTTTTGGTAGCCCTGAAGAATATCCATCAAAG
TCCATCGCAAAAATACCACTTTTTGTTGAAAGAATTTATTGTTGAGGAAA
ATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052115-exon-scaffold_210-1491911889:160412..160699 | TCONS_00052115-exon-scaffold_210-1491911889:160412..160699 | Clytia hemisphaerica | exon |
| TCONS_00052115-exon-scaffold_210-1510915933:160412..160699 | TCONS_00052115-exon-scaffold_210-1510915933:160412..160699 | Clytia hemisphaerica | exon |
| TCONS_00052115-exon-scaffold_210-1575043694:160412..160699 | TCONS_00052115-exon-scaffold_210-1575043694:160412..160699 | Clytia hemisphaerica | exon |
| TCONS_00052115-exon-scaffold_210-1491911889:161696..161744 | TCONS_00052115-exon-scaffold_210-1491911889:161696..161744 | Clytia hemisphaerica | exon |
| TCONS_00052115-exon-scaffold_210-1510915933:161696..161744 | TCONS_00052115-exon-scaffold_210-1510915933:161696..161744 | Clytia hemisphaerica | exon |
| TCONS_00052115-exon-scaffold_210-1575043694:161696..161744 | TCONS_00052115-exon-scaffold_210-1575043694:161696..161744 | Clytia hemisphaerica | exon |
| TCONS_00052115-exon-scaffold_210-1491911889:161958..162829 | TCONS_00052115-exon-scaffold_210-1491911889:161958..162829 | Clytia hemisphaerica | exon |
| TCONS_00052115-exon-scaffold_210-1510915933:161958..162829 | TCONS_00052115-exon-scaffold_210-1510915933:161958..162829 | Clytia hemisphaerica | exon |
| TCONS_00052115-exon-scaffold_210-1575043694:161958..162829 | TCONS_00052115-exon-scaffold_210-1575043694:161958..162829 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_210 | supercontig | scaffold_210:160412..162829 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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