TCONS_00052132 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052132
Unique NameTCONS_00052132
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052132 ID=TCONS_00052132|Name=TCONS_00052132|organism=Clytia hemisphaerica|type=transcript|length=502bp
GTGGACTTCGTCTTTGAGTATTTTCATGGCTTCAAATGCAAGTTTAAGTT
TACTGCCCATGGCATCAAGTTTACGTTCCATGATGTCaaatttttccagt
ttttcaaTAATATATTTATTCTGTTGGTACGTTTGGTAGATTATTTCCTC
TTTGCTGAGGTCCTCATAAACGATTGGTGCAGCCCCTATAGTTTGAGAGG
GGGTAGCATAGTCCTCATCTGGTGGCTGATCATCATTTAGAAGGTCATCA
AAACGTTTGTTGAGGTTGACTACAGTAGGTGACATGTTTTGGGATGGTGA
AAGGAATTCTTGGGATGGTATATCTTCAAGTGTGGTTTGTTGTGATGGTG
TTTTGAGTCCTGCGTTTTTGTTAATGGATTGTTGTTGTTGGCTCAAGGTT
CTTCTTCTCTTCTTATTTTGGTTTCTCCTGGCACTGCTTcccattttgtt
tgatttaatAAATTGTTAAAATGTGATgttaaattatgttttgtagAAAT
AA
Run BLAST on NCBI

protein sequence of TCONS_00052132-protein

>TCONS_00052132-protein ID=TCONS_00052132-protein|Name=TCONS_00052132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MGSSARRNQNKKRRRTLSQQQQSINKNAGLKTPSQQTTLEDIPSQEFLSP
SQNMSPTVVNLNKRFDDLLNDDQPPDEDYATPSQTIGAAPIVYEDLSKEE
IIYQTYQQNKYIIEKLEKFDIMERKLDAMGSKLKLAFEAMKILKDEVH
Run BLAST on NCBI

transcript from alignment at scaffold_210:17818..18319

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052132 ID=TCONS_00052132|Name=TCONS_00052132|organism=Clytia hemisphaerica|type=transcript|length=502bp|location=Sequence derived from alignment at scaffold_210:17818..18319 (Clytia hemisphaerica)
TTATTTctacaaaacataatttaacATCACATTTTAACAATTTattaaat
caaacaaaatgggAAGCAGTGCCAGGAGAAACCAAAATAAGAAGAGAAGA
AGAACCTTGAGCCAACAACAACAATCCATTAACAAAAACGCAGGACTCAA
AACACCATCACAACAAACCACACTTGAAGATATACCATCCCAAGAATTCC
TTTCACCATCCCAAAACATGTCACCTACTGTAGTCAACCTCAACAAACGT
TTTGATGACCTTCTAAATGATGATCAGCCACCAGATGAGGACTATGCTAC
CCCCTCTCAAACTATAGGGGCTGCACCAATCGTTTATGAGGACCTCAGCA
AAGAGGAAATAATCTACCAAACGTACCAACAGAATAAATATATTAttgaa
aaactggaaaaatttGACATCATGGAACGTAAACTTGATGCCATGGGCAG
TAAACTTAAACTTGCATTTGAAGCCATGAAAATACTCAAAGACGAAGTCC
AC

Coding sequence (CDS) from alignment at scaffold_210:17818..18319

>TCONS_00052132 ID=TCONS_00052132|Name=TCONS_00052132|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at scaffold_210:17818..18319 (Clytia hemisphaerica)
atgggAAGCAGTGCCAGGAGAAACCAAAATAAGAAGAGAAGAAGAACCTT
GAGCCAACAACAACAATCCATTAACAAAAACGCAGGACTCAAAACACCAT
CACAACAAACCACACTTGAAGATATACCATCCCAAGAATTCCTTTCACCA
TCCCAAAACATGTCACCTACTGTAGTCAACCTCAACAAACGTTTTGATGA
CCTTCTAAATGATGATCAGCCACCAGATGAGGACTATGCTACCCCCTCTC
AAACTATAGGGGCTGCACCAATCGTTTATGAGGACCTCAGCAAAGAGGAA
ATAATCTACCAAACGTACCAACAGAATAAATATATTAttgaaaaactgga
aaaatttGACATCATGGAACGTAAACTTGATGCCATGGGCAGTAAACTTA
AACTTGCATTTGAAGCCATGAAAATACTCAAAGACGAAGTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033012XLOC_033012Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052132-exon-scaffold_210-1491911889:17818..18319TCONS_00052132-exon-scaffold_210-1491911889:17818..18319Clytia hemisphaericaexon
TCONS_00052132-exon-scaffold_210-1510915933:17818..18319TCONS_00052132-exon-scaffold_210-1510915933:17818..18319Clytia hemisphaericaexon
TCONS_00052132-exon-scaffold_210-1575043694:17818..18319TCONS_00052132-exon-scaffold_210-1575043694:17818..18319Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052132-proteinTCONS_00052132-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_210supercontigscaffold_210:17818..18319 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.134129	4.27347	2.08676	1.40106	0.762366	0.115719	0.66094	0.662135	0.0806416	0.192015	0.284938	0.287915	0.147571	0.466453	0.410889	0.128715	0.134691	0.244897	0.464868	0	0	0	1.16025	0.498092	0	0.134394	0.20557
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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