TCONS_00052183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052183
Unique NameTCONS_00052183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052183 ID=TCONS_00052183|Name=TCONS_00052183|organism=Clytia hemisphaerica|type=transcript|length=1536bp
CTTAGATTATTGTAAGTGCACAATATGAAAGAAAGGAATAAAGGATGTCT
TGCCAAAATCCATTCGACACCTCCATCATTCTGATACCTCAAGACGAAGA
TGGAATTTGTTTTTGTGGATATATCATTATTGCAAACAAAGATGAGTTTA
GAGTAAACATACACCTCAAAGAAAAAGGTTCTCTGAAAGATGCAAGGTTG
GATTGTAGCTGGGATGTTTCGCAAACACTTAAAGGGTACGAAGAAGCTAT
TCAGAAGAAGCTCAATCAAAGCTCATCAATCCACGAATTTTTGACAGAAC
TGAAAGCTCTTGTGGAAAATATCACCTCTTTCTCATCTTTGAATGACCGC
CCAGATGACATTGGCTCACATCAACTTACGGAGATTTTCCAAGAAATTGA
ACAGATAGGCTGGGACAAgtTGGTTTTCACTGACAATAATTTCGGGACTT
TGAAATTTGTGCACTGTGACAAAGAATCGAGAGAGCATATTTTGGTTCTT
GAAAGACAGGGTGCTTTTTCCGATTTTGTTGCATCGACAAATCTTCCTGT
AAACCTACAACAGAAGaaaaatGAGAAGATTCTTGTTAAATACAATAAAT
TCGTTAAGATAGTAGACAAATGTCAATTATTTTGGAATGTTCTAAAGGAT
TTGGACGAAGAATGTTGGATATTGGAGCCTGAAGTTCCATCATATGATTG
TCAATATCGAAGAATTGCACTCGGTAAGAATGCTTCATTGAGAATCGATG
TCAACCCACTGCAACCGTCCACCTTCCCAGAATGCCGTTTCCTTGGTCCT
TCTACTGttaTCGATCCattaaagcaaaatttgaataaacaCATGCACCT
ATGGGACGATCAGAAAGATTTGTTGGACAATTTACGAACAGTACTTGACA
TCGAATTCCCATCGAAGACAACCGTGGAAATCAATGAATTACGTGTTGAA
TGTGGTATTTGTTATGCATATCAACTGGAGGACGAGATTCCTGATAAAAG
TTGTGAAGATACAAGATGTGCTCAAACTTTTCACTCATCATGCTTACTTG
AGtGGATGCGATGTCTTCCCTCATTCCGTCAAAGTTTTAATGTAGTTTTT
GGTCAATGTCCATACTGTGAAAAGAAATTGACCATCAAATTGAAGAAATG
AATATCGATTGGGTGAAAAGGAGCGAAAATAAAGATTGTAGCTCGGAATA
TTACGGGCAAACAAAATTGTACAATAATTAATAATGGGTATATTTGTGGA
ACTTATTTTCTATTGCGATGGAACTATGGTATGGAGTTGTTCAAGATGAA
TATGCTAGCTATGTAGAGGAAAAAAACTTATNcacaggaaaaaattattg
attcccTAGCCTAGGGATTGTTCATTTTCAGATGTGTTTTTTTATTCGAT
CACATTAGTctagaatttaaagttcgggaaAGTAAGGAACTTAGGGAAAC
CTATTTTCCTATGCTGGAAGTGTATTACCAATGTGTTAGTGAAAACGGAT
TTCCACATGTggaaaactaatatttttaacattCTA
Run BLAST on NCBI

transcript from alignment at scaffold_212:45667..61087-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052183 ID=TCONS_00052183|Name=TCONS_00052183|organism=Clytia hemisphaerica|type=transcript|length=15421bp|location=Sequence derived from alignment at scaffold_212:45667..61087- (Clytia hemisphaerica)
CTTAGATTATTGTAAGTGCACAATATGAAAGAAAGGAATAAAGGATGTCT
TGCCAAAATCCATTCGACACCTCCATCATTCTGATACCTCAAGACGAAGA
TGGAATTTGTTTTTGTGGATATATCATTATTGCAGTAAGTATATTGAGCA
AAATCATTTTTTTGTCCAAAAACCTTTAGAACTTTGAAAACCTTCTAAAA
TGATGAATACAGGATTATCTTTTTTATTGAAATATATCTATTTTTTCAAT
ACTTTAAGTTTCTTATTTTTAAAACACATGGGCACCGGCGAGCCATTTTG
AGTGAGGGGGCCAAATATTTGGAAAAAAATGTCGCCCACCATGGTTGGGC
GACAAATAAAATTTGTCACTTTTTACACCCTCAAAACACCTTAAAACGAT
ATATATTTGGGGAGAATAATAGTTTTTGTGCTTTCATTTGGTCTCAAACC
AAATTAAAATGGTAACTCTTAAAAACGTATGACATGGTCTTCCAAAAAGG
GGGGGGGCCATGGGGCCCCATTGTAGTAAGTGCTCTGAGTTGACTTTTCA
ACGATATATACAGGAGTGTTTAGAAAATTGAACATTTCTTTCATTATTCT
CTTTAGAACAAAGATGAGTTTAGAGTAAACATACACCTCAAAGAAAAAGG
TTCTCTGAAAGATGCAAGGTCAGATTCTTATTTGGAGTATGATGATTATA
TCTATCTATAGCGCCAACAATAGCTCCTATTGAAATTTAAGGTGGTCTGG
CTTATTTAGTAAAAACTTGTCTTCATATTTTGAGTACATTGTAATTTTAA
TCATTCATTTAGGTTGGATTGTAGCTGGGATGTTTCGCAAACACTTAAAG
GGTACGAAGAAGCTATTCAGAAGGTAATNTTGTAGCTGGGATGTTTTGCA
AACACTTAAAGGGTACGAAGAAGCTATTCAGAAGGTAATTTGTTAGCATT
ACCTACAGAGGCCGAGAAGGGTCTCCATGTGAGTTCTTTTAAAAATTGTC
GAGATCTTTAAGCTGATGAGTCAAGATTTCTTTCAAACTGTTCCACCTCC
AGAATGTGTCGCAAAAACATGGTTTCAGCCCACTTTTCAGGTGCCCCTGA
AAAGCATGGTGCTCCCAACGAGTTAGGTCCCCTTGAAAAATTGCTTTGAG
TTAGGTACCCCTATTCAGCAGATAATTTCTTTGAATTGACACTTTTTGTT
CTTTTGTCATTCCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAT
AGCAAAAGATGGCGTGATGGGAAACAAAAGAAAAATTGGATGGGAAACTA
GGTGCTAGGATAAAAAAATTCAATAATTTGAAATATTTTGAAATATTCGA
TTTGGAAAATATTACCAGCCTCCAGAGCCTCCATCAAGACAGCTAGGTAC
CCTTAATGAATAGGTAACCCCAAAGAATTGCAAGGCATTAGCCCCCCTCT
ACTAACTTGGCCTAGGTGCCCTTCAGATTTCTGGGGGGGGGCTGATACCA
TGAAAAACATTTGCTTTCCCAAAAGCTGTCATATTTCCTAGAACTGCTGC
GTTTCCAAAATCTAAACTAAACTACCACTTTTTCTTGATGTGATCAGAAG
ACCTAAATTAATTATTCTTTTTAACAATGGTAAAAAAAACTCAAAAACTG
AATTTTGTGGGAATAGACGATATCGGCTTAACATGAAAAGTCAGATTTGA
CCTCCGAGAATCCCTCACAATGCGTTGCGTGGAAAAAAGTTTGCTGTGAA
ATATTTTCCACGCAAATCATTGTGGGGAATTCTCGGGGGTCAAATCTGAT
TTTTCATGTTAAGCCAATATCGTCTATGAATTTTTTCATTGTTAAAAAAT
TAGATCCCTAGGAAAGGTAGATGCATGTATATTTCATTTTACTAATGATT
TTAACACTCATGATATATATACAATATCTTCAAGGACCCATTAGCTAAAT
TGGTTGTAATTGACGTAAAATCAGTCAATAGACATTTTAATGGTGTATTT
CATGAATTTAAAAGGATGAATGAGCCAGTGACGTTTAACAAAATCTTTTC
TGATCTCACTTTAAACAATACTATAAACAATACAAAATTTGGCCCAAATG
GCGAAAATTTACCGTAAGGCTGGACTTAAAAAATTTTTGGTTTGCCGTCA
CCCGACCGACCCTACCTCGAAACCTGCCGACCCAAAAAATTTATTGCCAT
TTTAAATAAGATTTTTTTTCCTTCAAAAACTTCAAACAATAAAAAATCAA
AACTCGCATCTTGTTTGTCTCAAGCATAATTTCCCTGCTAGCACTTCTGT
TTTTTATTCAAAATTTCCTAAATGTAAACAAACTGTTAACCCTTCCATGG
ACGAAAATTTCATAAATCGCCAAAATAAAAAAAAATTCCGACCGACCGAC
CCACCTCCAAAATCTAGGGTCGGGTGATGGCAAACCAACAATTTTTTAAG
CCCAGCCTAATTCGGTCTAATGTCGACATCCCTCATCTAACTCTGACACC
CTTTTTATCAGTTGAAATTGATAGAAAGGTCAAAACTATTTTTCTTTGCT
TAGTGGTCAGAGAGGAATAATCCTCTTTCAATCAGTGATTCAAACTTTCA
TATTATTCCTGTCTCTAAAGAAGGGTGTCGGAATAACACGAGGGATGTCG
ATATTAGACCAACTTACGGTAATACCACAAAATGTAACTTTTTCTCTTTT
TTTCCGACTGCAAACATTAGTTCTCTCCGGGTTCCTTCCAATCAGAAAAA
ACTTATAATTGAATTTTTGTCTGGATAAAAGATTTCGAGGATGTTACCAA
ATTTTTCGTTCAATTTGTTGTTGTTTAAAATGATGCGACAGATTGAATAT
TAAAGCAGCTTGAACACGACAAAACATGCAATGCAGGGTAAATGCTAATT
TTTTTGGTGGCCAGGTTTCAAGGTAGGGTCAATCGGATAACAGCAAGCCA
ACACTTAAATCTAGTCTATCTCTTATTCAAGCTAGAAAATTATACCCTCT
GTTAGTCAAGTATTTCTACAATTGAAATAAATTTCATTGTCCCATATATA
GATCGAATAGCTAAAAAATAATTTTTTTATTGAAGTTCCCAATTCTTATA
TCATCATAGAAGCTCAATCAAAGCTCATCAATCCACGAATTTTTGACAGA
ACTGAAAGCTCTTGTGGTAAGTTATTATTTTTTTAATAAAAAAGGAAAAA
ACAAAACTTTTAATTTGCCTTTCTACTTTTGCCTCTTGTATTCGCTTTCT
CAACCTTTCAGATGTCTGATTTTAAAATACCAAGGAAAACTTTAAACATG
ATGGGTTTCAAATTAAAAAAAAAACACTTTAAAACAGCTTATCATAACTG
TCCCTATCGATGCGATACATAGGCTGTGCACATCCCAAGAATTGATTTTG
ATATAGGGATGCGTATCATGTATAAAAACACACGACACATGTTTTGATTG
CAATGCAAAACTTTCCATGAGTTATTTTCTTTACAGGAAAATATCACCTC
TTTCTCATCTTTGAATGACCGCCCAGATGACATTGGCTCACATCAACTTA
CGGAGATTTTCCAAGAAATTGAACAGATAGGCTGGGACAAGTAGATCAAA
TTTTTATGAAATATGAATTTAGAATTTAGGCTATTTTGCTATACTAAACA
CTTAACTTTAAGGTGTTCCTAACAAATTAAAATTTACTCAAAGTTATGAC
AAAAGATTGAAATTATTCAACTTTTCTAAAAAAGTAGTGCACGCCACTTT
TAATACAATACAATTTTTTTCAGGTTGGTTTTCACTGACAATAATTTCGG
GACTTTGAAATTTGTGCACTGGTAATTATAATTATGATTTTCACTTACCA
AGGCTCATCCAATCCCGGGACCATTGCGTTTGAAGTCAAGAAAGAGAGGA
ATCTTAACCTTTCTCAAGTAAGAAAAAGTGAAGCCTTGTTTGCCTCACAT
TTAGGACTTTTTTTGAAAACACGCGGTTCACGTGTTTTGGATGGGAAATA
AGCTGCTTTATTTCCCATCCAAGAGTTTCGGATCCAGCCCTTTTGCGGCT
TTGAAATCAATGGGGTGTACTGCCCTTGTCGACCAACAGGGCGTGCTGAA
GTTCGACAAAATAGACCCTACGTGGGACACGTAATTTTGAAAATTTTACC
AAAATTTGCGTAAAAGGTGACGCTGAATTGGACTAAAATTCCAAATATTC
TTAAAATTTGGGCATTCAACATGCTTTCCTTGTAGAAAAAAAGAAAGAAG
CCCGAAGGATTGAAAATGATATCTTGATCTTTCCTCAATCCACTTTTACG
AACAAGATTCATAAAAAGGGCTCTTCCAGAAAAAATCCGTTCATGGGGGG
TGGAGGATATATTATTTTTTTCATGAATTACCCCTGGACATTTTGATTTT
TAACCCCCTGGACAAACNNNNNNNNNNNNNNNACAAAAAATTACCCCTGG
ACATTGGAATTTACCCCCTGGACATTGCAATTTTTTGGTATTTTTTAAAT
ACCCCTGGACAATTCATCCTCCACCCCCCCATGAACGGTTTTTTTCTGGA
AGAGCCCAAATGACGTTTTTAAAGATTCACATTCATTACATCGCGACAAA
TGGGGTTTCCATGTTTTGACGTCAAAGAATCGAACGTCAGAAAAGACGGG
GGTAAACATTCGAAAATATGTCAAAAAGAAGACAAGAAAAAATAATTTGT
GATTTTTCCTAAGTAACAACGCTTATTTATTCATTTTTCATACTTCTTTG
ATGAAAGAAGTATATATTTTTGAAAAGTAAAATACTTCGTCTATCATTTA
CTCTTTTTTGAGCTCTTTACTCCAAGGATTTCTCATTTTGTCAGCCGTTG
AACTTCAGTGCTTTTTCGAACAAAATTCTTAAACCCTCCTGTGTTCCAGG
GTTCGTAGAAAATCGTGGGCATTTCTTTATCTTGCTAAGGTCCATCTTTC
TTTGAAATTCAATCTTAGACCTTTCCAAAAATGTATAACAAATACAAAGT
TTCAGGTCTGCGATGCGGTGATTTTTCACTTTGAAAAACAGAGACATTTT
TCCTTGAATTCCCCTAATGTTTGTTTACATGTCAGGGAAAACCCGCATTT
AACAATAGNTGGTGATTTTTCACTTTGAAAAACAGAGACATTTTTCCCTG
AATTCCCCTAATGGTTGTTTACATGTCAGGGAAACCCCGCATTTAACAAT
AGCAAAAAATTTGGAGGTCAAAACATTCGAAAAGTATAATCAAAGGGCTT
TCCAAATATGTATAATGTTATGGGGTTTCCTTTTGAAGAATGTTGTGATT
TTCGAACAAGAAGAGATGGCATAATAAAAACTTTTCTAAAATCTAGATTT
TGACGTAAAGGGCATAGGGAATTTTAGCATGAGTATTTCTTAGTTTTTAA
TTTCATAAAGAGTTCAAAGCATTTAAAAATCCAAAACATATTTTACATTG
ATCAACAAAAGTAAATTAAACATCGAGCTGGGTTTGATTTTCAAACTAGC
AGCCTAATTTTCAAATATTACTGGAAAATAGTCTTACTGAATGAAGAACT
TCGAAAAAAAAATACCTTTTTCGCACAAATGGCCGACAGTTCACAGATGT
TTCTAGCTACTCATTCTTTTTTGCCATTTTTCATTTCCAAATTAAATAAA
AACTTACTGGTCATCCTTGGGAGTTTTTTATATCCAAAATTGAATCACCA
TTTGATAAGAATAAATTTTAGATAAATAAAGGCTGCCTTCGATAACTGAA
TTTTGAAGGCAGGAAAGTACTGTGAAAACTGAAGCAAACAACAAAGCATT
CCATTTTATACATACCTCTTTCAATCGAATCTCAATTTAATTAATTTTAC
AACTTTCCTTTATTCTCAAGTTTTATTTTTAAGAATGAGAGTAATAATTA
AAGCACGATCAGGTTTTATTTTTTGAAAAACTCAATGTGTTCTTTTCAAA
AGCCAAAGTCTCAAATGAAACTTTTTGTTTTGATTTTGATTGCAACATTT
TCGAATCTTTCGAATGCGTGACGCAATTTGATTGGCACAAAATAGAACGC
GCGCGAAAAAACAATGCAATGCAATCTTCTCTGAGATGACAAAAATCGCA
ACACCAATTTCGCGCGATGATGTTTGGCTGAAACCTTCAAAGAATTTTTT
ATATTTTATCTTTTAGTGACAAAGAATCGAGAGAGCATATTTTGGTTCTT
GAAAGACAGGTGAGCTTGAGACTTGCTCTACAAAAATCTATGTTTTAGGC
TCATAGGATTTAGCTTTCTTCATAAGTACCACCATGCAAAAAAACTTTGC
AAAAGGCAATTCTACAGAATCGTTTCTTTACTGTTTAAGATAATAATATC
TGTCTTTTCAGGGTGCTTTTTCCGATTTTGTTGCATCGACAAATCTTCCT
GTAAACCTACAACAGAAGGTAAAGCTCTAATTCATCTCTTTGTTATAAAT
TTGTTTCTATTTTTTGGTGATTGAAATTTTTAGAAGCATTATCGGCTGGT
GAAGAATTCCTGTTTTTTCTAAATAGATCCCTGGTGGATTCCCATCCAGT
GAATTCCCACCAAGCTCCATGGCGGATTCTTACCTATTATTTTTGCTATG
TTACGTATTTTTTATCAAGCTTTTTTTAGAGAAAATTCCAGAATGAAAAA
AGCCTCGAAATGCAATTTTTCAAATATTTCTTTTCGACCACGAAAATTAG
TTCCCGCGAAAATTAGTTCCAATAGGGTAGTAGGGGGAACATTGTTCGTT
TTTCTGAGGTCGCTTGATTTTTTTAGTCAACGCAGTTGTTATACATTTTT
GAAAGCTAAGGGGTAGGTAGTAGGGGAATCAAAATAACTTGGGTGCCAAT
TTTTTTTTCGGACACTTTGGTGTGATTTTGGGACAAATATTACGGTCTCA
GGTAAAAATCATAGGGTCAAAAATTTATGAAAATTTTAGCTTGAGAAAAC
GGAAACTTGTTGTATACTTTTGGAAAGCTTTAAAAATAGTAAGATTACAG
ATGTATTGCAAGTATAGGTGATTTCTGTACCTAACTCGAGATATCAACCC
TTAAAAACAGTGTTTTCAGCCAGAAACAGCTGTTTTGTCCAGTTTTTACG
CTTTTTGGAGCTCAATATCTCAAGTTAGGTACTGAAATCACCTATCCCCG
CAATATATTTCTAATCTTAATTTTTTAAGAGCTTTCCAAAAATATACAAC
AGGTCTCTATTTTTTAAAGCTAAAATTTTCATTAAATTTTGACCCTATAA
TTTTTGCCTGAGACCGCCATATTTGTCCCAAAATCACATCAAAGTTTCCG
AAAAAAAAATGTTATTTTGATTCCCCTACCCCTTAGCTTTCCAAAAATGT
ATAACAAGTACTTCGGCTAAAAATATCGAGCGATTTTACAAACTTCCCCT
TACTAATACCCATTTTAATCATATTCTCTTTTCCAAAATGACAATTTTTC
GAACCCTAGGCAAACACGCCTGTCTCCTCCGTTCATGGCAATTTTTTTGC
GTTCTACCCTCTTTCATTGGATACCTCAGTTTATGCCTTCATTACTTACT
CTTGTATGTCTACTTTTAGCTGATTGACTTGTTCGATTGACTGAAATTTG
TCCCTGAAGACTAATTTGTCAAATAAAAGAGAATAATAACAGAAACAATT
CGTTCCCATGATTATTTGGTACTTTGCAGACCTGTCTGTAAAATACACGT
TGATCACCTGCTGGAACTGAGGAACTACTGGAGCTTTTGACTTTCACCAG
TGATAGATATTAACCATTTAAAATTTACCTAAAATACTCACAGCGTAACC
GCTCCTTCAATTTTGCTTAAATTTTGTCTGGAAGCTTGTATTATCAATAC
TTAACTCTTTTCAAGTAATTAGCATTTACCAATTACTAGATACAGTATCC
TAGGGCCTATTTAGATAAAAGAGCAATTTAGGCCGGTCTGTGAAATACAC
GATACCAACAGGTGTCAAGAATTTATCCTGAGCCCCAATAATGCATGTCA
CGTACGTGGAGTTGCCTCACAAAATTTAAGCAAAAAAATATAAGTGAATA
AAGTTAGAGGGGGGTCATGTTTTCGGTATTTTCAAAGAGTGACGTCATCA
ATGATGCCAAAATTTTAACAAAAGATGCCAATTATTTGGTGAACACTCAG
GCACACTTTCTAAAAATCGAATCAATCGGATAAATATTTCAAAGATTATC
AAAAAATTCGCCTTTGGCTTCTTTGTTGAATAGAAGGGTTAAAAGAAATT
CATCTTTTTATCTTTATTTATTTTATTTTTTTCTTCAGAAAAATGAGAAG
ATTCTTGTTAAATACAATAAATTCGTTAAGGTAAAATACTTCTATTCTGT
ATTTTCCAGTAAAGTCATCATTAAGACTTCCAAAGACTTCCAGCAACCTT
ATATTCTGACATGGATGTTGCTAAGCTGCCAAATTTCAGTCTTAACCAAA
TTGAATGTTATTCTTTCTTTTATTTAAGATAGTAGACAAATGTCAATTAT
TTTGGAATGTTCTAAAGGATTTGGACGAAGAATGTTGGATATTGGAGCCT
GAAGTTCCATCATATGATTGTCAATATCGAAGAATTGCACTCGGTATGAA
ACATAATTAAGTTTCTGATAATCTGAAATTTTATTCTGAAATCTTTATTG
TTTATATTTATTCAAAGACCTGTATCCAGCTTATGGTGTTTTAAAGTCCG
TGTCAAAAAGGTGTGCAGTGTTTAAATTTTTTACCAAAAGTTATGGCCAA
AAATAAAACAACTGCAAACTTTTTAGGCAGTAATGTGCCTTTTCGGCTTG
TTGTCTCTGTTCACTAGCTTGCCGCAAGTCGTATATTATTGCTATTAAAA
TTAGTTGATTTCGTTCCGTTCCGTATCCGGAACTCTAACTCATCTTCAAT
AAACTGTTCAATATTCTTCAAGAGTTCTGCATATTTTTCGCGTTGGATGG
TCTCCTCTTGCCGAACATCACCCAAAGGATACTTATATCTATACACCAGC
TCACCAATTGATGCTAATAGAATCACAAAAACTCCAATGAGAGCTGTATA
AATCATTAGGCCTTTATCTAAGCCGTCGAAGATCTCATGTAACGGCCTTA
TCACGTATTTGTTTGTTAATAAAGGACTGGCGATTGTTTTAGTAATGGTC
TCCTTTTCATCTTCTAACTCTTCGTCCGACATTGCCATCTCATCATCTTC
ACAATTCAAAACTGTTCTGTTATAATGAACAAACATTTTCAGACTTGTAT
CTGTCTCCAATTCACGTTCAATTACTAAATCCTTCACTTCATCTTCGTGG
TCTGCAAAGAAGGATGCTGCAGCATGTTTCTCCATCAAGCCAGCGTCTGC
AGTACCGCTTTTCACTGCGTCGATAATTTCATCGTATTCATTAACACTTA
CGGATGTACCCAATAAGTTTTTTCGCACGATCAAATCCTCGATGGATCTA
TCTATAACAGCGATGCTTTTTCCTTTTGTATCATACTGCTCGTCGATAGC
GTTCCAAGCAGAGGCTGTGATCAAAGCTACCAACATCAATCCAAAAATAA
TCCAAATGATAACAATCAATCGACTTAATGGATGTTTAGGAGTTTTATCC
CCATAACCTACAGTCGTCATAGTTACAACTGTAAACCAAAAACTGGACCA
CAATCCGGTACCGGGCGATCGGGGAAAATGATCACTCCCGGCTAGTGTCT
CAATTATCCAAACGATGGTTGCGATAATCAAGGCACAGAGTAAAGAAAAT
ACAACAGCCGTCATACATCTTTGAAATGATTTCAAAAATTTGACCAAAAG
TAGGACTTCACCCTTGCGCACTATGAGAACTGGTCGTGTGTGAATCAATT
TTGATACCTCGTAAAAATTGTCATTCAAATGTTTCATATCATTATAAGTC
ATGGGTCCAACCATTATCAAATCGTTTTCAGTAACTGTTTTACTCACATT
TAACATTTCCAAAAGTTTTGTCTCATTCTTTTCTTGAATCAAATTCAACA
TTTCTGTATGGTGAGCTATTCTGGTGATTCTTGATTCATCTGCCTTCGGA
ATGACTTGATCACACAATAGAAGGGTGCCTCGTGTAATCAAATGATTGGC
CAGTTTCCCATAAGGGTCTTGATCAAATAAATACAAATGAGTCTTGAACT
TCATATCTTCCTCTTCTGCCTTTGATGGTGTCATCAAAACGCAAATAATT
CCCATATGCAATAACTTAGTCATATTGCTAGTGAGTCTCTTTGAATTGAA
TTGTCGTGGACAGTATATTTTTTGTTTTGATAAGTAAATATGGTAAATTG
TCGCTTATTATAGCTCTCAGTACCTCATTGATCCAATAGATGGTATTATG
TTATCGCTTTGATTTTCTTTTCGTACAGATGATATATATTCGCTTCAAAG
ATTTTGTGTGTTTGATTTCTTAAAACTTTTTCTTTGAATTATTGAATTCT
TTTAGCGTGGGTCGACTTGTATATACTCCTTTGATAAAATCCCTATTGAA
ATTGTTCTCTTTCTTTGTATCAAGAAGTAATCTCGCTTCTATCGAACCTC
TACTGGTTGCCCAAATTTAATTTATTATCCTTCTCAGCATGTAACTGGGA
TGTAACTCAAAACAATTCTGACATAGCAGTTCTTCCTTTCCTTGTTTGAA
ATCAAAAATTCTTTCTGATAAAATATTGATTTTATTATTATTTTTCCTTG
CTATATTTATATTGATAACATTCATATTTCGATCGCCTTTCCACACTATA
TTGATATTTTCACATTATTTTCCGCAATTTTTTACAGCCGACATCAATAA
CTTGATTTCTTCATTCAATATGATTAACTATCGTCAAGTAACTTTTGACT
TTTTCTCTTATTCAATCAGTTAGTTATGTTAACAACAAAACGCGAACGCA
AAAGCAATCTGTTCGAAGATAGCAAGGTGTTAAAAAATTATGATGTTTTT
AGAAAGCTCCTATAAAACAAAAACAAAAAATAGAAAAATAAAACTTGTTT
TCTCCCTTTGNTAGCAAGGTGTTAAAAAATTATGATGTTTTTAGAAAGCT
CCTATAAAACAAAAACAAAAAATAGAAAAATAAAACTTGTTTTCTCCCTT
TGAATCTTGTTTTATGATGTTAAGAAGGTTCAAAAAATGAAATTATCATT
GATTTGTTCCCAAAGTTTTGGCGGAGGCCCCCGCACATCAAACGGCTCAC
TGGGACACGCGCAGAAAAATAATCTGCACCCATGCAATGAAAACTTTAAT
GAAACCATTTTCCGTTGCAAAATTCTACCGAACTCGTCATTGCCGACAGG
TTTAAGTAGTGAGGGGCACAACCCAAGACGGGTTTCCGATTCCACGTTCG
GTTCGGTTCGGTTCGTATATAACCAAGCAGGTCGGCCATGAACACACGTA
AAATGGCTAGTCGACGCCATTAGATTGGCATTGGAAAATTAATGTTTGCA
GGAGTGGAGGAAAGATATATACAAAAAAGTTTTTCTTTTTCAGGGCTACT
CTAGAAACAATCTACACTTTCTTCTCTTCTTAGGTAAGAATGCTTCATTG
AGAATCGATGTCAACCCACTGCAACCGTCCACCTTCCCAGAATGCCGTTT
CCTTGGTCCTTCTACTGGTAAGTCCGCAGTGAAGACCATTTTTAGCCTAC
CCCTAATAGACCTTATCGGAGTTTTTGATTTTTCTAAAAAAGCGATGCAT
TGTGGGATTGTTTTGAGTGTATTACAATAGAATTGTAATTACATTACATT
ATTGTAATCCACTCGAAACAATCCCACAATGCATCGCTTTTTTAGAAAAA
TCAAAACCTCCGATAAGGTCTATTAGGGGCAGGCTAAAAATGGAGAAAAA
AAATTTGGATTACCAAAGCATGGTGTAAAAGGGGCCGGTGTAAAAAGGCC
TTCCTACGCTTGTATTTTCGATACCGTCGTCGAAAGAACTTTTTTGTATT
TTCGTCACCAGTCTCCTCAAAAACTGACTGCGCCGTTAAGGGTTGATAGG
TGTTTTTCCCAGCTGGAACACAGCGTTGTTTTAACGTTAATCTAACGTTA
TATGGATGTTGTGAACGTTAGATTAACGTTGAAACAACGTTGTGTGCCAG
CTGGGTTGAAGCTTTCTCCTTAGAACTAAAAACTGTCCCATACCGCTAGA
TGTCGTATAACATAACTCTCTGTAGTTTCAAAAGTTGAAGAAAACTCGCG
GTCTCTTGAAAAATAAGTTGAAAAAGTCAACCCTTCCCAGTCGTTCTTTT
CCCTTTATACAAATGCCCAGCTCTATACCCACCCATCCACAGTATCGTAT
GGAACTTAGATAGTAGAAGAAGCGATGACGATGATAACTGGATAATGATT
GTAAAGAAATTTATATGAATGTTTTTTTTTAGTTATCGATCCATTAAAGC
AAAATTTGAATAAACACATGCACCTATGGTACGTTTTTCCTCTCTTAAAG
CAACCTGACATGCATCTGAGTTAGGCATAATTCCATGCTCGAAACTCTGC
TGCTCAATTAATTTAGACCAATGAAAATGCGATTTTATATGGATAAATTT
TAGATAAATGTTTGGTAAACTGCTGCAGGATAGTAGTCAATAGGGTGCCA
ATCTTCATTTTCAGAAAAAATTTTCTTAGGCACCACCACCCCTTTTCAGT
ACCTGGTGCTAACATTTTTGAGAATCCTCATTTGAGAAAAAAATGGACTC
AAACCCCTTATTTAAAAGCCAGTAATTAAGAAAATATTGGGTACATTACC
CTGGAATATTGCCTTACCATACACACCTAGCATTCAATTTTACCTCACCA
ATAAATATACTTCCGGTGAATGCAATCCGATTATTTTCGAGAATTTTAGC
GAAAGATTTGAGAAGTTCAAGTTCTGATTTGTCGAAATTGGGGAATCCTT
ACCCATTACCTACCTAAATCCAAAATCCAGGACAATAGCTTAAATATGAG
AGATCTACCCAGCCCACCCCAAATATAGTACCAGATATTAGTATATAGAT
ACCTCCACCCAGCTATTGGTCAGTACTCTGCAGCTGTTCCCCTGTTAATA
CTCCTAAGACTATAATTATTGTTCAATAGGGACGATCAGAAAGATTTGTT
GGACAATTTACGAACAGTACTTGACATCGAATTCCCATCGAAGACAACCG
TGGAAATCAATGTAAGGAATTTTTGATCGTAAGATCNCTCCTAAGACTAT
AATTATTGTTCAATAGGGACGATCAGAAAGGTTTGTTGGACAATTTACGA
ACAGTACTTGACATCGAATTCCCATCGAAGACAACCGTGGAAATCAATGT
AAGGAATTTTTGATCGTAAGATCTACTTTGATCAATATAGAAAGGTTCCA
GAAAAACCTAACCTGGAGTCCGCTTAGGGCTCTTGATAGACTGGATGGTG
CGATTAGGTGGCCCGGTAGTACATAGACAGCTACAGCTGCCTGAACTTTG
CTCTGATGATTTTGAAGTAGACTAGAGGACATCGTAATCTTGAATTAATT
CTAAATTCTAAAACCCAGTCAAAGTTTACAAAACTATATTAGCAACATCA
AAATACCTCCTAAATTTGAAAAAAATAGTCTAATGGTCATATTTTTCTGT
AAGTTTAGCTCCAAAAAGAGACTGGATCTACTGGCATAGATTTGCTACCA
CCTCAAGCAAAGTCAAAAAATAGAGTCTGCTAAATTACGCCAGGCCATTT
ATCAGCCCTATCCAGTCCATCAATAAGCTACATGTGCATTTAAAAGTTGC
AAGTTGCGACTACATTTAAGGGAACTAATTTTCGCGGGAACTAATTTTTG
CTGAACTTATTTTCGAGGTACAAGGATTCTAAATTGGCCTATTTTGCGGA
ACTAATTTTCGCGGCTGGCACACACTTTTCGCCGAAATTCTTTCGTATTC
CTTGGTTTTTTTGAAGGTTTTTGGTAAATTTACATTTTTCGGAACTAATT
TTCGCGGTAGACACCCAAAAATGCGAAAATTATTTCTCTTTACATTTATC
TGGAATAGTAAAAATTGAGTGCGAAACCTGACGTTTCTTTTCGCAGGAAT
TACGTGTTGAATGTGGTATTTGTTATGCATATCAACTGGAGGACGAGATT
CCTGATAAAAGTTGTGAAGATACAAGATGTGCTCAAACTTTTCACTCATC
ATGCTTACTTGAGGTAAAATCAATGTCGAGAATTATTTTACTTCTAGTTT
TTTCTTGTTAGCGATTTTTCAAGTTAGCAATAATCATATTTTTGTACATT
ACTCATTACTTCGAGGCTAAACGTAGATTATAGTCCGATAGAATTAGCTC
ATAAAAGGCCCTAACCTTGAAATTAATCATATGTGGCTGAAGTTTGGAAC
CAAGAACCAACATAAAAACTGTTGTTGCATTTTTATGTTGACCTCAATTT
TCAGTACAAACCTCTACAAACAAGATTTCCAAAAGAGATTTGAGCGTTTC
GATGGTTAGATCAATAGATAAATGGATTTTAAAGATCAATTATTTTTGAT
GAGTCAGTACACTTTAAGCAAATTAAGTCAGCAGAACTTTAAAAATCTTG
GTTTAATCACTTAAACTAGGCTTTATATGAGTTTTCCTTATTTTCATTTT
CCAGTGGATGCGATGTCTTCCCTCATTCCGTCAAAGTTTTAATGTAGTTT
TTGGTCAATGTCCATACTGTGAAAAGGTAATTTCATTCTTTTAATGTTTG
AGTTGAGTGTATAAATGCTTTCAAATGACTAGCCTCCAAATGGGTGTAGC
CGACTTTGTTGTGCAATGAAATTTCTTTTGACTAAATTATCTTGGTTACT
TTTCTTTAGAAATTGACCATCAAATTGAAGAAATGAATATCGATTGGGTG
AAAAGGAGCGAAAATAAAGATTGTAGCTCGGAATATTACGGGCAAACAAA
ATTGTACAATAATTAATAATGGGTATATTTGTGGAACTTATTTTCTATTG
CGATGGAACTATGGTATGGAGTTGTTCAAGATGAATATGCTAGCTATGTA
GAGGAAAAAAACTTATNCACAGGAAAAAATTATTGATTCCCTAGCCTAGG
GATTGTTCATTTTCAGATGTGTTTTTTTATTCGATCACATTAGTCTAGAA
TTTAAAGTTCGGGAAAGTAAGGAACTTAGGGAAACCTATTTTCCTATGCT
GGAAGTGTATTACCAATGTGTTAGTGAAAACGGATTTCCACATGTGGAAA
ACTAATATTTTTAACATTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033044XLOC_033044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052183-exon-scaffold_212-1575043694:60954..61087TCONS_00052183-exon-scaffold_212-1575043694:60954..61087Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1575043694:60420..60481TCONS_00052183-exon-scaffold_212-1575043694:60420..60481Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1575043694:60215..60275TCONS_00052183-exon-scaffold_212-1575043694:60215..60275Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1575043694:57722..57778TCONS_00052183-exon-scaffold_212-1575043694:57722..57778Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1575043694:57298..57401TCONS_00052183-exon-scaffold_212-1575043694:57298..57401Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1575043694:57067..57114TCONS_00052183-exon-scaffold_212-1575043694:57067..57114Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1575043694:54679..54721TCONS_00052183-exon-scaffold_212-1575043694:54679..54721Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1575043694:54470..54526TCONS_00052183-exon-scaffold_212-1575043694:54470..54526Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1575043694:52558..52599TCONS_00052183-exon-scaffold_212-1575043694:52558..52599Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1575043694:52295..52409TCONS_00052183-exon-scaffold_212-1575043694:52295..52409Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1575043694:49271..49354TCONS_00052183-exon-scaffold_212-1575043694:49271..49354Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1575043694:48460..48505TCONS_00052183-exon-scaffold_212-1575043694:48460..48505Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1575043694:47727..47808TCONS_00052183-exon-scaffold_212-1575043694:47727..47808Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1575043694:46725..46841TCONS_00052183-exon-scaffold_212-1575043694:46725..46841Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1575043694:46212..46283TCONS_00052183-exon-scaffold_212-1575043694:46212..46283Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1575043694:45667..46078TCONS_00052183-exon-scaffold_212-1575043694:45667..46078Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:60954..61087TCONS_00052183-exon-scaffold_212-1510915933:60954..61087Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:60420..60481TCONS_00052183-exon-scaffold_212-1510915933:60420..60481Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:60215..60275TCONS_00052183-exon-scaffold_212-1510915933:60215..60275Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:57722..57778TCONS_00052183-exon-scaffold_212-1510915933:57722..57778Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:57298..57401TCONS_00052183-exon-scaffold_212-1510915933:57298..57401Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:57067..57114TCONS_00052183-exon-scaffold_212-1510915933:57067..57114Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:54679..54721TCONS_00052183-exon-scaffold_212-1510915933:54679..54721Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:54470..54526TCONS_00052183-exon-scaffold_212-1510915933:54470..54526Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:52558..52599TCONS_00052183-exon-scaffold_212-1510915933:52558..52599Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:52295..52409TCONS_00052183-exon-scaffold_212-1510915933:52295..52409Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:49271..49354TCONS_00052183-exon-scaffold_212-1510915933:49271..49354Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:48460..48505TCONS_00052183-exon-scaffold_212-1510915933:48460..48505Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:47727..47808TCONS_00052183-exon-scaffold_212-1510915933:47727..47808Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:46725..46841TCONS_00052183-exon-scaffold_212-1510915933:46725..46841Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:46212..46283TCONS_00052183-exon-scaffold_212-1510915933:46212..46283Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1510915933:45667..46078TCONS_00052183-exon-scaffold_212-1510915933:45667..46078Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:60954..61087TCONS_00052183-exon-scaffold_212-1491911889:60954..61087Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:60420..60481TCONS_00052183-exon-scaffold_212-1491911889:60420..60481Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:60215..60275TCONS_00052183-exon-scaffold_212-1491911889:60215..60275Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:57722..57778TCONS_00052183-exon-scaffold_212-1491911889:57722..57778Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:57298..57401TCONS_00052183-exon-scaffold_212-1491911889:57298..57401Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:57067..57114TCONS_00052183-exon-scaffold_212-1491911889:57067..57114Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:54679..54721TCONS_00052183-exon-scaffold_212-1491911889:54679..54721Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:54470..54526TCONS_00052183-exon-scaffold_212-1491911889:54470..54526Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:52558..52599TCONS_00052183-exon-scaffold_212-1491911889:52558..52599Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:52295..52409TCONS_00052183-exon-scaffold_212-1491911889:52295..52409Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:49271..49354TCONS_00052183-exon-scaffold_212-1491911889:49271..49354Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:48460..48505TCONS_00052183-exon-scaffold_212-1491911889:48460..48505Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:47727..47808TCONS_00052183-exon-scaffold_212-1491911889:47727..47808Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:46725..46841TCONS_00052183-exon-scaffold_212-1491911889:46725..46841Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:46212..46283TCONS_00052183-exon-scaffold_212-1491911889:46212..46283Clytia hemisphaericaexon
TCONS_00052183-exon-scaffold_212-1491911889:45667..46078TCONS_00052183-exon-scaffold_212-1491911889:45667..46078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_212supercontigscaffold_212:45667..61087 -
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00052183 vs. Swiss-Prot (Human)
Match: FANCL (E3 ubiquitin-protein ligase FANCL OS=Homo sapiens GN=FANCL PE=1 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 2.770e-89
Identity = 134/355 (37.75%), Postives = 209/355 (58.87%), Query Frame = 3 
Query:   78 ILIPQDEDGICFCGYIIIANKDEFRVNIHLKEKGSLKDARLDCSWDVSQTLKGYEEAIQKKLNQSSSIHEFLTELKALVE----NITSFSSLNDRPDDIGSHQLTEIFQEIEQIGWDKLVFTDNNFGTLKFVHCDKESREHILVLERQGAFS----DFVASTNLPVNLQQKKNEKILVKYNKFVKIVDKCQLFWNVLKDLDEECWILEPEVPSYDCQYRRIALGKNASLRIDVNPLQPSTFPECRFLGPSTVIDPLKQNLNKHMHLWDDQKDLLDNLRTVLDIEFPSKTTVEINELRVECGICYAYQLEDEIPDKSCEDTRCAQTFHSSCLLEWMRCLPSFRQSFNVVFGQCPYC 1118
            +L+PQ+     + G+I    +D F + I L E   LK+ARL CSW +   L GY   +Q+++  S  +  F+ ELK L+E    N     +L   P    S     + +EI  +GWDKLV+ D  F T+K    D   REH++ L+ +  +     D+     +P          ++  Y++F+  ++  + FW+V+ ++DE+ W+LEPE P      RRIALG N S+ I+V+P  P+  PEC FLG   V+ PL   L++++HLWD +  +L NL+ VL+I+FP++  +E ++  ++CGICYAYQL+  IPD+ C++++C Q FH  CL EW+R L + RQSFN++FG+CPYC
Sbjct:   14 LLLPQNRSKTVYEGFISAQGRD-FHLRIVLPEDLQLKNARLLCSWQLRTILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSS-----LIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECPYC 362
The following BLAST results are available for this feature:
BLAST of TCONS_00052183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FANCL2.770e-8937.75E3 ubiquitin-protein ligase FANCL OS=Homo sapiens ... [more]
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