TCONS_00052197 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052197
Unique NameTCONS_00052197
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052197 ID=TCONS_00052197|Name=TCONS_00052197|organism=Clytia hemisphaerica|type=transcript|length=380bp
NAGACCGCATACATCTTAGAAGGAAGATCACTCGTCAACTTCATACGTTC
TTCATGTCCACGCTGTCGCTATATCAACAAAAAGACAATCGCTGTGGAAA
TGGGACTACTTTCACAAGACAACCTCATCATCGCACCTGCATTTTACATA
TCACAAGTGGATCTTGCAGGACCATTTTCAAGCTATTCGCAACATCACAA
ACGCACTACCGTAAAGATATGGCTGGTTGTATTCTGTTGCGCCACAACAA
CTGCTGTTAACATCAAAGTAATGGAGGATTACTCTACTACGTCGTTTTTG
CAAGCCTTCACACGTTTCTCCTGTCAGGTTGGATATCCTAACAAACTTCT
GGCAGACGAAGGAGGTCAGCTCATCAAGGG
Run BLAST on NCBI

protein sequence of TCONS_00052197-protein

>TCONS_00052197-protein ID=TCONS_00052197-protein|Name=TCONS_00052197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
XTAYILEGRSLVNFIRSSCPRCRYINKKTIAVEMGLLSQDNLIIAPAFYI
SQVDLAGPFSSYSQHHKRTTVKIWLVVFCCATTTAVNIKVMEDYSTTSFL
QAFTRFSCQVGYPNKLLADEGGQLIK
Run BLAST on NCBI

transcript from alignment at scaffold_212:107341..107720

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052197 ID=TCONS_00052197|Name=TCONS_00052197|organism=Clytia hemisphaerica|type=transcript|length=380bp|location=Sequence derived from alignment at scaffold_212:107341..107720 (Clytia hemisphaerica)
CCCTTGATGAGCTGACCTCCTTCGTCTGCCAGAAGTTTGTTAGGATATCC
AACCTGACAGGAGAAACGTGTGAAGGCTTGCAAAAACGACGTAGTAGAGT
AATCCTCCATTACTTTGATGTTAACAGCAGTTGTTGTGGCGCAACAGAAT
ACAACCAGCCATATCTTTACGGTAGTGCGTTTGTGATGTTGCGAATAGCT
TGAAAATGGTCCTGCAAGATCCACTTGTGATATGTAAAATGCAGGTGCGA
TGATGAGGTTGTCTTGTGAAAGTAGTCCCATTTCCACAGCGATTGTCTTT
TTGTTGATATAGCGACAGCGTGGACATGAAGAACGTATGAAGTTGACGAG
TGATCTTCCTTCTAAGATGTATGCGGTCTN

Coding sequence (CDS) from alignment at scaffold_212:107341..107720

>TCONS_00052197 ID=TCONS_00052197|Name=TCONS_00052197|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_212:107341..107720 (Clytia hemisphaerica)
CTTGATGAGCTGACCTCCTTCGTCTGCCAGAAGTTTGTTAGGATATCCAA
CCTGACAGGAGAAACGTGTGAAGGCTTGCAAAAACGACGTAGTAGAGTAA
TCCTCCATTACTTTGATGTTAACAGCAGTTGTTGTGGCGCAACAGAATAC
AACCAGCCATATCTTTACGGTAGTGCGTTTGTGATGTTGCGAATAGCTTG
AAAATGGTCCTGCAAGATCCACTTGTGATATGTAAAATGCAGGTGCGATG
ATGAGGTTGTCTTGTGAAAGTAGTCCCATTTCCACAGCGATTGTCTTTTT
GTTGATATAGCGACAGCGTGGACATGAAGAACGTATGAAGTTGACGAGTG
ATCTTCCTTCTAAGATGTATGCGGTCTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033049XLOC_033049Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052197-exon-scaffold_212-1491911889:107341..107720TCONS_00052197-exon-scaffold_212-1491911889:107341..107720Clytia hemisphaericaexon
TCONS_00052197-exon-scaffold_212-1510915933:107341..107720TCONS_00052197-exon-scaffold_212-1510915933:107341..107720Clytia hemisphaericaexon
TCONS_00052197-exon-scaffold_212-1575043694:107341..107720TCONS_00052197-exon-scaffold_212-1575043694:107341..107720Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052197-proteinTCONS_00052197-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_212supercontigscaffold_212:107341..107720 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65978	4.04636	1.64437	2.29823	5.87554	2.43201	2.40064	3.74576	4.02115	5.41397	6.51611	3.45438	4.00151	3.00924	0.235619	0.252855	0	0.478912	0.220548	0.461574	0.401192	0.587062	0.237884	0.648812	6.90536	4.77126	0.568971	0.303611	0.921112	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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