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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052232 ID=TCONS_00052232|Name=TCONS_00052232|organism=Clytia hemisphaerica|type=transcript|length=571bp
GGACGGCATACGACTTAAAAAGTATCATGCAATACACTCGTAAAACTTTC
ATCGCGGGTGCAAACCTGGATGCAACGATGGAATCTATAGCTGACCCAAA
CATGGAATTAGGAAGTCTAGAATTGTCACCGATAGATGTTATTGAGTTGA
AACAACATTACCATTGTGATGTCTCTTCTGGTTGGTCCACATGGTCCGAA
TATCAACCCTGTATTCAACAACAGTGGGGAGACTACCATTGCACCAGCTC
CAGGGTCCGCATATGCTTTGGTACATCAACTTGCGCTGGGGCCGACGGTT
ATGGTGTACAAGAAGAATCGAGAAATTGTAAAGCTGATTCCAAACTCTCC
AAAACATGTCTTTATCCAGCAGTTGATGGTGTTTGGGCAACTTGGGGTCA
TTGGTCTAAATGTTTCTCAGAAAATTTCGTATGTGGACCTGGTGTCCAGT
CAAGAGAGAGGACATGCAATAACCCTGAGCCTTCAAATGGTGGAAAAGAT
TGTGTGGGTGGTTTCGTTGAGAAAAGAGTCTGTAGGAATCAAGATTGTCC
AGACAaaaaaaactcaGTTGG Run BLAST on NCBI transcript from alignment at scaffold_213:259440..261800+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052232 ID=TCONS_00052232|Name=TCONS_00052232|organism=Clytia hemisphaerica|type=transcript|length=2361bp|location=Sequence derived from alignment at scaffold_213:259440..261800+ (Clytia hemisphaerica)
GGACGGCATACGACTTAAAAAGTATCATGCAATACACTCGTAAAACTTTC
ATCGCGGGTGCAAACCTGGATGCAACGATGGAATCTATAGCTGACCCAAA
CATGGAATTAGGAAGTCTAGAATTGTCACCGATAGATGTTATTGAGTTGA
AACAACATTACCATTGTGATGGTTAGTATTAATCTTAATTTTGGTATGTC
CGTTTTTACCGTTTAAGTTTTCCTCTCGCTTTTTGATTGACCGGTCAACG
ACAGtttactctctataattcgatcttcaagggaccatgAATTTTCGTCg
tattagagaaagattcgaattacagagagtaattcaTACCACTTCCAGCT
CAGGGGATCaaaattttagttcgaattacagaacgATTCGAATATTAGAG
GTTCAAGTCAGAGAAAGATGACTTTAGTTTTAAGAGTGGCTTACCTCACT
CATCACATTGTACCACAAAAGAATCTACGTATCTTGAGCAGGCCcccaaa
ataaaatttagtgCCTGATTTTCTATTCTATGGAGAATTCTTACATCTAA
AAGATTTTTATGCCCGCTTTAGATTTATTAATCTGTGTTAAAACAGGACA
AGGCTATGTATCCAACAACTATTTCCCTCTTTTCTCTTACAGTCTCTTCT
GGTTGGTCCACATGGTCCGAATATCAACCCTGTATTCAACAACAGTGGGG
AGACTACCATTGCACCAGCTCCAGGGTCCGCATATGCTTTGGTACATCAA
CTTGCGCTGGGGCCGACGGTTATGGTGTACAAGAAGAATCGAGAAATTGT
AAAGCTGATTCCAAACTCTCCAAAACATGTCTTTGTATGTAATGTAATGA
TTTTATACTATTCTCTAAAGTTCGTACATCCTTTAGAAGAACGCATTGAG
TGTCTGTGTCAAATTCTAAGTACTtttaaaattgccaaaaaaactCCGGT
TACCAAGGTCAGACCCGCtgaaaaaatttggttaaaatttcgtCCCTGTT
AGAAAAATACCCCACTAGGAAGAtgactttcatttcatccccattcgaaa
tttgatatgaaatattGCATTCCCAAACCATCCCCACTAGATATTTCAAG
CTTGNaaaatttggctaaaatttcgtcCCTGTTAGAAAAATACCCCACTA
GGAAGAtgactttcatttcatccccattcgaaatttgatatgaaatattG
CATTCCCAAACCATCCCCACTAGATATTtcaagcttggaacaatagaata
tatatccccattgagatttcgatataactttttatccccgctgtgggAAA
AAGGTCCACCGGgggtgtgagacaggggtgttgttaACTTCGACAATTCC
TACAAGCTATGGTGTCTTTTGTGCTTATTCAGCCCTTTGTTCTCTTTGAA
AAACATCCCTGACCCAGATTGTTTTTGACTGGCCTAAGTTCATtgcagtt
ttgaaaatttgaaaaaacaatttaggCCATAAATTATCTATGTGGTAATT
TCTATAAACAGATCCAGCAGTTGATGGTGTTTGGGCAACTTGGGGTCATT
GGTCTAAATGTTTCTCAGAAAATTTCGTATGTGGACCTGGTGTCCAGTCA
AGAGAGAGGACATGCAATAACCCTGAGCCTTCAAATGGTGGAAAAGATTG
TGTGGGTGGTTTCGTTGAGAAAAGAGTCTGTAGGAATCAAGATTGTCCAG
ACAGTAAGTAGAAAAAATTTCTACCCTCTTCTTTTCACTTGtagatttgt
ttatttttgtccaACTGAGTACTAATTTTCTCGTGGTTTTGAGGAAACTC
AGGCTTAATTTCCCCTAGGtcacttttaaaatctttgacATTTTACGAGT
GAAACgattaggaaaatttcaaaatgttgctgTAATTAGTATTAGATTTT
CAAACAATTAGGAAATGCTGTaacattgaaattttggtacaaaCGAACAC
TGAGAAACTACAAAACAGCGAGAAATTTAGTTAGACAGCGAGAAATTATA
AAAACAGGGGAAAATTTCAGATAAACGTAAGAGAAAtgccaatcgaattt
caatttacCATGATATTAAGTGTACACGTTTAACATACAGCTTTGGTGGG
GCACCAGGGTCGATTTCTACCCCCCCCCTGCCCAATGCATCACTTTTACG
GATAGGCCCAAGTTTGCCTTTTTAGTTTGATTTAGGTTTTCATGTCTCAA
AGAAATGCCATCAACGTGAAATGTTATCGTCAATTGAAATCTAAGATAAT
AACCGGTAAGTAAACTGCAACCACAAATAGTTTAATTACCGTGAATGTTG
CCGATTTAGGTTTTGCATTTGAACTCaccaatttatattttttagaaaaa
aactcaGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052232-exon-scaffold_213-1491911889:259440..259610 | TCONS_00052232-exon-scaffold_213-1491911889:259440..259610 | Clytia hemisphaerica | exon |
| TCONS_00052232-exon-scaffold_213-1510915933:259440..259610 | TCONS_00052232-exon-scaffold_213-1510915933:259440..259610 | Clytia hemisphaerica | exon |
| TCONS_00052232-exon-scaffold_213-1575043694:259440..259610 | TCONS_00052232-exon-scaffold_213-1575043694:259440..259610 | Clytia hemisphaerica | exon |
| TCONS_00052232-exon-scaffold_213-1491911889:260082..260273 | TCONS_00052232-exon-scaffold_213-1491911889:260082..260273 | Clytia hemisphaerica | exon |
| TCONS_00052232-exon-scaffold_213-1510915933:260082..260273 | TCONS_00052232-exon-scaffold_213-1510915933:260082..260273 | Clytia hemisphaerica | exon |
| TCONS_00052232-exon-scaffold_213-1575043694:260082..260273 | TCONS_00052232-exon-scaffold_213-1575043694:260082..260273 | Clytia hemisphaerica | exon |
| TCONS_00052232-exon-scaffold_213-1491911889:260951..261142 | TCONS_00052232-exon-scaffold_213-1491911889:260951..261142 | Clytia hemisphaerica | exon |
| TCONS_00052232-exon-scaffold_213-1510915933:260951..261142 | TCONS_00052232-exon-scaffold_213-1510915933:260951..261142 | Clytia hemisphaerica | exon |
| TCONS_00052232-exon-scaffold_213-1575043694:260951..261142 | TCONS_00052232-exon-scaffold_213-1575043694:260951..261142 | Clytia hemisphaerica | exon |
| TCONS_00052232-exon-scaffold_213-1491911889:261785..261800 | TCONS_00052232-exon-scaffold_213-1491911889:261785..261800 | Clytia hemisphaerica | exon |
| TCONS_00052232-exon-scaffold_213-1510915933:261785..261800 | TCONS_00052232-exon-scaffold_213-1510915933:261785..261800 | Clytia hemisphaerica | exon |
| TCONS_00052232-exon-scaffold_213-1575043694:261785..261800 | TCONS_00052232-exon-scaffold_213-1575043694:261785..261800 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:259440..261800 + |
Blast
BLAST of TCONS_00052232 vs. Swiss-Prot (Human)
Match: TSP1 (Thrombospondin-1 OS=Homo sapiens GN=THBS1 PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 1.788e-16 Identity = 48/126 (38.10%), Postives = 62/126 (49.21%), Query Frame = 3
Query: 180 GWSTWSEYQPCIQQQWGDYHCTSSRVRICFGTSTCAGADGYGVQEESRNCKADSKLSKTCLYPA--VDGVWATWGHWSKCFSENFVCGPGVQSRERTCNNPEPSNGGKDCVGGFVEKRVCRNQDCP 551
GWS WS + C GD T R+R+C S Q + C+ +++ +K C A ++G W W W C + CG GVQ R R CNNP P GGKDCVG E ++C QDCP
Sbjct: 437 GWSHWSPWSSC-SVTCGDGVIT--RIRLCNSPSP---------QMNGKPCEGEARETKACKKDACPINGGWGPWSPWDIC---SVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDCP 547
The following BLAST results are available for this feature:
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