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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052245 ID=TCONS_00052245|Name=TCONS_00052245|organism=Clytia hemisphaerica|type=transcript|length=5989bpRun BLAST on NCBI protein sequence of TCONS_00052245-protein >TCONS_00052245-protein ID=TCONS_00052245-protein|Name=TCONS_00052245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1842bp MNTAPAKNTDVPDGSHANKKNHRHSYASEPTCFPKRPSWNEESDESDADDRun BLAST on NCBI transcript from alignment at scaffold_213:455016..480813+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052245 ID=TCONS_00052245|Name=TCONS_00052245|organism=Clytia hemisphaerica|type=transcript|length=25798bp|location=Sequence derived from alignment at scaffold_213:455016..480813+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_213:455016..480813+ >TCONS_00052245 ID=TCONS_00052245|Name=TCONS_00052245|organism=Clytia hemisphaerica|type=CDS|length=110580bp|location=Sequence derived from alignment at scaffold_213:455016..480813+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052245 vs. Swiss-Prot (Human)
Match: LRRK2 (Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens GN=LRRK2 PE=1 SV=2) HSP 1 Score: 255.758 bits (652), Expect = 4.865e-68 Identity = 211/707 (29.84%), Postives = 354/707 (50.07%), Query Frame = 1
Query: 364 IGRLDVSDNELTVIPPGLPCLAPNLSRLVISKNKITEVDSLSSLPEHLMALDISDNHLKYFN---LMAGKEAEIVN---NICYAL--------VRKHSRNSFPQGKQRKTCLHRKHKQLTELNRLMLNKNSLESL-------QVCLRN----------TDKERPNVLFPDLKILDISHNKLSKVPPGIGRLKXXXXXXXXXXXXXTVLPSELGLCNGLYELKIESLHLKDPPKNVIENAMHDGRVDVRSLIGYLKSLHDNAQLYPNIKLMIVGTHGIGKTTLLHALRKEGQGTFKDVDYQCHFNDRRRSQKCLDKGNKSTVGVDVSDWIY----GKKLQIKFSTWDFAGQTEYYATHQCFLSKRALYLVMWRLTDGLDGIDSMQQWLLNIQERAPNCSVIIVGTFLDEA-ENKRKNYVEDMRKEIYKRFVSTKCGGSVPDLAKKGLPKVVQVIEVNSKSQR-SVARVRQLIYDTVVALKANKNSSTSLLETKIPKSYIDVEKAVTKIMDELNSRHDMPVLNEAKFRKKVLEHLTLTGCDLRNGTEELDQAVQFLHDYGILLHYDDPALR--DLYFVDPQWLCDMLAHVVTVRSVN-PFIKNGVLKISDLKSQIFKGEKRFPTDMVMKYVELMSKFEVAIKISEKFLLIPSLLPDKQKECTVIAENESEELRKAMNVNAYLNGSVLRRQYLMSYVPSGFWARLLTRLI 2364
+ + ++S N+L+ +P L + L +L++ NKI+ + S L E L L++S NH+ + L A + E + N A+ + K S+N F +C+ L L L ++ N ++ L + LR D L+ ++ L +SHNKL ++PP IG L+NL+SL +S+N L P+E+G + +++L ++ LHL K++ A + +I +L+ A Y +KLMIVG G GKTTLL L K + D+ Q +TVG+DV DW +K + + WDFAG+ E+Y+TH F+++RALYL ++ L+ G +D+M+ WL NI+ RA + VI+VGT LD + E +RK + + KE+ L K+G P + VN+ + ++A++R+ I + + K L IP Y+++EK + L+ R ++P+ RK++L+ + L+ EL AV FL++ G+LLH+ DPAL+ DLYFV+P+WLC ++A ++TV+ P G++ D++ + +++FP + + +Y +L+ KF++A+ I E++LL+PS L D R + + N ++ R Y M Y P GFW+RL+ RL+
Sbjct: 1085 LKQFNLSYNQLSFVPENLTDVVEKLEQLILEGNKISGICSPLRLKE-LKILNLSKNHISSLSENFLEACPKVESFSARMNFLAAMPFLPPSMTILKLSQNKF-------SCIPEAILNLPHLRSLDMSSNDIQYLPGPAHWKSLNLRELLFSHNQISILDLSEKAYLWSRVEKLHLSHNKLKEIPPEIGCLENLTSLDVSYNLELRSFPNEMGKLSKIWDLPLDELHLNFDFKHIGCKA--------KDIIRFLQQRLKKAVPYNRMKLMIVGNTGSGKTTLLQQLMKTKKS---DLGMQ-----------------SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKEL---------------LNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKIRDQLVVGQL---IPDCYVELEKII------LSERKNVPIEFPVIDRKRLLQ--LVRENQLQLDENELPHAVHFLNESGVLLHFQDPALQLSDLYFVEPKWLCKIMAQILTVKVEGCPKHPKGIISRRDVE-KFLSKKRKFPKNYMSQYFKLLEKFQIALPIGEEYLLVPSSLSDH---------------RPVIELPHCENSEIIIRLYEMPYFPMGFWSRLINRLL 1713 HSP 2 Score: 120.168 bits (300), Expect = 9.903e-27 Identity = 98/376 (26.06%), Postives = 177/376 (47.07%), Query Frame = 1
Query: 3253 EEASKLIRDNKPLLCPFHLQLEAKNVFPDLCFMDLDKSHIIAHDQLKEGK----FLGRGSYGDVFMAELTLDNHPNKNQDRHNNQPKTIQVAMKIPMNSEKEKNRKMMATMFSYDTYRNVRQELSILGNINHVNIIRFYGVSVSPFAMLLELAPMGAVDDRYKEYRRVGKRIHPFTIQKSLQ-QISSALKYLHRHHIIYRDLKAENVLVLAFPGPNLVDPIHHQVLLKLTDYGISRSVSLGGIKGFLGTPGFMAPEILRYTGKESYTDKVDCFSFGSLIYELIALHHPFSDVANDKARLAQIYMQNGKRPRLTSKEKRSPVLLL-SLLYRCWAQHPEDRPSAAEINALCSLEEFPKLADTIGLAEDFNFQCVTTTN 4362
EE L+ ++P L + + PDL DL ++ ++ +D+L+ + LG GS+G V+ A + +VA+KI + + R +RQEL +L +++H ++I + P +++ELA G++D ++ + R T+Q + ++ L+YLH IIYRDLK NVL+ PN ++ K+ DYGI++ GIK GTPGF APE+ R G Y + D +SFG L+Y+++ + ++ +Q GK P + +P ++ L+ +C ++P++RP++A++ + + E L I L ++ +C+ T+
Sbjct: 1835 EEGDLLVNPDQP-----RLTIPISQIAPDLILADLPRNIMLNNDELEFEQAPEFLLGDGSFGSVYRAAYEGE-----------------EVAVKI---------------FNKHTSLRLLRQELVVLCHLHHPSLISLLAAGIRPRMLVMELASKGSLDRLLQQDKASLTR----TLQHRIALHVADGLRYLHSAMIIYRDLKPHNVLLFTL-YPNAA------IIAKIADYGIAQYCCRMGIKTSEGTPGFRAPEVAR--GNVIYNQQADVYSFGLLLYDILTTGGRIVEGLKFPNEFDELEIQ-GKLPDPVKEYGCAPWPMVEKLIKQCLKENPQERPTSAQVFDILNSAELVCLTRRILLPKNVIVECMVATH 2159 The following BLAST results are available for this feature:
BLAST of TCONS_00052245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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