TCONS_00052247 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052247
Unique NameTCONS_00052247
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052247 ID=TCONS_00052247|Name=TCONS_00052247|organism=Clytia hemisphaerica|type=transcript|length=635bp
GCCGAAACAAGGTATCTTTTAAGTTATAATGATGaaccaaaaaacaaaat
tttgaataatttgataaTTAATAAAAGTTGTTAATTAAAATAAGTTGTTA
ATTAAAATAAGTcgttattgaaaaataaaaacagttaaTAGAAATAAAGG
CACGTTGAACCTGAACCCGAGACCTGTAAATTTTTTCGTGAAATTTATAA
AGTCAACAATTTAAAATAACAGTGAGTTAAAAGCCTCTAATAGTAATTTG
ATCctcacaaaaataaatttctataTTCAAAGCAGTGATGGATTTCTGGT
GACATGGGGCATCTGAGTAAGATTTTAAATGGAAATGTAAATGTTTGaag
taaaactttttaaaaactgtttaaaattaTCATAATAAAAGTATAGAAAC
TAGAAAATAACTAGAAAATGTTAATACTAGCAGTGGGCTATAGAGacctt
tcttttcaaaattaagtttgcataattttttttggttggttgggacccaa
ataacataaatctaagatatttttggatatttccaaatgcccaaaatggg
ccattttcgggccattttgcttggaaaaaaaatctaaaacctgctgtgtt
ggtgctacaacCATCAAATTAGGCTCAAAATGATC
Run BLAST on NCBI

transcript from alignment at scaffold_213:596910..597544+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052247 ID=TCONS_00052247|Name=TCONS_00052247|organism=Clytia hemisphaerica|type=transcript|length=635bp|location=Sequence derived from alignment at scaffold_213:596910..597544+ (Clytia hemisphaerica)
GCCGAAACAAGGTATCTTTTAAGTTATAATGATGaaccaaaaaacaaaat
tttgaataatttgataaTTAATAAAAGTTGTTAATTAAAATAAGTTGTTA
ATTAAAATAAGTcgttattgaaaaataaaaacagttaaTAGAAATAAAGG
CACGTTGAACCTGAACCCGAGACCTGTAAATTTTTTCGTGAAATTTATAA
AGTCAACAATTTAAAATAACAGTGAGTTAAAAGCCTCTAATAGTAATTTG
ATCctcacaaaaataaatttctataTTCAAAGCAGTGATGGATTTCTGGT
GACATGGGGCATCTGAGTAAGATTTTAAATGGAAATGTAAATGTTTGaag
taaaactttttaaaaactgtttaaaattaTCATAATAAAAGTATAGAAAC
TAGAAAATAACTAGAAAATGTTAATACTAGCAGTGGGCTATAGAGacctt
tcttttcaaaattaagtttgcataattttttttggttggttgggacccaa
ataacataaatctaagatatttttggatatttccaaatgcccaaaatggg
ccattttcgggccattttgcttggaaaaaaaatctaaaacctgctgtgtt
ggtgctacaacCATCAAATTAGGCTCAAAATGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033065XLOC_033065Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052247-exon-scaffold_213-1491911889:596910..597544TCONS_00052247-exon-scaffold_213-1491911889:596910..597544Clytia hemisphaericaexon
TCONS_00052247-exon-scaffold_213-1510915933:596910..597544TCONS_00052247-exon-scaffold_213-1510915933:596910..597544Clytia hemisphaericaexon
TCONS_00052247-exon-scaffold_213-1575043694:596910..597544TCONS_00052247-exon-scaffold_213-1575043694:596910..597544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:596910..597544 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.106286	0	2.09474	0.957745	1.16185	0.923191	0.287872	0.711479	1.04111	0.625518	0.764241	0.458929	0.161775	0.123323	0.206915	0.331301	0.635456	0.120128	0.180904	0.172257	0.143947	0	0.77437	1.52016	0	0	0	0.345764
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052247 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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