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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052282 ID=TCONS_00052282|Name=TCONS_00052282|organism=Clytia hemisphaerica|type=transcript|length=1306bp
AGCAGCACAAGTCCCTACAGAAGCTGGACCAGGAGAAGAAATTTATGAAG
AATTATAGATGATTTGTGAAATTTCATTGGCCGTTGACGACAAATACTAT
GATGTGATTGGTTAAGAGTAAAGCTTGTATGTATTTCCATTGGCTTCTAA
CAAGAGATAGCATAAAATGATTGGTTGAGATATTGGTATCATTTTGTATG
TTCACTGGAAACTGACAACAAATTCTAAGATGTGATTGGTAAATCGagta
atgacattttgcatttCTACTGGCATCGACAACAAAAGCTAATGGTAAGT
TATGGATCTAAGGGTTATATTTTTGATGGAGAGGGTTTCTTTTTATCCCT
ATACTCCTTATAAGGAAACGAGGACTCTCCGTCATGGATTTTGAAGCTCT
CCACCTCAGATCCGGTTGGTTTAGAGGATCATCAAGTTGTATTTTGGTTG
GAAGCTGATATGATAGgaaaatatgcgaaaatattacaaaatttcGATCT
TATTGTTGGAGAGACCTATCTGAAACTGAAACGCGTTCTACGTTGTGATT
GCTCAATATAACCAAAGTTCTCCCTGACTGTTGTTTCAAATGATGATCAT
TGTTATAGAAATCAAGCCGAATGTTCATTGACCAGTGAAATCCATCAAAA
TCTTAAAGGCCTACGTTACACCTTCTAATATATTTACAGCTTCTAGAAAT
TACATTATTGTCTACCGTGActatcacagctcgaataagTTGAGCTCTGG
TACCCAGGGCACTTTTTGTCATCTTATCCAAAAGAAAATACGTTTACGCC
AATATTTTTTCTACGGAGTCTTTTTAttagtacagttgacgctctctaac
tcgacgttctactattcgatacacgCTCCATTAtccgatgaaatttaaag
tcgccgtcaacaagaagctctcataaacgacactcccttattcgatgaaa
atccaattccccttgaagatcgaattagagagcgtcaactgtacatgttt
tttataagcatctaAATATTCGAAACCAGGTTtggagatgcttaggtcga
ggGCTTGACAAGGCTGAAAGATGCTTATAAGGATGCTTTTATCCAaagca
aaaattctaaaaaatccgtaaaatcacagccaaaatcagccaaaatcatt
tttcgtaggctcaggGTAATGCTCAACACATGCTTAAATTTTTGTCATAT
CTGAgcttagtatatgtaatcacatgataacgagtgcaattcgagaataa
ttgcacgagtgatttttttgttattaattttccgagtccgaaaggacgag
gaaaat Run BLAST on NCBI transcript from alignment at scaffold_213:1063575..1067930+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052282 ID=TCONS_00052282|Name=TCONS_00052282|organism=Clytia hemisphaerica|type=transcript|length=4356bp|location=Sequence derived from alignment at scaffold_213:1063575..1067930+ (Clytia hemisphaerica)
AGCAGCACAAGTCCCTACAGGTAATTATTCATTTTCATGTGTTTGAATCg
taattttttgaagaaaatgttaaagTCTCTAGTCTAAGATATCATTTCTA
TGGTGGCCTAGGAGTGCAATAGtgacaaatataaaaaaaacatttgaaaa
tgaatttaaaaccaaaattaaattgaaattaatatcaaagtcaaaatcaa
aatgaaaatagaattgaaatcaaaattaaaattataattaaatcaaatta
aaaatgaaatcaaaatgaaataaaattaaaatcaaaatcaaaatcaaagt
caaaatcagagtcaaaatcaaaatgaaattaaaatcaaagtcaaagtcAA
AGTCAAAGTCAAAGTCAAAGTCAAAGTCAAAGTCAAAGTCAAAGTCAGAT
TTTTTTGCGTACGTGGCCGAGGAGTGCAATAAGGACCAAATGTAACCTCT
CATGGCCGAGGAGTGCAATAGTCAAAATATTCCaaatcaaattgattttt
ttgcttaCGTGGCCGAGGAGTgcaataaggacaaaaatacaaCCCCTCAT
GGCCTAGGAGTGCAATAGTGCATGGAGGTTCATGCCAGCAGGACTTGGTG
GTTATGGTGAAtctgcagcaggagttggtggttctggttaatctgcatca
ggagttggtagTTCTGGTGAATCTGCAGCAGGacttggtggttttggtga
atctgcagcaggagttggtggttctggtgaatctgcagcaggagttggtg
gttctggtgaatctgcaGCAGCACTTGGTGGTACTGGTGAATCTACAGCA
TGAGTTGGTAGTTCTGGTGAATCTGCAGCAGGacttggtggttctggtga
atctacagcaggagttggtggtacTGGTGAATCTACAGCATGAGTTGGTA
GTTCTGGTGAATCTGCAGCAGGacttggtggttctggtgaatctgcaGCA
GCACTTAGTGGTACTGGTGAATCTACAGCATGAGTTGGTAGTTCTGGTGA
AtctgcagcaggagttggtggttctggtgaatctgcaGTAGGAGTTGGCG
GTTCTGGTTAATCTGCAGCAGCacttggtggttctggtgaatctgcagca
ggagttggtggttctggtgaatctgcaACAGGccttggtggttctggtga
atctgcaACAGGccttggtggttctggtgattctgcagctggagttggtg
gttctggtgattcTGCAGTAGGAGTTGGTGGTTATGGTGATTCTGCAACA
GGACAAATATTCtccaatattttttgcaattttttttttaattttgtagt
aaaaaaaaatttaaaacaattttgaaaataaaaaaaaattaaaaaaaata
tttgaaaaaaaaattggaaaatatttGTCCTGTTGCAGAATCACCATATT
GCTATCACCACCAATTGCTGCTGCAGAATCACCAGAACGATCAACTTGTG
CTGCGGAATCACCAGAAcgaccaactcctgctgcagaTTCACCAGAACGA
CCAGCTCCTGCtgcagattcaccagaaccaccaactcctgatgcagaaTC
ACCAGAACCACCGAGGCCTGCTGCAGATTCACCAgtaccaccaactcctg
ctgcagaTTAACCAGAACCGCCAACTCCTGCTGCAGATTCACCATAACTA
CCAAGTCATGCTGCAGATtaaccagaaccaccaactcctgctgcagaTTC
ACCATAACTACCAAGTCCTGCTGGCATGCTCACTTTTTCATTTACAACCT
CCATGCACTATTGCACTCCTAGGCCATGAGGGGttgtatttttgtcctta
ttgcACTCCTCGGCCACGTACgcaaaaaaatctgattttgattttgattt
tgattttgattttgattttgattttgattttgattttgattttgattttg
atttttaatttgatttaattataatttgaatttagatttcaattttattt
tcattttgattttgactttgatatttcaatttaattttggttttaaattc
attttcaaatttttttttatatttttcactaTTGCACTCCTAGGCCACCA
TACATTTCTCTGCTTTCAAAATCCTATCTCGAAAATGGTGTTTGGGACTT
TTTTGCtttccaaatttaaaattttgtgtaTTGGACTATTCCGgaaaaaa
atttgtaccccctatgttgaggagatcttttttttaaaaggtgaCCCTct
ggatttttccaatttttcaggacccccttggatttctttcttccatttct
ttggaccaccctggattttcgacctcgttatactgaccaccctggatttt
atcattcaaaaaactagaccaccctggactttttattttccaaaccaCCC
TGGACGTCGCACCTCCTCGACATAGGGGTTAcaaactatttctggaataa
ccCATTACCCTTTTTCTTGTAGTGGAGAATGATCCTATCTACAAAAGCAA
AGGTCTATACAGTTTACAAAGTCTGAGTGTACCAGGTCTATGTCAAAGTG
TATTAGACACCTTTGCCTTGATTTCAGCAATTTCGCGGTTTTGTGTTTGG
AATTTTGACTGTTACAAATAGAGCTTTGTACATTTGCTCAGCATTCTTGC
TCAATTTCTGAAAGACTTCCTATGACCatccctgatattataccatatta
aTGCTTATGGGATCAGGGGGCAGCGTTTgtcataattaaaaaaatcttta
cgtTTGCGAGATAGTGAAAACTATGGATAATTTCACTGGCTCGAATcttt
gtaaaaaagaaaaagagtgttCGATCTGGTTAAAGTTACACCCTTTCATC
GGGTGATATCCGCCCATGTGAATGACCTGGtgaaaaaaattgctaaaaac
gggTACTTTCAAGCATCGATAAGATTATCAAAGTAAACCCAGTTAAAATG
TATTGAAATTCTCTAGCCCGGGCAAAACGGAATTTTGTTGCCTCACCCCG
GTCAAAAATTGCATTAATAAAGTTAACCCGGCCAATCGATGGGTACACTG
AGACAAGGGTGTAAAGTTTAATGTGAGATAGGCAAATAATAAATCCTTGA
ATCGCATACTTTTTTTGTAGAAGCTGGACCAGGAGAAGAAATTTATGAAG
AATTATAGATGATTTGTGAAATTTCATTGGCCGTTGACGACAAATACTAT
GATGTGATTGGTTAAGAGTAAAGCTTGTATGTATTTCCATTGGCTTCTAA
CAAGAGATAGCATAAAATGATTGGTTGAGATATTGGTATCATTTTGTATG
TTCACTGGAAACTGACAACAAATTCTAAGATGTGATTGGTAAATCGagta
atgacattttgcatttCTACTGGCATCGACAACAAAAGCTAATGGTAAGT
TATGGATCTAAGGGTTATATTTTTGATGGAGAGGGTTTCTTTTTATCCCT
ATACTCCTTATAAGGAAACGAGGACTCTCCGTCATGGATTTTGAAGCTCT
CCACCTCAGATCCGGTTGGTTTAGAGGATCATCAAGTTGTATTTTGGTTG
GAAGCTGATATGATAGgaaaatatgcgaaaatattacaaaatttcGATCT
TATTGTTGGAGAGACCTATCTGAAACTGAAACGCGTTCTACGTTGTGATT
GCTCAATATAACCAAAGTTCTCCCTGACTGTTGTTTCAAATGATGATCAT
TGTTATAGAAATCAAGCCGAATGTTCATTGACCAGTGAAATCCATCAAAA
TCTTAAAGGCCTACGTTACACCTTCTAATATATTTACAGCTTCTAGAAAT
TACATTATTGTCTACCGTGActatcacagctcgaataagTTGAGCTCTGG
TACCCAGGGCACTTTTTGTCATCTTATCCAAAAGAAAATACGTTTACGCC
AATATTTTTTCTACGGAGTCTTTTTAttagtacagttgacgctctctaac
tcgacgttctactattcgatacacgCTCCATTAtccgatgaaatttaaag
tcgccgtcaacaagaagctctcataaacgacactcccttattcgatgaaa
atccaattccccttgaagatcgaattagagagcgtcaactgtacatgttt
tttataagcatctaAATATTCGAAACCAGGTTtggagatgcttaggtcga
ggGCTTGACAAGGCTGAAAGATGCTTATAAGGATGCTTTTATCCAaagca
aaaattctaaaaaatccgtaaaatcacagccaaaatcagccaaaatcatt
tttcgtaggctcaggGTAATGCTCAACACATGCTTAAATTTTTGTCATAT
CTGAgcttagtatatgtaatcacatgataacgagtgcaattcgagaataa
ttgcacgagtgatttttttgttattaattttccgagtccgaaaggacgag
gaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052282-exon-scaffold_213-1491911889:1063575..1063594 | TCONS_00052282-exon-scaffold_213-1491911889:1063575..1063594 | Clytia hemisphaerica | exon |
| TCONS_00052282-exon-scaffold_213-1510915933:1063575..1063594 | TCONS_00052282-exon-scaffold_213-1510915933:1063575..1063594 | Clytia hemisphaerica | exon |
| TCONS_00052282-exon-scaffold_213-1575043694:1063575..1063594 | TCONS_00052282-exon-scaffold_213-1575043694:1063575..1063594 | Clytia hemisphaerica | exon |
| TCONS_00052282-exon-scaffold_213-1491911889:1066645..1067930 | TCONS_00052282-exon-scaffold_213-1491911889:1066645..1067930 | Clytia hemisphaerica | exon |
| TCONS_00052282-exon-scaffold_213-1510915933:1066645..1067930 | TCONS_00052282-exon-scaffold_213-1510915933:1066645..1067930 | Clytia hemisphaerica | exon |
| TCONS_00052282-exon-scaffold_213-1575043694:1066645..1067930 | TCONS_00052282-exon-scaffold_213-1575043694:1066645..1067930 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:1063575..1067930 + |
Blast
The following BLAST results are available for this feature:
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