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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052284 ID=TCONS_00052284|Name=TCONS_00052284|organism=Clytia hemisphaerica|type=transcript|length=2760bpRun BLAST on NCBI transcript from alignment at scaffold_213:1088569..1123984+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052284 ID=TCONS_00052284|Name=TCONS_00052284|organism=Clytia hemisphaerica|type=transcript|length=35416bp|location=Sequence derived from alignment at scaffold_213:1088569..1123984+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00052284 vs. Swiss-Prot (Human)
Match: TRAF5 (TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 1.726e-22 Identity = 76/269 (28.25%), Postives = 127/269 (47.21%), Query Frame = 2
Query: 179 NFKGGYDYDLVDEEIKELNCFVCFLLIRNAVELGCGHSLCMLCLDSWEKRVNESGQAFECPSCKENIDRKNVKPNQTIDRIITSSIRVKCPQNPHGCQWINVISNVQDHLNKSCVYIIIPCTNVGCEEIVLKKDVDEH-SRICGYRMTLCTDCHIEICFANIDSHEVE-CVKAIVQCPNNPCLEKMTRETANHHVTKECVYRPIECPFAEAGCRYPVNRTNYEQHQREYMEMHLALVMKELRAVKEDSRQQVTQLRNELDATKNEIASL 979
+F+ +Y V+ + C C ++ N + GCGH C C+ S + E CP KE I + V + R + ++ V C P GC ++ QDHL + C++ + C+N C E VL+KD+ EH S C +R C C ++ N+ +HE C + V CPNN C + + + + H+ C +CPF GC R N +QH+ + H+ LV+++ ++E Q++ L L+ +++I L
Sbjct: 26 DFEPSIEYQFVERLEERYKCAFCHSVLHNPHQTGCGHRFCQHCILS----LRELNTVPICPVDKEVIKSQEVFKDNCCKREVL-NLYVYCSNAP-GCNAKVILGRYQDHL-QQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHEENLCPEYPVFCPNN-CAKIILKTEVDEHLAV-CPEAEQDCPFKHYGCAVTDKRRNLQQHEHSALREHMRLVLEKNVQLEE----QISDLHKSLEQKESKIQQL 281 The following BLAST results are available for this feature:
BLAST of TCONS_00052284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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