TCONS_00052303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052303
Unique NameTCONS_00052303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052303 ID=TCONS_00052303|Name=TCONS_00052303|organism=Clytia hemisphaerica|type=transcript|length=4299bp
TTGAAGTAGGGAATAAAATTACTGAGGAAAAAATTTAATCACAAAATACT
GCAGTGCATTAAAACTGTAAAGATCATGGTATGTTCAGTTGAAAATACGA
CTCAGGATTTAAACCATCTAGATTTCGCAAGTCATCACAACGCATGCGTC
AAATCGTACAGTGATGGTTACAACAACGATAACACACAGGCTAAATTCCT
ATCAGAGGCTGTTCTAACACAAAACATTGAAGACGATACACATATACCAC
CAGACTCTTTTAAAGATGAACTTTCAAGTTTGAACAGTTTTCGAGATAGC
CCGTCAGTGCAGAGTAATTATTTGCAGATAAAACGCGAGCCTTTAAGCCG
TACTCGATCTGACGGTATATTaagtttaaagaaaaaatggacTGATAGTT
TACTGGAGGACCGGAAAACTTCATTGAATGATATTACACTCGAGAATATA
CATTTCTCTGACCGCATGCGTAAAAGGAGAGCTGGCCTCTCTTCAACGCT
TTCGTTATCTTCAAGTGTCAGGAGGTCTCGGTCGAGTTTACGTGGACCAA
TTGAAAGACAGGATTCATTGGTATCGACCAATCAGAACATGGAATTAGAA
TTACAATCACGATGTGAATCACCGGTTCTTAatgatgatGAGACGTTATC
GACCTGTGAAAACGCATCCGGACGTCCGTTGGGGTCGCAAAGCATTCGCG
GTAATGGTGCAAACGAGAAAAGTGCAGACCGTATTGTCATCAATGTCGGG
GGTACCCGACATGAAACCTTCCGGTCTACACTTCGGGTATACCCGGACAC
TCGGTTAGGTTGGTTATCGATTGACGGGTCTGATGTCTCTGATGCTTTCG
ATCCTGTTCTGAACGAATATTTTTTCGACCGACATCCGACTGCTTTTAAT
CAAATCATGAATTTCTACAGAACAGGAAAACTACACACGCCAGCTGATAT
TTGTGGTCCATTATTCGAAGAAGAACTCAATTTCTGGGGTTTAGATGAAA
AAGCTATGGAGCCATGTTGTTGGCCTAAATACACAGAACATCGCGATGcc
caagaaaatttgaaagtctTTGATAGCCCGTTGTTGAATAATCAGCATGA
TGATGATGAGATAGAACAGCCTGCTATCAGCGTTTCACGTATCCCGAACT
ACAAAGAACCCGAAGACCAAGGTTTCAAAAGTcgttttttgaaagtcttt
aggcCATCGTACTTCAATTCCATACGATGGCTGTCGAAGAAGAAATTAAT
TTGGGCTGTTATGGAAGGTCACTCAGAACGAAGACCAATGCTTTCTAAGg
gTGTTGGTTTCATTTCCCTCATGTTCATCGTATTATCGGTTTTATCGTTA
TTTTTTCACTCGATGCTACTCGTTATCAGTGATAAAGCCGAATCAAATCA
CGAACTATTCACTTACTTATTATTAGCACTCGATTACTTAACGTTTGCTT
GGATGTCAATCGAGTTAATAATTCGATTCGTATCGAGTCCTAATCGAATA
CAGTTTCTAATAAGTTTCTATACTATCGTTGATCTATTGACGTTAATTAC
ATATGCGTTACAATTCAACCACGGTATGGACTACCACAGGACTAAAGATG
GAGTAATCGATTCAAATTCGATCACAACCGattataaaaacattgaaatg
ttCTCAATTGTacgattagttcgattggttcgattttTCCGATTATCAGT
TGGACTACAGATTTTTAAGCATACCATTATAGCGAGTTCCAGGGAactat
tgttgttggttttgttGCTATTGTTACCTGTGGCTTTGTTTGCAACTATT
GTTTATTTCTTCGAAAGAGAGaCCAACACTGGTAAATTTCGCACAATTCC
TGAATCCATATGGTGGGCTGTAATCACAATCACTACAGTCGGTTATGGAG
ATATGTCACCTGAAACGACATGGGGCAAAATATTTGGAATTATTTGTGCT
GTGTTCAGTGTATTCATTCTTGCTCTACCTGTATCGATTATCGGTACCAA
CTTTACACTTTTCTACAACTACGCACAAGCAAGAATGAAGTTACCTAAAC
GCCCTAAACTCGCACTTGTTGGAGCAGCAAACGCCTTGAGGGCAGATACG
AGTCAACATTCATTAAGTCCAGAACCTGGAGAGAGTGAGGCGGAGGGCGG
AGATACGAATTCACAAGATGGCGAAGAGGCGGCGCCGAAAATTGATTTAC
CAAAAATTAATTTAGGTTCAGATCCGGATTTCAACGCAAACATTACAAGC
AAAAGGTTCCGACGCGAGCGTTTATCACTATTCGCATCCGGTCCAACCCG
TCAATCGACACGACGCAGTAAAAGTGTCGGCAACAGTGTCGCCAGCAAAA
TTCGACAACGGCAAAGAAACGGAACGTCGGCGTCGCAGAAAAGTAAAGGT
AGTACGCCGTCAAGTGAGGNGGAGATACGAATTCACAAGATGGCGAAGAG
GCGGCGCCGAAAATTGATTTACCAAAAATTAATTTAGGTTCAGATCCGGA
TTTCAACGCAAACATTACAAGCAAAAGGTTCCGACGCGAGCGTTTATCAC
TATTCGCATCCGGTCCAACCCGTCAATCGACACGACGCAGTAAAAGTGTC
GGCAACAGTGTCGCCAGCAAAATTCGACAACGGCAAAGAAACGGAACGTC
GGCGTCACAGAAAAGTAAAGGTAGTACGCCGTCAAGTGAGGACGAAGTGT
CGGAAgctgaaagtgaaaaaatcgaaGTTTTTAAACCAGTCAAACGTGAC
AATGATAATAGTGTAACGAATTCGTTTGATAACGAAGCTTTCGAACATAA
CAATGAAAAACAAGTCGAAGTGGCCACGGAAGTGACTGAAAATGGTCACA
ctaaccaaaataaaaagataataaaCAATACAGAAAATGACAAAGAAACT
AAGGATCTGAATTCGAAATTCCAAAAACCATTTGATGATGAAAAACGTGA
ACGTTTACCGCCAATTAACGGTGGTCCGGTACCCATTATAGAAACCATTC
TCACCAATACAGATAACACAGACCAGAATCTTACGACTGGACCCATTGTG
AACGGCCACGGTCCGCCGATATTAAAAGAGCCGGTCATGAATAATCGAaa
ctcatttaaaaaaattagctCACCACCAGTGTTAAGAAAAATATGCGGTA
ATGGACTTGAACCGGTTAGGAAAAGTAACGGAATGGCTGTTCCGGTTGAG
GAAGTTGAATCGCCGGAATTATTTCGGAGAAAGTATAGTAATAACCATTT
GTATGTACCAACGGATGGATGTTGAGGAGATTTGATGTGGATACCAATGA
GATATAACTGAAAGCTAGAGTCAAATGAATCTCTgatgtaggatttgaag
ccacttatttcctatactcttatgtgcttaattgtaggaggtagaataag
caggggggttggtactctgggagaaaatccataaaatgcgGGGAGGGTCA
ATATTAAGTGATTTTGGGGTggtttcccaaaaaaaaaaaccctaggaaaa
tgaaggttttgacACTTTTTCAGTATTTTCAGGAAAGTTTCATAATTGGG
GGGTCATTGTAAAATGCTTTGTGGgtgattttttcagaaaaacttgcaAA
ATGACCCGCCCCCTACAGTTAAGCACAGAAGGGTACATAAGTTGGGTCCT
TGTTTTGACAAAATATGGCGAACTGTGAGTTTTTTAAAGGGTTACACCTC
GCTGTTTTCCCCCGATCAATTTGTTATTTATACTCCCTTGGACCCTTATA
ATAtcatatttaattttatttgcGTCTATGAACAATCTCTTCAGTGCTTC
TGAACAATTTATATGCCAGGGAAGGTTAGTTATTTCACTGCCACTTTCTA
ATGTACCATAGAGTGGTTAAACTTTCTTATTCCCAGCTAAACTTTCCTTC
AACTTGCTAATTTGTATAGGTTGTCTACGCATTTGTACTtagcaaaatat
tatttttgccGGTATGACCGAGAAAAAAAACAGCCGAAAGATCCTATAGA
AATGCACCACGAATTTctgccagaaaatgaaaaaatttagcCAATTTATA
TATTATTATGTTAAGATTTCATTATTATGTTATTATACACAAAACACGAC
GAATTTATTTGTAAATAACTCCAATTTCATCAACCTGCTATTATTACCCT
ATTGAAAAgaccaaaaagaaatattacaaaaaattatcaatttgaaTGTT
TGTGTAAATTCTGtctcaatacacctttttgaccgtagccgccaattgcc
gtgcgggcatttttttgttcgttttaccaccctaaaaccattCCAGTcg
Run BLAST on NCBI

transcript from alignment at scaffold_213:1196125..1206541+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052303 ID=TCONS_00052303|Name=TCONS_00052303|organism=Clytia hemisphaerica|type=transcript|length=10417bp|location=Sequence derived from alignment at scaffold_213:1196125..1206541+ (Clytia hemisphaerica)
TTGAAGTAGGGAATAAAATTACTGAGGAAAAAATTTAATCACAAAATACT
GCAGTGCATTAAAACTGTAAAGATCATGGTATGTTCAGTTGAAAATACGA
CTCAGGATTTAAACCATCTAGATTTCGCAAGTCATCACAACGCATGCGTC
AAATCGTACAGTGATGGTTACAACAACGATAACACACAGGCTAAATTCCT
ATCAGAGGCTGTTCTAACACAAAACATTGAAGACGATACACATATACCAC
CAGACTCTTTTAAAGATGAACTTTCAAGTTTGAACAGTTTTCGAGATAGC
CCGTCAGTGCAGAGTAATTATTTGCAGATAAAACGCGAGCCTTTAAGCCG
TACTCGATCTGACGGTATATTaagtttaaagaaaaaatggacTGATAGTT
TACTGGAGGACCGGAAAACTTCATTGAATGATATTACACTCGAGAATATA
CATTTCTCTGACCGCATGCGTAAAAGGAGAGCTGGCCTCTCTTCAACGCT
TTCGTTATCTTCAAGTGTCAGGAGGTCTCGGTCGAGTTTACGTGGACCAA
TTGAAAGACAGGATTCATTGGTATCGACCAATCAGAACATGGAATTAGAA
TTACAATCACGATGTGAATCACCGGTTCTTAatgatgatgtaatgttttg
ttctttgttTCCTACCATGTTCatacgttactgttccgtttcgttccggt
atgattttcgtcccggaacgtttcggagtaagaaaacggagcagtttcgt
tccgatgaaaaaagtataacgaaaccgtttcgatctgttttgcgaatttt
gacgttcacacttgtttcggaaccgtttcgttttggAACGGAACTGTAAC
GTCTGAATCTATTTTAGTTTTACCACGACACAACTGTAtggggactgggt
tcgagtttttAACATCATGATAAACGCGTAAACTCGATACCACTCATTGG
ATCCAAAGATACTTTTTGAATGATATAGTTCTAATTGTGTGTGGGGGCGG
GAAGGGCTTCCGAGGGTATACCAGAATACAGGTAATTCTTTCATGAAATA
TTGGCGTACCGGTTCTCAAATATCGGTCAATAATTGCTTATAATTTACAC
GAAAATTACTGCGCTGTCAAAAAGacagtacatgttttttttttataagc
ataacgtttataagcatacgcaggctcagtttttggtacctaaacaatgg
ctctattgtttgagaacaatagaatgctaagcataatgcgagcctgatgt
aggggcagacacttgcttataaaaaaaaaacatgtataaagCTGCAATAA
TTAACGACGTTTCACATGCATGTTACATTTTGGGTCAAATTCTTTATCAA
AGAAGGCTTATTCCGTTGAAATGACTGGTTGACttatcaactttcttttc
tttctctaGGAGACGTTATCGACCTGTGAAAACGCATCCGGACGTCCGTT
GGGGTCGCAAAGCATTCGCGGTAATGGTGCAAACGAGAAAAGTGCAGACC
GTATTGTCATCAATGTCGGGGGTACCCGACATGAAACCTTCCGGTCTACA
CTTCGGGTATACCCGGACACTCGGTTAGGTTGGTTATCGATTGACGGGTC
TGATGTCTCTGATGCTTTCGATCCTGTTCTGAACGAATATTTTTTCGACC
GACATCCGACTGCTTTTAATCAAATCATGAATTTCTACAGAACAGGTTTG
TTAAACAatgcaattttaaattttgtgttaGGCGTGACCAGTTTGATTAG
CTGTTTTACGGACCCGACCGACCTTTaaattccaaaaaaccaaattaaaa
aaaattatttagttactacatttttattttcatttctttataaactgcca
aattttcaaaattgtggtagtttttccaaggtttctagaattttatgttc
aactTTTCAATCTATCCATAAATTCAagctttttgtgtttttctttttct
cgcttttttttcaagatgcagtagtttttgctgcttttttaggaaatttt
atcggtgaaattctacttttatttttactttttcaccGACCGACACTCTT
TTTTGGGTAGTTGGGCACGTAaatcaacaaattaaattggcctcgcctta
tAAGAAATTAATTTCAAATGTTGGAACTTATTataattgttatttttcaa
GCTTGTGGGGAATAAGGGTCAACTTTCTCAGTGGCAAATGCCCGCTAACA
TTTTGTTGAAACGAAGTACCGGATGTGTCAAAAAAACGCCCCTGAcatgt
ttgattttattgagAGCTTGTTATGTTATGCCAGggtaaaaaagttcttt
ttccACTTATTTTGACCATGGGTTTGTTCTCTACGCCCTCTACCACCCCT
CTTAGCGTCAATATATACCTCGAttgtattttttctaaaaagtatATACT
CTAACGGGAAAAAGGTTGATTGGACGAATTTTATCTAGCACATAACCTTT
GATTTCAGGAAAACTACACACGCCAGCTGATATTTGTGGTCCATTATTCG
AAGAAGAACTCAATTTCTGGGGTTTAGATGAAAAAGCTATGGAGCCATGT
TGTTGGCCTAAATACACAGAACATCGCGATGcccaagaaaatttgaaagt
ctTTGATAGCCCGTTGTTGAATAATCAGCATGATGATGATGAGATAGAAC
AGCCTGCTATCAGGTAATCTTTATCCTAACACtgaaatcttaaaatctct
ttctATAGCAATACGTTCTtctctttttgagaaaaatattaatTAATATG
CGAATGTTGTTTGGAGTAATTATTTCATTCAAacgaaaaatcatgaaaat
attttctcctGATAATGCCTTCCATGAAATTAAGTCCCCGATTAGGTCAA
CCGCGAAacttaatcccattaaagtaaaacATAACgcggtgttttttaca
cttttggcaaaaacgtgacattaaattttctaaaaacggttttttttaat
aaaattaattttaacgagcattttgggatgaaatcttccaaaaaggtgTA
ACACACGAGCTTAgaatttttggttttggtcCCAGGAGCGAAGAAGGATc
caatattcaaaatattagattttaagaattttggaatTATGAGAGTTAAG
TGGCTCTTGGATTGATTCTGATGGTCTGaacaaggatttattatacactg
gatatacaagtaacagatttttgccgatttctcgtgtactagctatgtcc
gcagtaatgatagtattgttcactctccttccctcattaaatgatttttc
gaagcatttttattgcatttcttatcgaaaatcactcatccaattcccta
aagagacttaaaactttcctgtgagagtcagattcttccacttaattgct
aattttAAGTCGTTATGAcatttcaagctgtgagaaagatgcaaaaggcg
tgttatgtataagaaatttaatgttgacaccggaaattttcaaacttcaa
cctcaaaaaaaccacttTGCCACCACgcgcctccaaaggattttcatacc
acagtggagccaaaacactcaagtcttatgtatgttaatttcagctcttc
tggggacagtcttggaaagatatttccaattgaaaatctcgtgtcactat
aagcattttggctggatttcttgtctaatgatgtttttctcacattacat
TTCACAAANCTGAACTTGTTACATGATCTCTATATTTTATGAAACAATGA
TGAAGAGCACTTTTGGATCCGAAATTCCATCCGAAAAACATCTCTGAACT
TGAACAATTAGAACaacatttcatcgttaaaatggACTGATTTgggatta
aaaatttcattttaaaccTACCCCAACCCCAACTCGCAAAATGGAATTAT
TAATCCTTCGGGGCTCTATCTGAGCTTATTTTAGCTCATTAACGTAACGA
CTTCATCATGCATAACGTAAAAAATCAGTTTAGAGCCTTGTAGGATATTT
CATTCGACGCTGATTTCGGATAAGGCAAAGTATGTTACTTTCAATGAAGG
ATTTGATCATCCTTAGATGCTCTATTCTAgtggaaaatcttattttcgtT
TCGTGTTCTTAAGAGCCTAAACGTTCCAAATGTATTTAATTTAAAACTTG
TTTAAAAAAACcttcacgtttttgccaaaagtgtaaaaacacCGACATAA
CTCGAATCTTTTTCTAGTTCGAAAAAGAGTGTTGTACCTATGAATAGACg
ggtttcaatgttttgattttgtacggGCGGACGGGTGTGAGCGGGCGATC
GCGCTTGATTATTGGAGGCAAAAAGACTTACGATTTATATGGAGGCAAGT
gaatatcaatcaaatttttgataacTACCAAAAatacctacctacctacc
tacctacctacctacctaccgACCGAAATTTATGAATGATAAGCATATAT
ATCTCTGAaaaaacatactaaaatttattttcaaaagtcctACCAGATAC
TtcgtcaaaacaaaaaatctgctTGCCTTCAGCTAATGTTATGGTCATTT
TGCCTCCAAAAAATCGGGCGGTAAGTCACGTGAGTAAACAAATGACGTAT
CACGAAAGCCGTCTATAGGCAACTGTAATTTCATATGTTTACTTTCTTCT
TAGCGTTTCACGTATCCCGAACTACAAAGAACCCGAAGACCAAGGTTTCA
AAAGTcgttttttgaaagtctttaggcCATCGTACTTCAATTCCATACGA
TGGCTGTCGAAGAAGAAATTAATTTGGGCTGTTATGGAAGGTCACTCAGA
ACGAAGACCAATGCTTTCTAAGGTACAATTACGATTAACTTCAAACTAGA
GTCTAGTCCcttagtttcattttttatggctCTGATAGCGCGCACTAATG
TATCACGTTCACCAGTGAAATGAAATAAGTGGTGTAAGTGACTCTGGGTA
CGCGATTGGATTGGCTTTTCTTTCCCTTTAGTCGACTTTTCACTGACTGC
TCAACAGAGAATCAATTACTATACGATTAGGTTGATTTTCCTGAAAGCGA
AAATATAccaaaaatatctcaaaccatctgattattccTATTTTGGAGAA
ATAAATCCGTGACGCACTTCGAACAAATTACTTACACTTTatacattttt
cttttccagggTGTTGGTTTCATTTCCCTCATGTTCATCGTATTATCGGT
TTTATCGTTATTTTTTCACTCGATGCTACTCGTTATCAGTGATAAAGCCG
AATCAAATCACGAACTATTCACTTACTTATTATTAGCACTCGATTACTTA
ACGTTTGCTTGGATGTCAATCGAGTTAATAATTCGATTCGTATCGAGTCC
TAATCGAATACAGTTTCTAATAAGTTTCTATACTATCGTTGATCTATTGA
CGTTAATTACATATGCGTTACAATTCAACCACGGTATGGACTACCACAGG
ACTAAAGATGGAGTAATCGATTCAAATTCGATCACAACCGattataaaaa
cattgaaatgttCTCAATTGTacgattagttcgattggttcgattttTCC
GATTATCAGTTGGACTACAGATTTTTAAGCATACCATTATAGCGAGTTCC
AGGGAactattgttgttggttttgttGCTATTGTTACCTGTGGCTTTGTT
TGCAACTATTGTTTATTTCTTCGAAAGAGAGGTAAGTAGTCACATTCACA
GATATCACATTTCTTTGAACACTACAATTTGTGACTAAATATTGTGGCAA
GAATTCCCTTCCCCCTTAGTACCAATGTTGAAAGGCTGTCACCATGCTTA
GAAAAACCTCACATCAACACTGATATTAGGGGgagagatttttcaagaaa
ttgccacatattttgtcactgattgtagatagGCTTACTGCTCACAGATT
TCCCGTAGAAGTGTGGTGTCCAGTTTAGAATTCAACTACTCCAGGATGTT
GTTTTCTGATTCAACTGTGATTTTTGAACCCTCGAATTTTCTATATATCG
AGCCTCCTAGTACAAATGGATACTTTTCAATTAGCTGATTATTAacctac
tcttaggtgccaaataaacgcggGGGAGGGGGGCTTGTTAATTTTTCGAA
CATTTTCTAACCCCCCGGACCTTATTAGGACCCCCCCCCGTTTATTAATT
TTTAAAAATATTTTCAGCTATCAAAGAGAAGGCCCCTTATTTGGTCTAAA
TAACCTGATTTTAGCCTATATTTACCTTATTTTTTGGTTTTCAGAAATTT
CCAATCCCCTCCCCGGCAATTAGGTCCACCCCGCTTATTAAAATCTCAAA
AAATTTCCCCCCCCCCCCCGTTTATTCGACCCCCCCCcttgtttatttgg
cacctaagagtatgtcCCTACAATAAGAACAGCACCATTTTCAGGGCGAC
ACTAGCCTAGATGCCCCCCTAGATCACAGACCTTTAAATAACTGCAGGTA
TAAGGGACAAGAATCTGTTAATTGATGGCAGCAGCCTAAGACTATGTTCG
TACGTAACGGTTCTTTTTCGGTCCGAAGTGAAATGAATCCATTATATTGG
TTACAAGTGACcgtaaaacttgaatttaaccaatagaatggcttcatttc
gtttcggagcgtgtgaacatggtctaagaaGACGACGTGGAACCGTGCAG
TCTGAATAtgttttaatatcttttttttagaCCAACACTGGTAAATTTCG
CACAATTCCTGAATCCATATGGTGGGCTGTAATCACAATCACTACAGTCG
GTTATGGAGATATGTCACCTGAAACGACATGGGGCAAAATATTTGGAATT
ATTTGTGCTGTGTTCAGTGTATTCATTCTTGCTCTACCTGTATCGATTAT
CGGTGAGTTTCGTCATGTTTTGTCTATCTGAGCAAGAACGGCTTATAAAG
GTTTTTCATCTTTGTATAGCCTGCATCAACAAGATCTTTTTAAGACGCAt
gtaaaaaaacattcaaaacattcaattcatgatatacaccattACAATAC
CGGttaacattacatcacggacccaacagctgattggttgaaagtgacgt
attgactgattttacgtcaattacgaccaatcagctgttgggtccatgat
gtaatgtcgaagacattgcaatggcaTTTCATGAATATGGACGTTTCCAA
TATAGATGTTTCTTATGCTTTGTTAAGGAGTTACATATTTTCGTTCGTTA
AGGgggtaaattgtgaaaaatcggacataaaaagaaaaaaatttaatttg
gcgggaatctAATTTGGTTGATGGccgaaaaacttaattttggcgggaac
ttgatttggcggatttgattTTCGCTAAATTTGCTTTCCTTAAGGTAATT
CAACGTAATTTACGTCATTATAGAAGGAAAACGTTCGACTCTGTAGAGGC
GACCCCTAACGCAAATCGGATGTTTGCTTCTGAAACGGTGGAAAATACTT
TAAAACGTAAAAATTAAACCTTAAACTCTTTAACGAAGCATAAGAAACCt
atatatttgatattttttcctgTAATGAAATATTGCTGTTGAGTCGTCTA
TGCAGACTAGAGGGCTTTGGAATGGAAGCATCTTGACTTTTCAATTTCGG
GGCTGTTTCAGTGgtgtttgtttgttatttaaTATGAAAGAAGCAATACA
ATTCTGGTGATGAAAAATGGTATGATTATTTTAAGCATTGAATATTGATA
TTGGTGATTTGAATTGCTTGGGGACCAATTCCAATTGAATGGTTTTTGCT
TTTCCTAAAGTAAATCAGTACTTTTACCTAATATTTTCCTTTTAGGTACC
AACTTTACACTTTTCTACAACTACGCACAAGCAAGAATGAAGTTACCTAA
ACGCCCTAAACTCGCACTTGTTGGAGCAGCAAACGCCTTGAGGGCAGATA
CGAGTCAACATTCATTAAGTCCAGAACCTGGAGAGAGTGAGGCGGAGGGC
GGAGATACGAATTCACAAGATGGCGAAGAGGCGGCGCCGAAAATTGATTT
ACCAAAAATTAATTTAGGTTCAGATCCGGATTTCAACGCAAACATTACAA
GCAAAAGGTATTTacaagaactttttatttttcaaaatcttggaATTTTC
AAACCTAACCAAATTTTTACTGAACTTAACTTTGGCATTTAGTACCAGGT
TGTCTATCCCATGTAGTTTCTATATTTGGGGATTTAaagttttgactttt
atttctaGTATAAATCGAGAATTTTTATTCCCTTCCTTAGGTTCCGACGC
GAGCGTTTATCACTATTCGCATCCGGTCCAACCCGTCAATCGACACGACG
CAGTAAAAGTGTCGGCAACAGTGTCGCCAGCAAAATTCGACAACGGCAAA
GAAACGGAACGTCGGCGTCGCAGAAAAGTAAAGGTAGTACGCCGTCAAGT
GAGGNGGAGATACGAATTCACAAGATGGCGAAGAGGCGGCGCCGAAAATT
GATTTACCAAAAATTAATTTAGGTTCAGATCCGGATTTCAACGCAAACAT
TACAAGCAAAAGGTATTTacaagaactttttatttttcaaaatcttggaA
TTTTCAAACCTAACCAAATTTTTACTGAACTTTACTTTGGCATTTAGTAC
CAGGTTGTCTATCCCATGTAGTTTCTATATTTGGGGATTTAaagttttga
cttttatttctaGTATAAATCGAGAATTTTTATTCCCTTCCTTAGGTTCC
GACGCGAGCGTTTATCACTATTCGCATCCGGTCCAACCCGTCAATCGACA
CGACGCAGTAAAAGTGTCGGCAACAGTGTCGCCAGCAAAATTCGACAACG
GCAAAGAAACGGAACGTCGGCGTCACAGAAAAGTAAAGGTAGTACGCCGT
CAAGTGAGGACGAAGTGTCGGAAgctgaaagtgaaaaaatcgaaGTTTTT
AAACCAGTCAAACGTGACAATGATAATAGTGTAACGAATTCGTTTGATAA
CGAAGCTTTCGAACATAACAATGAAAAACAAGTCGAAGTGGCCACGGAAG
TGACTGAAAATGGTCACActaaccaaaataaaaagataataaaCAATACA
GAAAATGACAAAGAAACTAAGGATCTGAATTCGAAATTCCAAAAACCATT
TGATGATGAAAAACGTGAACGTTTACCGCCAATTAACGGTGGTCCGGTAC
CCATTATAGAAACCATTCTCACCAATACAGATAACACAGACCAGAATCTT
ACGACTGGACCCATTGTGAACGGCCACGGTCCGCCGATATTAAAAGAGCC
GGTCATGAATAATCGAaactcatttaaaaaaattagctCACCACCAGTGT
TAAGAAAAATATGCGGTAATGGACTTGAACCGGTTAGGAAAAGTAACGGA
ATGGCTGTTCCGGTTGAGGAAGTTGAATCGCCGGAATTATTTCGGAGAAA
GTATAGTAATAACCATTTGTATGTACCAACGGATGGATGTTGAGGAGATT
TGATGTGGATACCAATGAGATATAACTGAAAGCTAGAGTCAAATGAATCT
CTgatgtaggatttgaagccacttatttcctatactcttatgtgcttaat
tgtaggaggtagaataagcaggggggttggtactctgggagaaaatccat
aaaatgcgGGGAGGGTCAATATTAAGTGATTTTGGGGTggtttcccaaaa
aaaaaaaccctaggaaaatgaaggttttgacACTTTTTCAGTATTTTCAG
GAAAGTTTCATAATTGGGGGGTCATTGTAAAATGCTTTGTGGgtgatttt
ttcagaaaaacttgcaAAATGACCCGCCCCCTACAGTTAAGCACAGAAGG
GTACATAAGTTGGGTCCTTGTTTTGACAAAATATGGCGAACTGTGAGTTT
TTTAAAGGGTTACACCTCGCTGTTTTCCCCCGATCAATTTGTTATTTATA
CTCCCTTGGACCCTTATAATAtcatatttaattttatttgcGTCTATGAA
CAATCTCTTCAGTGCTTCTGAACAATTTATATGCCAGGGAAGGTTAGTTA
TTTCACTGCCACTTTCTAATGTACCATAGAGTGGTTAAACTTTCTTATTC
CCAGCTAAACTTTCCTTCAACTTGCTAATTTGTATAGGTTGTCTACGCAT
TTGTACTtagcaaaatattatttttgccGGTATGACCGAGAAAAAAAACA
GCCGAAAGATCCTATAGAAATGCACCACGAATTTctgccagaaaatgaaa
aaatttagcCAATTTATATATTATTATGTTAAGATTTCATTATTATGTTA
TTATACACAAAACACGACGAATTTATTTGTAAATAACTCCAATTTCATCA
ACCTGCTATTATTACCCTATTGAAAAgaccaaaaagaaatattacaaaaa
attatcaatttgaaTGTTTGTGTAAATTCTGtctcaatacacctttttga
ccgtagccgccaattgccgtgcgggcatttttttgttcgttttaccaccc
taaaaccattCCAGTcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033080XLOC_033080Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052303-exon-scaffold_213-1491911889:1196125..1196763TCONS_00052303-exon-scaffold_213-1491911889:1196125..1196763Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1510915933:1196125..1196763TCONS_00052303-exon-scaffold_213-1510915933:1196125..1196763Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1575043694:1196125..1196763TCONS_00052303-exon-scaffold_213-1575043694:1196125..1196763Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1491911889:1197534..1197819TCONS_00052303-exon-scaffold_213-1491911889:1197534..1197819Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1510915933:1197534..1197819TCONS_00052303-exon-scaffold_213-1510915933:1197534..1197819Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1575043694:1197534..1197819TCONS_00052303-exon-scaffold_213-1575043694:1197534..1197819Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1491911889:1198583..1198787TCONS_00052303-exon-scaffold_213-1491911889:1198583..1198787Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1510915933:1198583..1198787TCONS_00052303-exon-scaffold_213-1510915933:1198583..1198787Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1575043694:1198583..1198787TCONS_00052303-exon-scaffold_213-1575043694:1198583..1198787Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1491911889:1200728..1200896TCONS_00052303-exon-scaffold_213-1491911889:1200728..1200896Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1510915933:1200728..1200896TCONS_00052303-exon-scaffold_213-1510915933:1200728..1200896Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1575043694:1200728..1200896TCONS_00052303-exon-scaffold_213-1575043694:1200728..1200896Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1491911889:1201234..1201755TCONS_00052303-exon-scaffold_213-1491911889:1201234..1201755Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1510915933:1201234..1201755TCONS_00052303-exon-scaffold_213-1510915933:1201234..1201755Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1575043694:1201234..1201755TCONS_00052303-exon-scaffold_213-1575043694:1201234..1201755Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1491911889:1202755..1202926TCONS_00052303-exon-scaffold_213-1491911889:1202755..1202926Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1510915933:1202755..1202926TCONS_00052303-exon-scaffold_213-1510915933:1202755..1202926Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1575043694:1202755..1202926TCONS_00052303-exon-scaffold_213-1575043694:1202755..1202926Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1491911889:1203870..1204131TCONS_00052303-exon-scaffold_213-1491911889:1203870..1204131Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1510915933:1203870..1204131TCONS_00052303-exon-scaffold_213-1510915933:1203870..1204131Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1575043694:1203870..1204131TCONS_00052303-exon-scaffold_213-1575043694:1203870..1204131Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1491911889:1204315..1204586TCONS_00052303-exon-scaffold_213-1491911889:1204315..1204586Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1510915933:1204315..1204586TCONS_00052303-exon-scaffold_213-1510915933:1204315..1204586Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1575043694:1204315..1204586TCONS_00052303-exon-scaffold_213-1575043694:1204315..1204586Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1491911889:1204770..1206541TCONS_00052303-exon-scaffold_213-1491911889:1204770..1206541Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1510915933:1204770..1206541TCONS_00052303-exon-scaffold_213-1510915933:1204770..1206541Clytia hemisphaericaexon
TCONS_00052303-exon-scaffold_213-1575043694:1204770..1206541TCONS_00052303-exon-scaffold_213-1575043694:1204770..1206541Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:1196125..1206541 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0749345	0	0	0.0968538	1.14326e-09	0.00020892	4.78796e-09	0	1.19904	1.15779	0.132518	2.23278e-05	0.0313644	0.0371318	8.60886e-06	5.27041e-10	0.525351	8.86749e-07	0	0.704302	0.000959544	1.38628e-08	7.89961e-06	6.95449e-06	0	0.159079	0	3.37266e-10
Blast
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BLAST of TCONS_00052303 vs. Swiss-Prot (Human)
Match: KCNC1 (Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.070e-76
Identity = 167/465 (35.91%), Postives = 251/465 (53.98%), Query Frame = 1 
Query:  724 ADRIVINVGGTRHETFRSTLRVYPDTRLGWLSIDGSDVSDAFDPVLNEYFFDRHPTAFNQIMNFYRTGKLHTPADICGPLFEEELNFWGLDEKAMEPCCWPKYTEHRDAQENLKVFDSPLLNNQHDDDEIEQPAISVSRIPNYKEPEDQGFKSRFLKV-----FRPSYFNSIRWLSKKKLIWAVMEGHSERRPMLSKGVGFISLMFIVLSVLSLFF--HSMLLVISDKAE------------SNHEXXXXXXXXXXXXXXXWMSIELIIRFVSSPNRIQFLISFYTIVDLLTLITYALQFN-HGMDYHRTKDGVIDSNSITTDYKNIEMFSIXXXXXXXXXXXXXXXXQIFKHTIIASSREXXXXXXXXXXPVALFATIVYFFER---------ETNTGKFRTIPESIWWAVITITTVGYGDMSPETTWGKIFGIICAVFSVFILALPVSIIGTNFTLFYNYAQA 2031
            ++RIVINVGGTRH+T+RSTLR  P TRL WL+   +     +DP  +E+FFDRHP  F  I+N+YRTGKLH PAD+CGPL+EEEL FWG+DE  +EPCCW  Y +HRDA+E L  F    L+N  DD + + P  S        + ED+   ++ L +      RP  F    W   +  IWA+ E     R   ++ V F SL FI++S+ +     H     I +K E                     L  ++ +   W + E ++R +  PN+++F+ +   I+D + ++ + L+    G+     KD V+    +    + + +F +          R  VGL++  HT+ AS+ E LLL++ L L V +FAT++Y+ ER          +    F+ IP   WWAV+T+TT+GYGDM P+T  G + G +CA+  V  +A+PV +I  NF ++Y+ A A
Sbjct:    7 SERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVFAHILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDSFGGAPLDNSADDADADGPGDS-------GDGEDELEMTKRLALSDSPDGRPGGF----WRRWQPRIWALFEDPYSSR--YARYVAFASLFFILVSITTFCLETHERFNPIVNKTEIENVRNGTQVRYYREAETEAFLTYIEGVCVVWFTFEFLMRVIFCPNKVEFIKNSLNIIDFVAILPFYLEVGLSGLSSKAAKD-VLGFLRVVRFVRILRIFKL---------TRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMA 448
The following BLAST results are available for this feature:
BLAST of TCONS_00052303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNC16.070e-7635.91Potassium voltage-gated channel subfamily C member... [more]
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