TCONS_00052316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052316
Unique NameTCONS_00052316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1804

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052316 ID=TCONS_00052316|Name=TCONS_00052316|organism=Clytia hemisphaerica|type=transcript|length=1804bp
AATAGTAAAAATAATTACTGTTAATCAACAAAAAACGAACAATCAATCTT
GCTAATGACATTCCAATGAGTGACAGAGAAGTTGTTTTTGGTGGTATTAA
GaatatcttttaatatttttgacGATAATTGAAAGACTGCTATAGAGAGA
CATGAAAGATAAGAGCATGTTTGAAATTGGAATTTGCTACAGTGTCAACA
CTCTTGCGTTCCTAGTCTCGATGACCCattctcaaaatatgtaatggTAG
CTTCACTGGTGGCTAATGTATAATATATGCTAGTTGTTTACTGACTAAAC
TATAGGTTCACAAGACTTCAAATATAACCTTTCCTAGACTCTATCTAGGA
AAGACAAACAAGTTGTGGACcgtaaaatttcaaagcaataTCTGGCTGTG
ATAGCCAATAAATTGAAGTACTGTAAAATATCACAACACGTGCTTTCAAG
CTGATTCACTTATGTATATCATGAGGGAACCTTCTCTGCTTTCTCCATCA
ACCAGCGACACAAATAATATCACGATGAACAAAGTCTTATGTGTATATGC
CAATACTTCTCCTGAGAAATGCTACCCGACAAATAGTGTTCGCGGTTTTC
TAACCTTCTTGTTGGTTGTGGTGGTCGTCATATCGTTATTTGGGAATCTA
CTTTTATGTGGGATCGTATATCGTCGTAGTGCTATGCGATCGGCTATTAA
TCTACTACTGGCTAATGTGGCTTTAACAGACTTTTTATTGGTTTTGTTAC
ACGTTCCTGTAGCGTTAGCTGTCCTTAATTCCACTGGATGGCCTTTTAAT
CAACCATTTTGTCGGTTCAATGGATTCATATTCCAAATGTTGAATTGTGA
GAAAGTTCTAGTGCTGCTGGTGATATCTATAGATCGCTATTTTATAATCG
TTAAACGATGTGACACGCTAACGCCtcataaatcgaaaattttaatttgt
tcaaCTTGGGTGATCTCTTTTATTGTCGCCATCCCGCCTGTTCTTGGTTG
GGGCGTTTTTCGTTTCACAGAAGGGAGCACACAATGTTTGGTGCATGGTT
CCCTTGGTGATATAGACATGTTAGcaaaaagttatattttattttcatcg
gCTGTGACAGTTATGACTCCTACTTTAGCACTTTTATTTATCTATTATCG
CATTTTAAGAACTGTCAGGCGAAATGGATTTCGCATACAAAACCACCCTC
CAGTCACGCCCACCGCCATGCATAAAAAAGGGAAGTACTTTATCGATTAT
TGCTACAAGACAAGAATGTCAACGACTATCTTATTACTATCTCTCTTTTA
TATTCTATCCATATTCCCCTTGGGAGTTGTAAACATGATTATAGCTTTGC
ACCAATATGGAGCCGTTTCCATGGAAACTGTtgttggagttttgatattt
tcgtACCTACATTCAGCTAGTAGTCCTCTGCTGTATTActggcgtattaa
aaaatatcgGAAAATTGTGAATGACTTATGTGTACAAATATTTGTTTTCC
CGCATTGTGTGTTATTTTCCGCTCACCGGAAACGGCGGGTCCGCCCTCAC
GTCGTTTACAAAGTAGAAGAAATGAACTTGAAATATATTAATGGANTCAA
ATATTTGTTTTTCCGCATTGTGTGTTATTTTCCGCTCACCGGAAACGCCG
GGTCCGCCCTCACGTCGTTTACAAAGTAGAAGAAATGAACTTGAAATATA
TTAATGGATTATCAAAGTGAAAAACGAAAAACCAAATAGTCTTATTTTTA
TCTTAGgcgaaagtaaaaaaatatagtGTGTATCCGGAAAGTGGGTtaag
gaaa
Run BLAST on NCBI

protein sequence of TCONS_00052316-protein

>TCONS_00052316-protein ID=TCONS_00052316-protein|Name=TCONS_00052316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
MYIMREPSLLSPSTSDTNNITMNKVLCVYANTSPEKCYPTNSVRGFLTFL
LVVVVVISLFGNLLLCGIVYRRSAMRSAINLLLANVALTDFLLVLLHVPV
ALAVLNSTGWPFNQPFCRFNGFIFQMLNCEKVLVLLVISIDRYFIIVKRC
DTLTPHKSKILICSTWVISFIVAIPPVLGWGVFRFTEGSTQCLVHGSLGD
IDMLAKSYILFSSAVTVMTPTLALLFIYYRILRTVRRNGFRIQNHPPVTP
TAMHKKGKYFIDYCYKTRMSTTILLLSLFYILSIFPLGVVNMIIALHQYG
AVSMETVVGVLIFSYLHSASSPLLYYWRIKKYRKIVNDLCVQIFVFPHCV
LFSAHRKRRVRPHVVYKVEEMNLKYINGXKYLFFRIVCYFPLTGNAGSAL
TSFTK
Run BLAST on NCBI

transcript from alignment at scaffold_213:68934..70802-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052316 ID=TCONS_00052316|Name=TCONS_00052316|organism=Clytia hemisphaerica|type=transcript|length=1869bp|location=Sequence derived from alignment at scaffold_213:68934..70802- (Clytia hemisphaerica)
AATAGTAAAAATAATTACTGTTAATCAACAAAAAACGAACAATCAATCTT
GCTAATGACATTCCAATGAGTGACAGAGAAGTTGTTTTTGGTGGTATTAA
GAATATCTTTTAATATTTTTGACGATAATTGAAAGACTGCTATAGAGAGA
CATGAAAGATAAGAGCATGTTTGAAATTGGAATTTGCTACAGTGTCAACA
CTCTTGCGTTCCTAGTCTCGATGACCCATTCTCAAAATATGTAATGGTAG
CTTCACTGGTGGCTAATGTATAATATATGCTAGTTGTTTACTGACTAAAC
TATAGGTTCACAAGACTTCAAATATAACCTTTCCTAGACTCTATCTAGGA
AAGACAAACAAGTTGTGGACCGTAAAATTTCAAAGCAATATCTGGCTGTG
ATAGCCAATAAATTGAAGTACTGTAAAATATCACAACACGTGCTTTCAAG
CTGATTCACTTATGTATATCATGAGGGAACCTTCTCTGCTTTCTCCATCA
ACCAGCGACACAAATAATATCACGATGAACAAAGTCTTATGTGTATATGC
CAATACTTCTCCTGAGAAATGCTACCCGACAAATAGTGTTCGCGGTTTTC
TAACCTTCTTGTTGGTTGTGGTGGTCGTCATATCGTTATTTGGGAATCTA
CTTTTATGTGGGATCGTATATCGTCGTAGTGCTATGCGATCGGCTATTAA
TCTACTACTGGCTAATGTGGCTTTAACAGACTTTTTATTGGTTTTGTTAC
ACGTTCCTGTAGCGTTAGCTGTCCTTAATTCCACTGGATGGCCTTTTAAT
CAACCATTTTGTCGGTTCAATGGATTCATATTCCAAATGTTGAATTGTGA
GAAAGTTCTAGTGCTGCTGGTGATATCTATAGATCGCTATTTTATAATCG
TTAAACGATGTGACACGCTAACGCCTCATAAATCGAAAATTTTAATTTGT
TCAACTTGGGTGATCTCTTTTATTGTCGCCATCCCGCCTGTTCTTGGTTG
GGGCGTTTTTCGTTTCACAGAAGGGAGCACACAATGTTTGGTGCATGGTT
CCCTTGGTGATATAGACATGTTAGCAAAAAGTTATATTTTATTTTCATCG
GCTGTGACAGTTATGACTCCTACTTTAGCACTTTTATTTATCTATTATCG
CATTTTAAGAACTGTCAGGCGAAATGGATTTCGCATACAAAACCACCCTC
CAGTCACGCCCACCGCCATGCATAAAAAAGGGAAGTACTTTATCGATTAT
TGCTACAAGACAAGAATGTCAACGACTATCTTATTACTATCTCTCTTTTA
TATTCTATCCATATTCCCCTTGGGAGTTGTAAACATGATTATAGCTTTGC
ACCAATATGGAGCCGTTTCCATGGAAACTGTTGTTGGAGTTTTGATATTT
TCGTACCTACATTCAGCTAGTAGTCCTCTGCTGTATTACTGGCGTATTAA
AAAATATCGGAAAATTGTGAATGACTTATGTGTACAAATATTTGTTTTCC
CGCATTGTGTGTTATTTTCCGCTCACCGGAAACGGCGGGTCCGCCCTCAC
GTCGTTTACAAAGTAGAAGAAATGAACTTGAAATATATTAATGGANTCAA
ATATTTGTTTTTCCGCATTGTGTGTTATTTTCCGCTCACCGGAAACGCCG
GGTCCGCCCTCACGTCGTTTACAAAGTAGAAGAAATGAACTTGAAATATA
TTAATGGATTATCAAAGTGAAAAACGAAAAACCAAATAGTCTTATTTTTA
TCTTAGGCGAAAGTAAAAAAATGTAGTGTTTNTGAAAAACGAAAAACCAA
ATAGTCTTATTTTTATCTTAGGCGAAAGTAAAAAAATATAGTGTGTATCC
GGAAAGTGGGTTAAGGAAA

Coding sequence (CDS) from alignment at scaffold_213:68934..70802-

>TCONS_00052316 ID=TCONS_00052316|Name=TCONS_00052316|organism=Clytia hemisphaerica|type=CDS|length=1218bp|location=Sequence derived from alignment at scaffold_213:68934..70802- (Clytia hemisphaerica)
ATGTATATCATGAGGGAACCTTCTCTGCTTTCTCCATCAACCAGCGACAC
AAATAATATCACGATGAACAAAGTCTTATGTGTATATGCCAATACTTCTC
CTGAGAAATGCTACCCGACAAATAGTGTTCGCGGTTTTCTAACCTTCTTG
TTGGTTGTGGTGGTCGTCATATCGTTATTTGGGAATCTACTTTTATGTGG
GATCGTATATCGTCGTAGTGCTATGCGATCGGCTATTAATCTACTACTGG
CTAATGTGGCTTTAACAGACTTTTTATTGGTTTTGTTACACGTTCCTGTA
GCGTTAGCTGTCCTTAATTCCACTGGATGGCCTTTTAATCAACCATTTTG
TCGGTTCAATGGATTCATATTCCAAATGTTGAATTGTGAGAAAGTTCTAG
TGCTGCTGGTGATATCTATAGATCGCTATTTTATAATCGTTAAACGATGT
GACACGCTAACGCCTCATAAATCGAAAATTTTAATTTGTTCAACTTGGGT
GATCTCTTTTATTGTCGCCATCCCGCCTGTTCTTGGTTGGGGCGTTTTTC
GTTTCACAGAAGGGAGCACACAATGTTTGGTGCATGGTTCCCTTGGTGAT
ATAGACATGTTAGCAAAAAGTTATATTTTATTTTCATCGGCTGTGACAGT
TATGACTCCTACTTTAGCACTTTTATTTATCTATTATCGCATTTTAAGAA
CTGTCAGGCGAAATGGATTTCGCATACAAAACCACCCTCCAGTCACGCCC
ACCGCCATGCATAAAAAAGGGAAGTACTTTATCGATTATTGCTACAAGAC
AAGAATGTCAACGACTATCTTATTACTATCTCTCTTTTATATTCTATCCA
TATTCCCCTTGGGAGTTGTAAACATGATTATAGCTTTGCACCAATATGGA
GCCGTTTCCATGGAAACTGTTGTTGGAGTTTTGATATTTTCGTACCTACA
TTCAGCTAGTAGTCCTCTGCTGTATTACTGGCGTATTAAAAAATATCGGA
AAATTGTGAATGACTTATGTGTACAAATATTTGTTTTCCCGCATTGTGTG
TTATTTTCCGCTCACCGGAAACGGCGGGTCCGCCCTCACGTCGTTTACAA
AGTAGAAGAAATGAACTTGAAATATATTAATGGANTCAAATATTTGTTTT
TCCGCATTGTGTGTTATTTTCCGCTCACCGGAAACGCCGGGTCCGCCCTC
ACGTCGTTTACAAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033085XLOC_033085Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052316-proteinTCONS_00052316-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052316-exon-scaffold_213-1575043694:69047..70802TCONS_00052316-exon-scaffold_213-1575043694:69047..70802Clytia hemisphaericaexon
TCONS_00052316-exon-scaffold_213-1575043694:68934..68981TCONS_00052316-exon-scaffold_213-1575043694:68934..68981Clytia hemisphaericaexon
TCONS_00052316-exon-scaffold_213-1510915933:69047..70802TCONS_00052316-exon-scaffold_213-1510915933:69047..70802Clytia hemisphaericaexon
TCONS_00052316-exon-scaffold_213-1510915933:68934..68981TCONS_00052316-exon-scaffold_213-1510915933:68934..68981Clytia hemisphaericaexon
TCONS_00052316-exon-scaffold_213-1491911889:69047..70802TCONS_00052316-exon-scaffold_213-1491911889:69047..70802Clytia hemisphaericaexon
TCONS_00052316-exon-scaffold_213-1491911889:68934..68981TCONS_00052316-exon-scaffold_213-1491911889:68934..68981Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:68934..70802 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.89244	2.68791	0.434231	0.187771	2.59252	1.6934	2.7463	2.20593	1.88292	3.41008	3.0687	1.71555	2.74863	1.82239	1.20661	2.20632	1.7353	1.63928	2.26981	2.94758	1.55944	0.938521	4.1311	3.70401	1.5674	2.48039	2.4105	2.37015	3.01601	3.19392
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00052316 vs. Swiss-Prot (Human)
Match: GPR63 (Probable G-protein coupled receptor 63 OS=Homo sapiens GN=GPR63 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 2.647e-39
Identity = 112/320 (35.00%), Postives = 174/320 (54.37%), Query Frame = 3 
Query:  651 LLCGIVYRRSAMRSAINLLLANVALTDFXXXXXXXXXXXXXXNSTGWPFNQPFCRFNGFIFQMLNCEKVLVLLVISIDRYFIIVKRCDTLTPHKSKILICSTWVISFIVAIPPVLGWGVFRFTEGSTQCLVHGSLGDIDMLAKSYILFSSAVTVMTPTLALLFIYYRILRTVRRNGFRIQNHPP---------VTPTAMHKKGKYFIDYCYKTRMXXXXXXXXXXXXXXXXXXGVVNMIIALHQ---YGAVSMETVVGVLIFSYLHSASSPLLYYWRIKKYRKIVNDLCVQIFVF-PHCVLFSAHRKRRVRPHVVYKVEE 1571
            ++C +VY+++AMRSAIN+LLA++A  D LL +L++P AL  + +T W F + FCR +   F +   E V +LL+ISIDR+ IIV+R D L P+++K+LI  +W  SF VA P  +G    +    + QC V G   +     ++Y++  S ++   P L +L+ +  IL T+R N  RI ++P          +   ++ +  +  ID  +KTR  TTIL+L   +I+   P    +++    +   Y     E    +L   YL SA +PL+YYWRIKK+     D+  + F F P       H KRR+RP  VY   E
Sbjct:  101 VVCLMVYQKAAMRSAINILLASLAFADMLLAVLNMPFALVTILTTRWIFGKFFCRVSAMFFWLFVIEGVAILLIISIDRFLIIVQRQDKLNPYRAKVLIAVSWATSFCVAFPLAVGNPDLQIPSRAPQC-VFGYTTNPGY--QAYVILISLISFFIPFLVILYSFMGILNTLRHNALRIHSYPEGICLSQASKLGLMSLQRPFQMSIDMGFKTRAFTTILILFAVFIVCWAPFTTYSLVATFSKHFYYQHNFFEISTWLLWLCYLKSALNPLIYYWRIKKFHDACLDMMPKSFKFLPQ---LPGHTKRRIRPSAVYVCGE 414
The following BLAST results are available for this feature:
BLAST of TCONS_00052316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GPR632.647e-3935.00Probable G-protein coupled receptor 63 OS=Homo sap... [more]
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