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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052317 ID=TCONS_00052317|Name=TCONS_00052317|organism=Clytia hemisphaerica|type=transcript|length=1554bpRun BLAST on NCBI protein sequence of TCONS_00052317-protein >TCONS_00052317-protein ID=TCONS_00052317-protein|Name=TCONS_00052317-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp MKQKISTYCHVAQDQVLSVPDVSSVYRVPLLLHQQGFVDYVIRKLELDVPRun BLAST on NCBI transcript from alignment at scaffold_213:82456..93371- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052317 ID=TCONS_00052317|Name=TCONS_00052317|organism=Clytia hemisphaerica|type=transcript|length=10916bp|location=Sequence derived from alignment at scaffold_213:82456..93371- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_213:82456..93371- >TCONS_00052317 ID=TCONS_00052317|Name=TCONS_00052317|organism=Clytia hemisphaerica|type=CDS|length=12111bp|location=Sequence derived from alignment at scaffold_213:82456..93371- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052317 vs. Swiss-Prot (Human)
Match: PYRG1 (CTP synthase 1 OS=Homo sapiens GN=CTPS1 PE=1 SV=2) HSP 1 Score: 465.692 bits (1197), Expect = 1.612e-157 Identity = 210/354 (59.32%), Postives = 277/354 (78.25%), Query Frame = 3
Query: 69 SREIDESMKQKISTYCHVAQDQVLSVPDVSSVYRVPLLLHQQGFVDYVIRKLELDVPSLKLCPKSFLCQWRQLAERSDHPFEDVNIAVVGKYIKFEDTYMSVIKALKHSAMACRRTLKIKWVDAEMLEESRRQTDPFNYHEAWQLLCSCQGVLVPGGFGSRGSEGKVLAAKWARENKKPYLGICLGLQIAVIEFARHVLKWEGANSVEIDPETPHPVIIEMPEHNQGQMGGTLRLGQRKTIFKTKNSIARKLYGNPDYVEERHRHRYEVNPANVQFFEENGFHFVGQDIDGERMEIVELDDHPFFLAVQFHPEFLSRPLKPSPPYLGFILASIGKLDGYISRGGRLSPQSSFHE 1130
S +D S+K+KIS +CHV +QV+ V DVSS+YRVPLLL +QG VDY +R+L+L + + P+ L +W+++A+R D E +IA+VGKY KF D+Y SVIKAL+HSA+A L+IK++D+ LE Q +P YHEAWQ LCS GVLVPGGFG RG+EGK+ A WAR KKP+LG+CLG+Q+AV+EF+R+VL W+ ANS E DP T HPV+++MPEHN GQMGGT+RLG+R+T+F+TKNS+ RKLYG+ DY+EERHRHR+EVNP + EE G FVGQD++GERMEIVEL+DHPFF+ VQ+HPEFLSRP+KPSPPY G +LAS+G+L Y+ +G RLSP+ ++ +
Sbjct: 219 SNPLDTSVKEKISMFCHVEPEQVICVHDVSSIYRVPLLLEEQGVVDYFLRRLDLPI---ERQPRKMLMKWKEMADRYDRLLETCSIALVGKYTKFSDSYASVIKALEHSALAINHKLEIKYIDSADLEPITSQEEPVRYHEAWQKLCSAHGVLVPGGFGVRGTEGKIQAIAWARNQKKPFLGVCLGMQLAVVEFSRNVLGWQDANSTEFDPTTSHPVVVDMPEHNPGQMGGTMRLGKRRTLFQTKNSVMRKLYGDADYLEERHRHRFEVNPVWKKCLEEQGLKFVGQDVEGERMEIVELEDHPFFVGVQYHPEFLSRPIKPSPPYFGLLLASVGRLSHYLQKGCRLSPRDTYSD 569 The following BLAST results are available for this feature:
BLAST of TCONS_00052317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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