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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052338 ID=TCONS_00052338|Name=TCONS_00052338|organism=Clytia hemisphaerica|type=transcript|length=3149bpRun BLAST on NCBI protein sequence of TCONS_00052338-protein >TCONS_00052338-protein ID=TCONS_00052338-protein|Name=TCONS_00052338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=828bp MVRIFIKGGVWSNTEDEILKAAVMKYGKNQWSRIASLLHKKSGKQCKARWRun BLAST on NCBI transcript from alignment at scaffold_213:273257..322462- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052338 ID=TCONS_00052338|Name=TCONS_00052338|organism=Clytia hemisphaerica|type=transcript|length=49206bp|location=Sequence derived from alignment at scaffold_213:273257..322462- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_213:273257..322462- >TCONS_00052338 ID=TCONS_00052338|Name=TCONS_00052338|organism=Clytia hemisphaerica|type=CDS|length=49740bp|location=Sequence derived from alignment at scaffold_213:273257..322462- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052338 vs. Swiss-Prot (Human)
Match: CDC5L (Cell division cycle 5-like protein OS=Homo sapiens GN=CDC5L PE=1 SV=2) HSP 1 Score: 898.271 bits (2320), Expect = 0.000e+0 Identity = 496/803 (61.77%), Postives = 621/803 (77.33%), Query Frame = 3
Query: 519 MVRIFIKGGVWSNTEDEILKAAVMKYGKNQWSRIASLLHKKSGKQCKARWYEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPLVGRTATQCLERYEYLLDQAQKKEGDGGSSEDPRKLRPGEIDPAPETKPARPDPIXXXXXXXXXLSEARARLANTQGKKAKRKAREKQLEEARRLASLQKRRELRAAGIQINRYRKKKRGVDYNAEIPFERKPAQGFYDTSNEQVKALEPDYKKLRQEHMXXXXXXXXXXXXXXXXXXXXXXXXXNDLPGAIASINKMMSQENTKKRSKLVLPTPQVTDAELEEVVKLGIASEQAKEFVE--GESESATKGLLSDYSVTPGTNLPMRTPRTPAQQDNILQEAQNILNLQQVDTPLKGGLNTPMYESNFDGATPQRQIQQTPNMMITTPYRTPGPEGQGFTPR-GMTPK--IGGTPGAGATPSVRDNLSINREDAF--YDDLSSAKQVQMENKNQLLAGLSSLPKPTNDFEIVVPEKFEIDMEE-PTDPNFVEDMADVEARNYENLXXXXXXXXXXXXQSVQRNMPRPSDVNTSVLRPNHMKVDLNSLQMAEELIKEEMIKMLRNDIVSHPTETQMFALNQKKTRAAAQTVMATNKRVLSEEPLEDVTDDEIKAARELLKEEIEVVKQGMNHGDLTMEAYTKVWDECYGQLLFLPNQQRYTRSALASKKDRVESAEKRLEIYRGQMTEDAKRAAKSEKKLKVLLGGYQSRAIALNKQISDLHDQLEQSRIQCDTFDMLKKQEKHAVPRRLAALEEDVTRQTDREKALQHQFSDLLYE 2903
M RI IKGGVW NTEDEILKAAVMKYGKNQWSRIASLLH+KS KQCKARWYEWLDPSIKKTEWSREE+EKLLHLAKLMPTQWRTIAP++GRTA QCLE YE+LLD+A +++ + +++DPRKL+PGEIDP PETKPARPDPIDMDEDE+EMLSEARARLANTQGKKAKRKAREKQLEEARRLA+LQKRRELRAAGI+I + RK+KRGVDYNAEIPFE+KPA GFYDTS E +AL+ D++KLRQ+ +D + R +E RDR+KDK K++KE+DLP AI + + E TKKRSKLVLP PQ++DAEL+EVVK+G ASE A++ E G + SA+ LLS+Y+VT ++ +RTPRTPA QD ILQEAQN++ L VDTPLKGGLNTP++ES+F G TPQRQ+ QTPN +++TP+RTP +G TPR G TPK I TP G TP +RD L+IN ED Y D S KQ++ E++ L GL LP P NDFEIV+PE E ++EE D ++ED ADV+AR + E +R ++VQ+++PRPS+VN ++LRP +++ L LQ +EELIK+EMI ML D++ HP E + N+K T + + L P E + +E+K A+++L +E+EVVKQGM+HG+L+ EAY +VW+ECY Q+L+LP Q RYTR+ LASKKDR+ES EKRLEI RG MT +AKRAAK EKK+K+LLGGYQSRA+ L KQ++DL DQ+EQ+ ++ TF+ LKK E A+PRRL L+EDV RQ +REK LQH+++DLL E
Sbjct: 1 MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKKDKQHLKRKKESDLPSAILQTSGV--SEFTKKRSKLVLPAPQISDAELQEVVKVGQASEIARQTAEESGITNSASSTLLSEYNVT-NNSVALRTPRTPASQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVINSTP--GRTP-LRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGLLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPLNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEP---SGNKKGKTVGFGTNNSEHITYLEHNPYEKFSKEELKKAQDVLVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPGQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLKEDVQRQQEREKELQHRYADLLLE 794 The following BLAST results are available for this feature:
BLAST of TCONS_00052338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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