TCONS_00052347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052347
Unique NameTCONS_00052347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1949

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052347 ID=TCONS_00052347|Name=TCONS_00052347|organism=Clytia hemisphaerica|type=transcript|length=1949bp
GGAAGATAGAGGCTAATATACTAAAAGATGTTGGCGAAAGCTCTATTAAT
CGTTCAAATAGGAAGGGCGTTGTCCTACAACGTACCGCCCTTCGGGCACA
CTGCAGCTGAAGGTACACAACATGGTCGAGAGAAAGACGATCCACTTTAC
TACCATACAAACTCCGATATCCCTCATCTCCCCTTTGTGACGGGTTTCCT
CGGCACACATGGCACCTACCGATTTCTGAACATCGCTGAGCAGGTCGCTA
CCATGATAGGAGATGgGAAACATGGCTTGTGGCGAGTGCAACACAATGGT
TTCATCCGCGAATACCGAAAGAAGGGGGCAACCGGCCTACCACCCGGGAT
CGAAGCAAACTCTCAAACTACTTTGCAAGATAACGGATACCAACAAGCTG
TTTTACATAGTTATTCACATCATCTTCCGGACGAAGGTTTTTCCGGATAC
AAGTTTCCGGACCAAGCCGTTTCCGATGGCTCTGATGGAATCGAAGGTCA
CCAGAATTGGATCGATTTAAGTATTTATCATGAGAAGTATGGTGGAAAGT
ATAATAATCATGTTCCCATCGATTTGCCACAATATTACTGTACACTTTCA
CAGGATAATTATCCTCACATTAAAAATGCATGGCAATATTTGAGAGCTCA
ACCAAACGCTAACAAGATCGGACCATTAGGAATTCGAGCAGGTCTTGACA
TTAAAGAATTCACTATGAACGCTGTAAGGGTCCACTTATTTGAAGATGCT
GGAATCTGGGTCAATGTTGGCGTTGGTGACAGTAATTTAGATAGTAAACT
GAAGGACTTGAAAGACTTTCGAGATAAAGTGCAACACGTTAATTACCAGG
CTATCGACTTATCACAAGTTCAATACGAAATCTACTACATTGAGCGATTA
TTCTACAACATGCCTTACCTCTTTGTTTCGCTGGTGATTGACAACAAACC
AGGAGAGCCATCTCATTTCTCTTTCGTTCGTCCACATGGTGTATACTTTG
AAGAGCTCAAGAAACATCGTGATGTTTCAACACTTAACACTAACGAACAT
TACGACCCTCAAGTACCGATCAAAGATTACCCTTTTAAAGGGAATACAAc
tatgcagaaaaaaatcggtgttCCAGTATACGGTGTCCATAATCCTCATC
GTAGAGCATTTAACATGAGCGGTGGAGCGTGTCCGGAGAAGGGTGGCGAC
TTTGGTAGGTACCCATGGGGCAACCCTGGTAGTGGCTGGCCCAATACTTA
TGAAGAAGTGACTCCGATTTGTGACGCTGTCATGATAGATGTCAAGTTCT
GGGCGAACCTTGATCAACCCTGGGATACTCTGGACGTTTTCCTTGGTAAT
GCTGGGTTCAAAGATCAAAGACAGGCTGACATTATCATGGATGCAAACCT
GTACGGAAAATTCGAAGACCCTTATCTTGAAGGACGAACCAACCCTCACA
TGGTTGATATGACAATAAACGGACAAACTGTTGGACACGAGGAAAACACA
CGGAAGCCAAATCCCGTCAGGTTCACACTTGACTACACACGATTGGGAAG
TTATCTGAATTTCAACAATGTTTCAGCGCTTCACAACAATCTGATTAACA
TTGAGCAGCCTTTGGATgatcagaaaaatcaaaatatctgcCCTGTTcaa
ccaaacaacaaagaagAATGCCGTGACGAACAATTGATGGTGGCGATTTT
AGTGCTGGTGGGTGTTATCTGTATCATTAACATGTGCGCATTGTTTTGCT
GTTGCGCATGGCAACGAAGCAAGTCGTCATCGAAACATGATGGAAATAAC
GAAAGCCGAGCATGTGGAGTCGACAACCGAGTGGGTAGAGTCGACCTCGG
TGTCGACAACCGAGCGGGCGGGTTTGACCATGGAGTCAACAACCGAGCGG
GCGGGTTCGACCACGGAGTCGACAACCGAGCGGGTGGAGTCCACCTCGG
Run BLAST on NCBI

transcript from alignment at scaffold_213:491099..497896-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052347 ID=TCONS_00052347|Name=TCONS_00052347|organism=Clytia hemisphaerica|type=transcript|length=6798bp|location=Sequence derived from alignment at scaffold_213:491099..497896- (Clytia hemisphaerica)
GGAAGATAGAGGCTAATATACTAAGTAGGTTAATTGATTTTCTAATCGTC
ATTTTTGTAACAAGTTGTAATTCAAAAAAATGCTTCTATTTTATATCTTT
TTCTAAATTTCTAAAGTTTAGGAATTATCATATTTTCAATATATTTTCAA
ATTTTGGAAATATTTTANTTTATATCTTTTTCTAAATTTCTAAAGTTTAG
GAATTATCATATTTTCAATATATTTTCAAATTTTGGAAATATTTTATATT
TCGAAAAGTTGGAAATATCTTTTTATTTCAATGAATTTCAGATTTGGAAA
TATAGAAAAATTTCATATTTCTTTTTTGCGAACAATGTGTTCGGGTTTGT
TAAAAAAAAAAATACAAAAAGATCATCATCATCATTGCTCGACCGCAGTC
GAGACAATGGATTCCACTCGCTGGCGCCAGGAGTCGCGGTTGCGCATAGC
AGTGCCCAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAATAAAAATTTGATTACTGCAGTGACGTAGGAAAAAATC
ATGTACTGAAACCATGTACTGAAAAAAATCATGTACTGAAATCATGCCAC
CACTGAGACAGGGGTAAGATTATCTCCAAGACCATGAACATATGACGAAT
AACTTTAACATTCAGGAATTCAACTGAGTCTCGGGGATAATTAGCAGTGA
GCTTAAAGCTAGACTCAGCTTGGTTAAGATGAGCTAAGCAAAGCTTGAGT
TTCTCTTCCCCATGCTCCCAGATGAAAAAAACATGATCAGCACTATTGAG
AAGNAGCAAAGCTTGAGTTTCTCCTCCCCATGCTCCCAGATGAAAAAACA
TGATCAGCACTATCGAGAAATTTTTGCTTGTAATCGTCAATGAAAAATGC
AACAAATGCAAAATGCATAATGGACCTTCATTATAACATCATTAATACAT
CATTATAATACAACACTTTCATATGTGTTAGGAAAATGATTATAACTCAT
TAATAGTCTTAATACATCATTAATACATCATTATAACTCATTTTATGTCA
TTTCTTTCAATAATCAATATTTATCTTTTGGTTTTTCACTCTCGTTTCTA
ATTTTTCTAATATCATTATTTTTCAAGTTTAGAGCAGCGATTTCAATATT
ATAGTATGTCATTTTTGATAGATTTCTTTTCTTAAAAATGTAAATATATT
TTCGATCGATGCAGGATTCCCCAAGCAGCAGCTCTTTAAATATAAGGGGT
TTTTGAACAAAATCTTCAAACTTTTACTAATATGATCAACGATTCTATCA
TTTTTCGATGCGACTGTCACGTTTTTATTCAAAATACGTTGAAATTTTTC
GTCAAGTAAATCACAACTACTTTTAGGGCCTTTCATTGTTTTTTTCTCGC
CCAAAGTAGCAGAACAACTAACAACGTTACAATAGAATGAATGAGCAAAA
TCGAGCAAAATGTATAATGGGCCTACTACCTAATGATAAATATAGAATGG
AAATAGAAAAGTATGTAAAATTAGAAACCGTAAANATGGGCCTACTACCT
AATGATAAATATAGAATAGAAATAGAAAAGGATGTAGAATTAGAAACCGT
AAAAGGACTGAAAAAATAAACGAATGGTCATCAAACTTTGCTGAAACATC
GATTTCCGGCATATTTCCGGCATTATCTCTTTTCCCGAAAATCGGGCTCC
GTCACTTTTTGGGAATCGCCACTTTGCATCACTGTGCAAAAAATCAGAAA
AAAACTAATGAGCCAATCCCGAGAAAAGCTGGTAACGGACGAAGGAACAC
ACGAAAACACGAACACACGGACATCGGTTACAAAAGGAAGAAATGTTAGC
GGGAATTTAATCCACCAAATTTTCTTCCTGCCAAAATTTCTTCCTTTAAG
GATATATCCAATAAAAGTTAACAGTCCATCTAAATTCTATTACGTCCATG
GTAATATCCATATAAAAAGAACATTATCGATTTAAATCACCTCCACAACG
AACCCATTTAGGGGCTTACTTTGTATCCGCAGGGACACTAACGACAGTTA
AATAACCATGCAGTTAAAGGTAAATACTTCCGTCCGGGTTTTATAGACAC
TAAGTTACGAAATAACCCGAATCGAGGAGAGGTATAAAAAGCCCTGAAAA
TGAACAAAAAAAGGAAGAAAAGAAAGGAAGAGAGGAAGAAGTCCACGGCG
AATGGCTCAAGTTCGAAATTAATTATACGATCATATTTCACGTATNAAGA
AGTCCACGGCGAATGGCTCAAGTTTGAAATTAATTACGCGATCATATTTC
ACGTATCTGCTGGAAGATAGAGGCTAATATACTAAGTAGGTTAATTGATT
TTCTAATCGTCATTTTTGTAACAAGTTGTAATTCAAAAAAATGCTTCTAT
TTTATATCTTTTTCTAAATTTCTAAAGTTTAGGAATTATCATATTTTCAA
TATATTTTCAAATTTTGGAAATATTTTATATTTCGAAAAGTTGGAAATAT
CTTTTTATTTCAATGAATTTCAGATTTGGAAATATCATGAAGTATGATTT
TTCCTAAACTTTGGAAATATAGAAAAATTTCATATTTCTTTTTGCGAACA
ATGTGTTCGGGTTTGTTAAAAAAAAAATACAAAAAGATAGGGGCTTTGCT
TTGTTTTTGATCGGCCAGCGAATAAAAATTAACTTCGGCGAATTCTAGAT
TCAAGGGCGGCAAATTTTTAGCAAGCGCAGTGTATTGATTAGCTAGCGTG
GATATGTACTTAAGGTGGCGAGCCGAATTTTTAGACCGGTGAGTTGCAAT
TTTTTCGTACCTTGTACCATCGAAATTCGTCGTTCACCAGGCCGCTAAAT
AAGACCCCCGAAGAGAAAATTCGAAACATATGGCCTGAAACGACTGAAAG
TTAAGGGGATCGAATTTTTTACTAGCGGTAATTCTGGTTAATTATACTGT
TCTTTCATTTTAGAAGATGTTGGCGAAAGCTCTATTAATCGTTCAAATAG
GAAGGGCGTTGTCCTACAACGTACCGCCCTTCGGGCACACTGCAGCTGAA
GGTTTGTAATTTGCCTCTTATTACAGTTTTATTTTATACCTATATTTGAT
TTAAAGAATTTTATACACAAGTTTGGTTCCTTACGTTGAAAATTTTTTTA
AATTTTACATCTTGGTTACAGCTTACATTATGAGCTGATTAGTGAGACAG
TAGTTTAACTATTTTAGTACAAATACAGCATTTATTTTTTAAAGAAAGCA
TGCTCCTATAAGAAAAAGTCAACAATCAAATTTTAATTTTTTACATTTTT
GGAGATAAAAACAGATACTAGATACTAGATAGGACGCCTAAATATTACGA
CAGCTATCCTTCTTTTCTTTCAATGTTTCAACCGGTATCCTCGTGTTTCT
ACTGCAGGTACACAACATGGTCGAGAGAAAGACGATCCACTTTACTACCA
TACAAACTCCGATATCCCTCATCTCCCCTTTGTGACGGGTTTCCTCGGCA
CACATGGCACCTACCGATTTCTGAACATCGCTGAGCAGGTCGCTACCATG
ATAGGAGATGGTAAGTTTTTATAAACACAAAATTTTATATACATATTTGT
GGATTTCAAATGTGCCTTCACACCCATCTAAAAAAAATACCAATCTGGAA
GTTTTCTTCGGATGGGGTCAAAAGTAGGGTGGCATTTTTCACGGCACTCC
TAGATTCGGACCTAAACCCTACATATCTCACCAACACAAGAAAAAAGTGC
GTGTCCCATCGTTTCTTTTATTGTTTTATGGGACAAGAAAAGAAAAGTGA
GGGAAATACCCAAATGACACGCTAATTTTGTCCCCGGGACAATGGAGCAA
AATTGATTCGAATCAATTTTGCTCCATTGTCCCGGGGACAAAAGTGAGAC
ACACAAATGTTTTTGAAAATGTTGTCGATTTCACTTATATTGTTAAAAAG
AAAAATGAGGTGTAGACACGAGAAAGCCTTTCAGGTTGGTGGGATGGAGC
ATGTTGCATTGTACCAACGTGAAAATAAAACTTCTCGTGTCCCCTAGCCG
TAAAGGGTAACCCTTATAGACCGTGATAAAGTCCCATATGAAATCTAATC
ACGCTTCTCACAAAATTGTAATACCTCATCGGCCCTTTCTACACCGGCCA
TTTTTAGCATTATTTTCACTGACGTCATTTATAAGGACTGGCGTAAGGGA
TCGGAATTAAATATAGGACCGGGTTAAAAATGGAAACAAATTTAGCTTTG
GCGTAATAAAGGTCGGTGCAAAATTAGGGCCGGTGTAAAATTAGGGCCGA
TAAGATAATGCCTTTCTTAATTTTCATTCATCAGGGAAACATGGCTTGTG
GCGAGTGCAACACAATGGTTTCATCCGCGAATACCGAAAGAAGGGGGCAA
CCGGCCTACCACCCGGGATCGAAGCAAACTCTCAAACTACTTTGCAAGAT
AACGGATACCAACAAGCTGTTTTACATAGTTATTCACATCATCTTCCGGA
CGAAGGTTTTTCCGGATACAAGTTTCCGGACCAAGCCGTTTCCGATGGCT
CTGATGGAATCGAAGGTCACCAGAATTGGATCGATTTAAGTATTTATCAT
GAGAAGTATGGTGGAAAGTATAATAATCATGTTCCCATCGATTTGCCACA
ATATTACTGTACACTTTCACAGGATAATTATCCTCACATTAAAAATGCAT
GGCAATATTTGAGAGCTCAACCAAACGCTAACAAGATCGGACCATTAGGA
ATTCGAGCAGGTCTTGACATTAAAGAATTCACTATGAACGCTGTAAGGGT
CCACTTATTTGAAGATGCTGGAATCTGGGTCAATGTTGGCGTTGGTGACA
GTAATTTAGATAGTAAACTGAAGGACTTGAAAGACTTTCGAGATAAAGTG
CAACACGTTAATTACCAGGCTATCGACTTATCACAAGTTCAATACGAAAT
CTACTACATTGAGCGATTATTCTACAACATGCCTTACCTCTTTGTTTCGC
TGGTGATTGACAACAAACCAGGAGAGCCATCTCATTTCTCTTTCGTTCGT
CCACATGGTGTATACTTTGAAGAGCTCAAGAAACATCGTGATGTTTCAAC
ACTTAACACTAACGAACATTACGACCCTCAAGTACCGATCAAAGATTACC
CTTTTAAAGGGAATACAACTATGCAGAAAAAAATCGGTGTTCCAGTATAC
GGTGTCCATAATCCTCATCGTAGAGCATTTAACATGAGCGGTGGAGCGTG
TCCGGAGAAGGGTGGCGACTTTGGTAGGTACCCATGGGGCAACCCTGGTA
GTGGCTGGCCCAATACTTATGAAGAAGTGACTCCGATTTGTGACGCTGTC
ATGATAGATGTCAAGTTCTGGGCGAACCTTGATCAACCCTGGGATACTCT
GGACGTTTTCCTTGGTAATGCTGGGTTCAAAGATCAAAGACAGGTAAGGT
TTTTTTCTGTTGTTAACTATACCTAGTTACCGAGTTTTCCGTTATAATAT
AAGGAATGCTTTGAAACTTTTTAAGATATCTGAAGGCTTCAAAATTTTTG
AATGTTCTTATAAAAAACGTGTAAAGTGCCTTCATAGTGTTTCAGAAATG
GGTACAGAAAACCTTGTTTCATACACAAAGTTCAGCATTGAGAACAAAAT
AATAATTTTTCAATAAAGGCTGACATTATCATGGATGCAAACCTGTACGG
AAAATTCGAAGACCCTTATCTTGAAGGACGAACCAACCCTCACATGGTTG
ATATGACAATAAACGGACAAACTGTTGGACACGAGGAAAACACACGGAAG
CCAAATCCCGTCAGGTTCACACTTGACTACACACGATTGGGAAGTTATCT
GAATTTCAACAATGTTTCAGCGCTTCACAACAATCTGATTAACATTGAGC
AGCCTTTGGATGATCAGAAAAATCAAAATATCTGCCCTGTTCAACCAAAC
AACAAAGAAGGTAATTGTCTTCCAGTCTCTTCATAGTTTATACAATATAC
AGCTCCAGGCTTTTATGCCTTACTCTTGGTCCACTGTATAAGCACTGCTA
TAGGCGGCCTAGTGCCTCCCCCCACGGGGATTTTCTTTTTAATAGGATTA
AACATAATAAAAGTTTTTAACAAAAGAAGTTTATCAATAGAGATGAATGA
AAGAATGTTTAAAACAAAGCTGATTGGGTTATGTTTGGAAAATCTCTATT
GTTTCATTAAAACTTCAGTGTGCATGCGATGTATCCAGAAAAATTCAATA
TTCAAAATAATAGCGCACTAATCCCTTCTTTGATATATGAAAAGTTTTTT
TAGATTGTTGGGTTTTATTTCAAAATCTAATGAGCCTTGTAAGTTGTAAT
CAAGACTGAATTAATTTTAAACCATAAATAAACCATGTCCGAAAACACCA
GAAAACTTCATCGAAATAGTATACTAAGCAATCTAAATCATTGATTGAAC
GATGTGTTTTTCCAGAATGCCGTGACGAACAATTGATGGTGGCGATTTTA
GTGCTGGTGGGTGTTATCTGTATCATTAACATGTGCGCATTGTTTTGCTG
TTGCGCATGGCAACGAAGCAAGTCGTCATCGAAACATGATGGAAATAACG
AAAGCCGAGCATGTGGAGTCGACAACCGAGTGGGTAGAGTCGACCTCGGT
GTCGACAACCGAGCGGGCGGGTTTGACCATGGAGTCAACAACCGAGCGGG
CGGGTTCGACCACGGAGTCGACAACCGAGCGGGTGGAGTCCACCTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033096XLOC_033096Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052347-exon-scaffold_213-1575043694:497873..497896TCONS_00052347-exon-scaffold_213-1575043694:497873..497896Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1575043694:494796..494883TCONS_00052347-exon-scaffold_213-1575043694:494796..494883Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1575043694:494287..494439TCONS_00052347-exon-scaffold_213-1575043694:494287..494439Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1575043694:492404..493512TCONS_00052347-exon-scaffold_213-1575043694:492404..493512Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1575043694:491887..492178TCONS_00052347-exon-scaffold_213-1575043694:491887..492178Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1575043694:491099..491381TCONS_00052347-exon-scaffold_213-1575043694:491099..491381Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1510915933:497873..497896TCONS_00052347-exon-scaffold_213-1510915933:497873..497896Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1510915933:494796..494883TCONS_00052347-exon-scaffold_213-1510915933:494796..494883Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1510915933:494287..494439TCONS_00052347-exon-scaffold_213-1510915933:494287..494439Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1510915933:492404..493512TCONS_00052347-exon-scaffold_213-1510915933:492404..493512Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1510915933:491887..492178TCONS_00052347-exon-scaffold_213-1510915933:491887..492178Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1510915933:491099..491381TCONS_00052347-exon-scaffold_213-1510915933:491099..491381Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1491911889:497873..497896TCONS_00052347-exon-scaffold_213-1491911889:497873..497896Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1491911889:494796..494883TCONS_00052347-exon-scaffold_213-1491911889:494796..494883Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1491911889:494287..494439TCONS_00052347-exon-scaffold_213-1491911889:494287..494439Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1491911889:492404..493512TCONS_00052347-exon-scaffold_213-1491911889:492404..493512Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1491911889:491887..492178TCONS_00052347-exon-scaffold_213-1491911889:491887..492178Clytia hemisphaericaexon
TCONS_00052347-exon-scaffold_213-1491911889:491099..491381TCONS_00052347-exon-scaffold_213-1491911889:491099..491381Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:491099..497896 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.101948	0.218713	0	0	2.27426	1.58614	0.288353	0.450421	0.222281	0.319237	0.316406	0.169741	0.124622	0.232363	0	0.0372723	0.16837	0.375984	0.0108372	0	0.0295706	0	0.070129	0.0318813	0	0.0598507	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top