TCONS_00052358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052358
Unique NameTCONS_00052358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2155

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052358 ID=TCONS_00052358|Name=TCONS_00052358|organism=Clytia hemisphaerica|type=transcript|length=2155bp
TAACGAATGAAAAAGGGAAATCAAACCTACATATCCAGCACCATCCACCA
GTAACTGCATCTTTTGAATAACCAAGTTTGCCTTTCCATAGTGCCACCAC
ATTGACCACCAATGGCAACAACCAACAAAGCACGTGCAACCACGGTTATC
AAGCAAAATAAGAAGAAAAGTAAAAGATAAGTGGTAGCAGTAAACGGCAT
GGCTAACATCAGCACCTGTGACAATTTATACTCAAGAAGGTTTCATATGA
ACAACATGCAGCGATTAATCCTTGTTGGTTACAATTTCATTGTCAATGGC
GTGTTAACTTTCACTTTGAACTCGGTGGTCATATACACCCTGTTAAAAAC
AAAGCAGATACGCAAGCCCGCCATGCGGTTGATCTTATATTTGAGTGTGG
CTGATTTGTATTTGTCCCTTGCCTCTCCAATAATTACTGGGCTTATCTAT
ATTAAGTACGCGGAAAAGGAAAACTGCACAGTGGAGCTAATATTGCAGTT
CTTTGACTGTTTTGCATCCGTGCTTTCGCCATTTATATTGTGCTTGGTGG
CTTATGACCGATATGCTTGTATGAAATATGTCAGCAATTATAATGCTAAG
ATGTCGAAAAAACGGGTCAATTATATGACGCTGTTTATGGTTTTTCTGAC
TGGTATAAACTCCACGCTTATTGTTATCGGCACATATACCAAAAAGGTGG
AAGAATTTATGATTGGTTCGATAATTCTTGGACTATCGGTCTTTTTCCCC
TTGATTTGGTTTTTCATCCGAGCTCGAATAATGATGCACAGGCATGTGAA
CATGATGAAAACAATTCGATCAAGCAATGCTAAATTTATTAGAAGTTTCG
ATAGAGCATTATCTAGAATGGTTTTTGCAGTTTTGGTTTGTTGTTTTGTG
TGTTTCAGTTTGTTTGCTATCTCCAATATTTTGAACGGAGCACTTTACGA
TGAAATGGAAGGCGATGAAAACAAAGGATGGTTCGAATTTTCTTATCCTT
TAACGAGTGCAGTTTCGCTAACCCAATCAGCCTTAAATGCAATCATATTT
TTAGCAATGAACAAGAAATCCAGAAGATTTTGGCGATTTAGTTTTAAGAG
GCGAGTGACTNACTGGTCATATACACCCTGTTAAAAACAAAGCAGATACG
CAAGCCCGCCATGCGGTTGATCTTATACTTGAGTGTGGCTGATTTGTATT
TGTCCCTTGCCTCTCCAATAATTACTGGGCTTATCTATATTAAGTACGCG
GAAAAAGAAAACTGCACAGTGGAGCTAATATTGCAGTTCTTTGACTGTTT
TGCATCCGTGCTTTCGCCATTTATATTGTGCTTGGTGGCTTATGACCGAT
ATGCTTGTATGAAATATGTCAGCAATTATAATGCTAAGATGTCGAAAAAA
CGGGTCAATTATATGACGCTGTTTATGGTTTTTCTGACTGGTATAAACTC
CACGCTTATTGTTATCGGCACATATACCAAAAAGGTGGAAGAATTTATGA
TTGGTTCGATAATTCTTGGACTATCGGTCTTTTTCCCCTTGATTTGGTTT
TTCATCCGAGCTCGAATAATGATGCACAGGCATGTGAACATGATGAAAAC
AATTCGATCAAGCAATGCTAAATTTATTAGAAGTTTCGATAGAGCATTAT
CTAGAATGGTTTTTGCAGTTTTGGTTTGTTGTTTTGTGTGTTTCAGTTTG
TTTGCTATCTCCAATATTTTGAACGGAGCACTTTACGATGAAATCGAAGG
CGATGAAAACAAAGGATGGTTCGAATTTTCTTATCCTTTAACGAGTGCAG
TTTCGCTAACCCAATCAGCCTTAAATGCAATCATATTTTTAGCAATGAAC
AAGAAATCCAGAAGATTTTGGCGATTTAGTTTTAAGAGGCGAGTGACTTT
TTATAGAGGAAAATTTTCCTCAGCATCTATCAGTGTGGCGGCGTAAACTG
GCGGTGAATGTTGGTTGACcattttttcatacaaaaagcTGTTAAAACAG
AAAACTGGAAGATTTTTTCTACCACATAAACGTAGATTTCACAGCTCTAT
TGTAACTTATTGTAATATTCTTGAAAACGTTGACAAATATGTAAGATACG
AAATATAGTTCAAAAAATGTGTTACATTCTATTTTGATTTGGTTGCACAT
CTAAA
Run BLAST on NCBI

protein sequence of TCONS_00052358-protein

>TCONS_00052358-protein ID=TCONS_00052358-protein|Name=TCONS_00052358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MANISTCDNLYSRRFHMNNMQRLILVGYNFIVNGVLTFTLNSVVIYTLLK
TKQIRKPAMRLILYLSVADLYLSLASPIITGLIYIKYAEKENCTVELILQ
FFDCFASVLSPFILCLVAYDRYACMKYVSNYNAKMSKKRVNYMTLFMVFL
TGINSTLIVIGTYTKKVEEFMIGSIILGLSVFFPLIWFFIRARIMMHRHV
NMMKTIRSSNAKFIRSFDRALSRMVFAVLVCCFVCFSLFAISNILNGALY
DEMEGDENKGWFEFSYPLTSAVSLTQSALNAIIFLAMNKKSRRFWRFSFK
RRVTXWSYTPC
Run BLAST on NCBI

transcript from alignment at scaffold_213:653076..665302-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052358 ID=TCONS_00052358|Name=TCONS_00052358|organism=Clytia hemisphaerica|type=transcript|length=12227bp|location=Sequence derived from alignment at scaffold_213:653076..665302- (Clytia hemisphaerica)
TAACGAATGAAAAAGGGAAATCAAACCTACATATCCAGCACCATCCACCA
GTAACTGCATCTTTTGAATAACCAAGTTTGCCTTTCCATAGTGCCACCAC
ATTGACCACCAATGGCAACAACCAACAAAGCACGTGCAACCACGGTAAGA
CTTTTATTATTCGATCCACTTTCTCTTTCACTATGACGTAATGTAGTGCT
ATAGATAACACCATTGTCCATAAAAAGGACCAGAGTGAAGACGTAGAAGA
TACAAAGCTCTGGATAGTGCACCAGGAAAGAAACCCATCGTCTTCAATCA
CGGTTTTACTTGAGACAGTGTGGAACTGACCATGGATGACCATTGCACCA
ATCAGGTTTGCCAGAGCTGTCAGTAAGTCAGCTATGGTCATGCAAATGAT
GATTTGACGTGTCAGTGTTTGTACTTCCCGTAGACATGCGAATGTGGTCA
GAATGAGAAATGAACAGACGATGGAGATAGAGGATGAGATTCCAATAATG
ATTTGCTCCGTTTCTGTTGACGAGGTGCCGTTCATTGCCATCTTTAATTT
GAGGATGTGTCAGCTTGTTGTGTCGTCTTGTTTGATTCCTTGGTCGTCTA
GTGTTCTCAGATTTCAGATCTTTCAATATATCTATTCGTTTGGGGGAGTT
GTTTCTGTGATAAATTAGATTTTTCTATCTGTAAATAAAATTCAATGTTA
AAAAACCTAATAAGTCCTATCTATCTCGTGAGGTGAACATTAAAAACACA
GTTGTGTATATTTCATAAGATGAGGATATCATCCTAGCAAATTGTTCTTG
TTTTATTTTCATATCCCCGATGTAATTCGCTCTTATCGTTCGGGCATATT
AGATCCAAGTAATTCTATTAAAAAAAGCATAATTTTGTTCCAATCAATAA
ATCCACTCATTTCTACAATTTCTTTCCAGTAAGTAACTTTCAATTTGTCC
CATATAATACTCATCTCTCCGTCTTTTAGTTAAGTGAGACCCTATATTGT
GTACCTTAACGAGTTTGTTCAAAACAACAACAACTTTTTGCATGTTTATC
CTTTGCATTTGAGACAGTTGACGAACACGAGCTGAGGTGAATTCGAGTAT
AGTATTTGCATAAGTTCTTGTTATATTATATAAACATTGTCATCATGAGG
GTATACACGTATTTTTTATAAGAACATCCAAATTTTTTGAAGCTCTCGGA
TGTTCTTAAGTTTTTGAGTTTTAAGCCTAAAAATTTCTTAACATGTTCTT
AATTTAACCTTTTTGTGAGTGTTTTTGCCAATTTTCCTAAGAAAACGGGT
GTTTTAAAGTCCATGAAGCCTTAAAATGTTCTTAACTTGCTCTTAACATT
TTGGCAAGCGAAGTGCCTTATGTTCTTAAATAGTTTGTTCTTATAAAAAA
CGTGTAGCTGACATCTTTCTTCAAAAATGAAAAATAGATACTAACTGATT
TATTTGCCATGATCCGTTATATGAACCAGTGTCGTTTCTTCTTCGATTAG
TGTTACAATATTTCTATCTGTAGACAGAAATCAGTCCACATCTCCGTCTT
GCCAACAACATCCTTTATGCCAAATTTCATTGTTTACTCGGATTTCAATC
TCAAAAGCCTATTCAACTTGAGAATATAATATTTATTGATATTGAACAGC
GAATTTTAATCTTACTTCAATTATTCTAAGCACAATATAGATAAAGTTTT
TGTCCGTTTTTTTTTGGGACACACTGTACATGCCATGGGCGCGAGATAAA
CGTTGCATTGATGGGCACTCGTGGAAGGGGGGGGGTTAAACGGGTGGTAA
AAGGTAAACGACAGACCGTACGTGCGGCCCTTAAGGGTCCCTTTTCTAAA
CTCTCCAAAGTGCACTGTAAAGGTCGAAATGAGCAAAAATAAGAAAAGGT
GCACTGTAAGGGTGTAGAATTTGGAAAATCTGACCATATTTTGGCTAAAA
ATGGTCAAATTTTTTAAATGCATTGTCAGGGTCGATTTTCGACCAAATTT
ACACAGATTNTCTTTTATTCTTTTTTTGAAAAGTCAACCCTTTGAAACAG
TTAAGTTTAGGCATACACAAAGTGTATTGCTGGTTGATCGACAAAAGGCA
GTTTTTTTCGTTTTTTTTTTCGTTTTTTACTACTTTATAGAGTCAACCAG
CAATAAATTTTGTTTGATATCTTTTGATTGAATGAATATTTTTGAAAAAT
TTTTTGACAGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAAATCACTCCTGTGAAAATGATAATTATACCACATTTCTACAAGAAG
TTGATTTTTTTCTTCTTCATTTTTCATTTTCATTTTCCTTTTTTTTCTCA
ATTTTTTTACTTGATAATATTCCACTCAGGAATATCTTTTGAACGAGCAC
AAAACCGCAACTTGATTCGAATTCTATCAAAAGTTACAGCCATTTTATTC
TCCAGCTGCAAATTATTTCGAGACAGACTTTAGTACTAAGTTGATATGGG
GAGTAAGAAATGCAACGACTTAATTGCTATCTCATCTTTTAGATAGATTA
CATAGACCTTTTCGCCTTTGCGTCCGCCATATTGAATTGTATGCAAAAAT
TATGGTTGCCGAATTGCCGTGGTGAAATTCCCTTAGAAAGTATGCAAAAC
ATATGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTTGCATACATTCCAACTAAATCC
AACCACGGCATTTTCGTTCCTGTATTTTTGCATACAATTCAATATGGCGG
ACGCAAAGGCGAAAAGGTCTAATAGAGAGGAAAAATGATTTTTTTGTTGC
GGAGTATGGGAATCTCCATACTTCGATCCATGATATTCTCATTGAAAGCC
CATTAACTGCCTAAATTGCTAGAGACGCTCCAAGCGTCGCTAAGTCATAA
ATTTCACGCTCTCCTTTCATAATTTACAAAAGGAGCATGCTTTTCACTTG
CGAATTCTGATTTCGTCTATTCAGAAAACTATGATAATATCGTAAAAACT
TTTTTTTTAAACCAGAGGGTAATTCCTTTTAAAATTTGGTTTAACTTATG
AGGAGCGTGCAGCTAAATACAAAAGGAATATAAAAGAAACATGTAGACTT
AATTACTTTAAACCTTGATCTGAACACGACCATATCTATTACTTCAATGA
CCTTTTTGTGAAGTATCTTATAAAAACTCCAGGTCATCTCAAAAATTCAT
GGGGACTTTTTCGCTAACACCTGCCTTTGAAATTAAAGTTTTTTAATTAT
TTTGTCCCCTTCCATATATTGTCTTTAGATAATATTCAGCCTACATTATT
ATACACGTTCTTCTTTTATAAGAACACCCAAAATTTTTGAAGCATTCGGA
TATTCTTAACCTTTTTGGTTTTAAGCCTGAAAATGTTCTTAACATGTTCT
TATTTTCACCATTTTTTTGAAAATGTTAGTCCATTTTCCTAAGTACAATA
CACGCAGTAACAAACAAACATTTTCAAACACGCATTTTCCTAAGTATTAC
ACAGTATTATACACGCTTTTTTTTATAAGAACATACACAATTTTTGAAGC
ATTCAGATATTCTTAACCCTTTTGGTTTTAAGCCTGAAAATGTTCTTAAC
ATGTTCTTATTTTCACCATTTTTTTGAGAATTTTTGTCCATTTTCCTAAG
AAATCGGATGCTCTAGAGTCTGCAAAGCCTTAAAATGTTTTTAACTAACT
CTTAACATTTAAGCTTTCGAAGTCTTATGTTCTTATATAGTTTGTTCTTA
TAAAAAAACCTGTAGGGCTCGAACAATTCTTTCGTCAATTTATCATTTTG
TTAAAATTGTTATGACGAAAGCACTTGCAAAGGATAGCTATGCCAAGCAT
TTCTTTATCCCAATTGGCTTAAATGATTTCAGAGTTTTCAAACCGATTAA
TGGTCTAATTAATGGACATTGAAAATATTGGTTTATCCTGAGATCGCGAA
TAAGACTTTGAATTTAGCATGCTCATACGCTTTTTTATAAGAAAAAAATT
ATAAGAACACGAGGCTGAAGATTAGCAAGAACCTAAGAACAAATTAAGAA
CAATTTCAAACAATCCTCAGATTTCAGAAATTACTGAGACAAACCTGATT
GAAACAGATTTTAAACCCACTTTTAAACCTCTTTTAAGTATTAGGATCGT
GTAATAATGACATATAAAGCTGGAAAATTTCAAAGAAAAATAAGAAAGTA
CAGTCTGAGCAAGAATTTACTTGCTCTTATAAAAAAGCGTGTATCTTGTT
AAAAGGAAGACTAATGAGCTGAGAGGAAAAAGATTTTTCTCAAGTTTCGA
TCGAGAGTCTTAAGGGGCTGAGTGATTATTTAGGGACAGCAGAACAATTA
TGAAAAAGTGAGACCTCAGTATGTATTTTCTCTCATTGGCCCTTTGGTAG
AAAGTTGCGCGTATATTTTCTAAATTAAAAAAAAAATCACAAAAGCTTAT
TGGTTGAAATAATGAATCAGGAATCTTACACCTCTGTCTCATTGATCGCT
GGTGAACGTTTTTAGTATGTAGGGATGAAATGAAGGAGTTATCAATTTAA
TATTGGGATTGAAAATTATTTTCTGGACGTTCAATGTTTTTTGTTTACAT
CCCAAGAGTTCAGTCTCGTTTCAGGAAAATTTATTCTATGTATGGCCGAT
GTTTTAGTTAATCTGGAGACTGACAATTATTTTGAGAATTGTTCTTACGA
AAAAAGTCTGGTTGAAGGACAATCACGTAAGTTGTTGTTATGAGACAGGG
TCATTAAATATGAGATTGATCTCATTTCACTGGATTCAATCACAAATCTA
TGGATATATAATAGGCCAATGAAGTGAAGGTTTTTTGATGGGGGAATGAA
AGAATTTTTGGAGCAAGGATGATGTTTATAGTAGGGAAATTACTTAGTAA
AAAATGTCTTTAGATGAAATTTAATAGATGTGAAGTTTTGGTGAGGACGG
TACAACAACGGTTTAAGCAACACAATTGTTGAACTGAAACTTTTGGTCTT
GTTGGAAATTGATTTTAATACCTATATTTGGAGCTCTTTGAATGATGATT
GAGCACTGATTTTGCTTGGGAAGGTTTGCTTAATGTGCAGTGAAGCTCAA
AATATAATTTGGGGGATTTTAACCTTTTTCATAATTTAAAGTTCGAGTGA
GAATTGCGATTTCAGTATTTCCATCTTATTTCATTGGATATTTTGTTTCA
ACCGCATCGTCGTCTCTCTAGCCCTTTCAGTCCCAGGGGACTGCACTGCA
GTCCCTATATGCCCATCGTTTTTTCCAAGAGGACCGCATTGCTGTCCCTG
ACTTCTTTTTCAAATTGTGATGTCTTGGCGGGAAATAAAGAGAAGTCTTT
AAAGTAGCTTTCAAAGAAGATAAGATAGCGCGTCGTGTGCAAAAGACCGC
GTACGAGCTTGATCGAGTAAAAAGTTCTGTTTACAAAATTTTTACAAAAA
TTTTTGGGGGCAAAATCTGTAAGGCCGAAAATTGGATTTTTTACAACTTC
TATCAATCATTAAGATTTTTCTGTGAGAGCTAATCAAACAATTCTTTTTT
CAGTTAGTAGAAGATACTGTTGTGCTAAACATTTATCAGAAGAATGAATG
GCTTTAAACCATTTTTTCATAAAAAAATTATGATTGAATGGCAAAAAAGT
GCTGTTTTCAAATTTTTTTTGCCTTTCTCTGATCACGTGACACGCTGATG
ACGTCATTTTGCAAATTTTTTTCTATCAAAATGATCCTCACAATATACAT
ACACGTTTTTTTTTTTATAAGAACAAAGTATATAAGAACATAAGGCTTCG
ATGGCCGAAATATTAAGAACATGTTAAGAACATTTTAAGGCTTTGTGGAC
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAA
ACGTGTAAGTGAAAAAGGGTGAAAACTTGAGAGGCCTAGGTTTAATGAAT
CCAGAGATATTGAAGCATAAGTAAACGCATTCAAAAACTCATTTTACGGC
TCTGGGAAGGTAGCTGTGAAAACTCCGGGACTGAAAGGGCTAGATTAATC
CACAAGAATTTCGGCCAAGACGACTTTTAGGGCGAAGTTTATACTTTCAA
CGTTAACTCTGACTACAATGATACATTACTCTTTGTGCATATACCCAAGC
AATTTTTCTTTTCAATATTTTTGGTTTGGTAAATTTGGATCTAATTATAA
AGGCGGACACAGCAATTATGAAGGTTTTAATTTTAGAAAGCAGTGGTCAG
AAAGAAATTCGATTAATTTCATACCAGAAATAATTGCTTATTTAACTGCT
TTATGGAACCAGTTGATTACATATTGACATAAATCAATGAGTTGACTATA
AAGCAAATGAGACCACATATTTACACTTGACAGGAATTCTTCCCAATGGA
AGAAAAACCGTCTTGATGTAAGTAGGAAAAATGTAAGAAAGACAAGACGA
CTTAAAGTCGAAAATTTCGCTTAATACTTGAACATCAACGACGAAGACGC
GTGAAACGTGACTCCTGCAGCATTATGCATTTTGAATGAAGCGTTAAACA
AAATATACACAATGTATTGTACACACAGGTCACATAGATACCCTGTTTTT
TTTAATGAAAAATCTTAATCCATTAAAAAAAAGATTCCTTAAAAAATGCG
ACTGAAGAATTCGATTCTATAAAGCGTAAACAAGATCTTTCAATTCAGAA
TAATTCAGAGAATTGCAATACACTTGAGAAAAATAATTTTTTTTTTATAA
TGAAGAAGAAAAAATAAACTTTTCATTCTTTGATGCCAGAAACCTCATTT
TGTGCTTCGAGGGAACTTGTGATAAAGACTTCTTTCACTTGCGCAAAGTT
TATATCAACTTCTTTCTAGGGGGGGGCGTACCAGTTTGTCGGTGTGTCGG
TATTGACCTTTTTTTGCGTCGGTATTTCGGTGATTAACAAAAAATATGTC
GGTATTTCGGTGTTTGAGATGCTTTTCGGTGACGGAAAATGTTAAATTTT
CAATCGGTGATACGGTAATTTTTCTCGAAACGTCAAAGAAACGGTGCTAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCCCCCCCCCCCTGGACATTGTGACTTTTGATCTACGAAAGACCA
GAAAACATGATATAAAAATTTATACAGCAGCAGCAAGTTTCAAAAGCATT
TGCAATGTGCAATGCAATCAAGCAGCCATTTAAAAAGTTCTCACGATGAA
TGTTTACAAAGGCTTGGTTACACTTCTTGCACTAGCGTATTTAATTTATT
AAGAAAAGCCCTGTTTTTTATCACTTTTTATCTTTGTGAGTGAGTCCACC
TTTAGAATATTGTCCGTAGTACGCCCACATCCAAACGCCCACGCCATAAT
TTGCGCCCCAAAAAATGTCTCGCCACATACATACATACACGGAAGGCTAT
CGTAATACTTTCGCTAAGCGAAATTAAAAAATGCGCCAAAGTTATATTCA
CATTGGAAAATCGTAAAGTATCCTAAAAAAGTAGTCATTTTAAGTTGGAA
GCAAGGGATTTTGATAATCGATAAGATATTGGTATTAGGTCTATAGTGGC
CCTTTTTCTTTGCTATAAATGTATCTCGAACCAAGATGAAAATCGATATT
AAGGTGTTTAATTTCCCTGACCAAAAATTGTCTGGAGACAGGATATGTAC
TTCCATGATCAAAAGGATCTATTCTAATTTAAAGAGAGTATATTATTGTG
AGGGTTTGTTTTTCTTTCTAAATATTCTTTTCTTTGAGCTTGAAGCTAAC
GTCAGTGCTGAGTCATTATTGATAGATCATAAAGGATGGGAATTTTCCCA
CTAACATTGGTAATTCTTTTTGAAAAGCGCAAGCGATAATACATGCGTGA
TCCAATATCTGTTTACTTCAATATTCTTTAAAAATTAAGTGGTAAAAGAC
CAACAAAATTCACATCAAAAATTCTTTTTCCTTCCCAGTTTCTTTCCCAA
TCAATATTCAGAAAGATGGAAAATGTGCAATCTGGGTACAATGACCAAAA
GGGAAAAAGCTTCTCTTTCTTTCCGATGACCTTTTTCCACAGGCAAGTCC
CCCCCCCCCAAATCAATGTTGTTTTTGGCAAAACCCCCCACCACANGAAA
GATGGAAAATGTGCAATCTGGGTACAATGACCAAAAGGGCAAAAGCTTCT
CTTTCTTTCCGATGACCTTTTTCCACAGGCAAGTCCCATGCAAGTTGCAT
GTTACAAGACTCACCATCAACATTGATATTGGGGGAGGGGGTGGACAAAC
AGTTCTGTCCAGGATTGTAGAGACTAAAAAGGAATTTCTTTTTGAAGAAA
GAAGAAGTAGAAGGAGTTTTCAAGCGGAGTCCTTGGTGTCATTTACATGT
GAGGCTGGAGGGAACTTTAACAAATTTGACAAAATGTATGATGTTTGATC
TCCTAGGGCCTTCTATACCCTCTACGGCAATGAATTTTGAAATTAGCCGT
AGATATTGGGTCTGTGTACAGACAAGATCTCCTAGGTCATGTTTGATTTA
TATACCATGTTGCTCATACACGCTTTTTTATAAGAATGGTGTTTTTTCAT
TTCATGATGGATATTCTTAACTTTTTGGGAAAATCATCCAAAAATATTCT
TACAGCATTCTTAGGTTAGGATCCTAATTCAGAATAGATTTTACATACGT
CTGTAGTAAGCCTTACTTCGGAGAATAATTGGCGATTGATAATTGAAAAT
ACTCTACAAATGGCATTCTTAGCTTCAGATACCGAATTCCATGATGGTGA
TATTCTTAGCATGTTCTTAATTTGTTGGCCAATTTTACATGAATATTCTC
ATAAGAGTGTATTCTTATAAAAAAAAGCGTGTTTTGTTTATATCGTCGTT
AACTTTATTTTTTAAGGTTATCAAGCAAAATAAGAAGAAAAGTAAAAGAT
AAGTGGTAGCAGTAAACGGCATGGCTAACATCAGCACCTGTGACAATTTA
TACTCAAGAAGGTTTCATATGAACAACATGCAGCGATTAATCCTTGTTGG
TTACAATTTCATTGTCAATGGCGTGTTAACTTTCACTTTGAACTCGGTGG
TCATATACACCCTGTTAAAAACAAAGCAGATACGCAAGCCCGCCATGCGG
TTGATCTTATATTTGAGTGTGGCTGATTTGTATTTGTCCCTTGCCTCTCC
AATAATTACTGGGCTTATCTATATTAAGTACGCGGAAAAGGAAAACTGCA
CAGTGGAGCTAATATTGCAGTTCTTTGACTGTTTTGCATCCGTGCTTTCG
CCATTTATATTGTGCTTGGTGGCTTATGACCGATATGCTTGTATGAAATA
TGTCAGCAATTATAATGCTAAGATGTCGAAAAAACGGGTCAATTATATGA
CGCTGTTTATGGTTTTTCTGACTGGTATAAACTCCACGCTTATTGTTATC
GGCACATATACCAAAAAGGTGGAAGAATTTATGATTGGTTCGATAATTCT
TGGACTATCGGTCTTTTTCCCCTTGATTTGGTTTTTCATCCGAGCTCGAA
TAATGATGCACAGGCATGTGAACATGATGAAAACAATTCGATCAAGCAAT
GCTAAATTTATTAGAAGTTTCGATAGAGCATTATCTAGAATGGTTTTTGC
AGTTTTGGTTTGTTGTTTTGTGTGTTTCAGTTTGTTTGCTATCTCCAATA
TTTTGAACGGAGCACTTTACGATGAAATGGAAGGCGATGAAAACAAAGGA
TGGTTCGAATTTTCTTATCCTTTAACGAGTGCAGTTTCGCTAACCCAATC
AGCCTTAAATGCAATCATATTTTTAGCAATGAACAAGAAATCCAGAAGAT
TTTGGCGATTTAGTTTTAAGAGGCGAGTGACTNACTGGTCATATACACCC
TGTTAAAAACAAAGCAGATACGCAAGCCCGCCATGCGGTTGATCTTATAC
TTGAGTGTGGCTGATTTGTATTTGTCCCTTGCCTCTCCAATAATTACTGG
GCTTATCTATATTAAGTACGCGGAAAAAGAAAACTGCACAGTGGAGCTAA
TATTGCAGTTCTTTGACTGTTTTGCATCCGTGCTTTCGCCATTTATATTG
TGCTTGGTGGCTTATGACCGATATGCTTGTATGAAATATGTCAGCAATTA
TAATGCTAAGATGTCGAAAAAACGGGTCAATTATATGACGCTGTTTATGG
TTTTTCTGACTGGTATAAACTCCACGCTTATTGTTATCGGCACATATACC
AAAAAGGTGGAAGAATTTATGATTGGTTCGATAATTCTTGGACTATCGGT
CTTTTTCCCCTTGATTTGGTTTTTCATCCGAGCTCGAATAATGATGCACA
GGCATGTGAACATGATGAAAACAATTCGATCAAGCAATGCTAAATTTATT
AGAAGTTTCGATAGAGCATTATCTAGAATGGTTTTTGCAGTTTTGGTTTG
TTGTTTTGTGTGTTTCAGTTTGTTTGCTATCTCCAATATTTTGAACGGAG
CACTTTACGATGAAATCGAAGGCGATGAAAACAAAGGATGGTTCGAATTT
TCTTATCCTTTAACGAGTGCAGTTTCGCTAACCCAATCAGCCTTAAATGC
AATCATATTTTTAGCAATGAACAAGAAATCCAGAAGATTTTGGCGATTTA
GTTTTAAGAGGCGAGTGACTTTTTATAGAGGAAAATTTTCCTCAGCATCT
ATCAGTGTGGCGGCGTAAACTGGCGGTGAATGTTGGTTGACCATTTTTTC
ATACAAAAAGCTGTTAAAACAGAAAACTGGAAGATTTTTTCTACCACATA
AACGTAGATTTCACAGCTCTATTGTAACTTATTGTAATATTCTTGAAAAC
GTTGACAAATATGTAAGATACGAAATATAGTTCAAAAAATGTGTTACATT
CTATTTTGATTTGGTTGCACATCTAAA

Coding sequence (CDS) from alignment at scaffold_213:653076..665302-

>TCONS_00052358 ID=TCONS_00052358|Name=TCONS_00052358|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_213:653076..665302- (Clytia hemisphaerica)
ATGGCTAACATCAGCACCTGTGACAATTTATACTCAAGAAGGTTTCATAT
GAACAACATGCAGCGATTAATCCTTGTTGGTTACAATTTCATTGTCAATG
GCGTGTTAACTTTCACTTTGAACTCGGTGGTCATATACACCCTGTTAAAA
ACAAAGCAGATACGCAAGCCCGCCATGCGGTTGATCTTATATTTGAGTGT
GGCTGATTTGTATTTGTCCCTTGCCTCTCCAATAATTACTGGGCTTATCT
ATATTAAGTACGCGGAAAAGGAAAACTGCACAGTGGAGCTAATATTGCAG
TTCTTTGACTGTTTTGCATCCGTGCTTTCGCCATTTATATTGTGCTTGGT
GGCTTATGACCGATATGCTTGTATGAAATATGTCAGCAATTATAATGCTA
AGATGTCGAAAAAACGGGTCAATTATATGACGCTGTTTATGGTTTTTCTG
ACTGGTATAAACTCCACGCTTATTGTTATCGGCACATATACCAAAAAGGT
GGAAGAATTTATGATTGGTTCGATAATTCTTGGACTATCGGTCTTTTTCC
CCTTGATTTGGTTTTTCATCCGAGCTCGAATAATGATGCACAGGCATGTG
AACATGATGAAAACAATTCGATCAAGCAATGCTAAATTTATTAGAAGTTT
CGATAGAGCATTATCTAGAATGGTTTTTGCAGTTTTGGTTTGTTGTTTTG
TGTGTTTCAGTTTGTTTGCTATCTCCAATATTTTGAACGGAGCACTTTAC
GATGAAATGGAAGGCGATGAAAACAAAGGATGGTTCGAATTTTCTTATCC
TTTAACGAGTGCAGTTTCGCTAACCCAATCAGCCTTAAATGCAATCATAT
TTTTAGCAATGAACAAGAAATCCAGAAGATTTTGGCGATTTAGTTTTAAG
AGGCGAGTGACTNACTGGTCATATACACCCTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033101XLOC_033101Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052358-proteinTCONS_00052358-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052358-exon-scaffold_213-1575043694:665159..665302TCONS_00052358-exon-scaffold_213-1575043694:665159..665302Clytia hemisphaericaexon
TCONS_00052358-exon-scaffold_213-1575043694:653076..655086TCONS_00052358-exon-scaffold_213-1575043694:653076..655086Clytia hemisphaericaexon
TCONS_00052358-exon-scaffold_213-1510915933:665159..665302TCONS_00052358-exon-scaffold_213-1510915933:665159..665302Clytia hemisphaericaexon
TCONS_00052358-exon-scaffold_213-1510915933:653076..655086TCONS_00052358-exon-scaffold_213-1510915933:653076..655086Clytia hemisphaericaexon
TCONS_00052358-exon-scaffold_213-1491911889:665159..665302TCONS_00052358-exon-scaffold_213-1491911889:665159..665302Clytia hemisphaericaexon
TCONS_00052358-exon-scaffold_213-1491911889:653076..655086TCONS_00052358-exon-scaffold_213-1491911889:653076..655086Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:653076..665302 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.8204	0.976238	0.454128	0.201952	0.885084	0.951969	2.7658	2.96234	1.89889	4.94769	2.35014	1.68195	1.38458	1.62427	0.470823	0.524937	0.609342	0.698263	0.566674	0.965852	0.511179	0.578992	1.32968	1.2604	0.595698	0.314447	0.224986	0.320149	0.647524	0.882271
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top